pycom07g01520

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000520
Physical Location & Seq
Forward (+)
1160754 .. 1170983
10230 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g01520.2

Sequence Viewer

Length: 495 bp
ATGGCTCAACTCCAACTTGGCGAGGAGAATACTACTAGTCCAAATTCACAAACCCTTGTAAAGTTTGCTAGACCTTTCAAATTCACAGTCCCTTGTGAAGTTTGTGGTGTGGTTGGCCACTTTAATGATAGATGCCCCTCCATCGAAGTAGGCCTCCCAGACAACGTAACTGAGGTTCCCAAGGGCTATGAAATAGTAACCTTCCGTGGTGGGAAGCGTGCTGTTGGGATCATGTTCTGTGGTTATTGTAAAATGATCCGTGACCGCAAGAACGAGGACTGCCTGGATAAGAGCGAAATGATCGCACTAATGAACTCCGTTCTGAAGCCCACTCCCCCTTTTATAGGTCCTTACATTTCCCCTCAAAAGCAAAATCCGCTGCAGACAATCACCAGCCGTTCAGAAGAATTTCATGTCCAATTTTTTTCCTTCTGTTTTCAGATCTCTTCTATTTCAGGTTTCCTCATGAAAAATACACCTTCCGGAAATTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.3

Weight (kDa)

8.16

Isoelectric Point (pI)

45.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 482
AciI CCGC 2 cut(s) 265, 377
AclWI GGATC 2 cut(s) 236, 250
AcoI YGGCCR 1 cut(s) 115
AcsI RAATTY 4 cut(s) 43, 80, 407, 487
AcuI CTGAAG 1 cut(s) 344
AfiI CCNNNNNNNGG 1 cut(s) 344
AgsI TTSAA 1 cut(s) 79
AhlI ACTAGT 1 cut(s) 35
AjnI CCWGG 1 cut(s) 282
AlwI GGATC 2 cut(s) 236, 250
Aor13HI TCCGGA 1 cut(s) 482
AoxI GGCC 2 cut(s) 115, 151
ApeKI GCWGC 1 cut(s) 379
ApoI RAATTY 4 cut(s) 43, 80, 407, 487
ArsI GACNNNNNNTTYG 2 cut(s) 72, 104
Asp700I GAANNNNTTC 1 cut(s) 408
AspS9I GGNCC 1 cut(s) 347
AsuHPI GGTGA 1 cut(s) 382
AvaII GGWCC 1 cut(s) 347
BalI TGGCCA 1 cut(s) 117
BbvI GCAGC 1 cut(s) 366
BccI CCATC 1 cut(s) 149
BceAI ACGGC 1 cut(s) 381
BciT130I CCWGG 1 cut(s) 284
BcuI ACTAGT 1 cut(s) 35
BfaI CTAG 2 cut(s) 36, 69
BfmI CTRYAG 1 cut(s) 380
BglII AGATCT 1 cut(s) 441
BisI GCNGC 1 cut(s) 380
BlsI GCNGC 1 cut(s) 381
Bme1390I CCNGG 1 cut(s) 284
Bme18I GGWCC 1 cut(s) 347
BmgT120I GGNCC 1 cut(s) 347
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 1 cut(s) 284
BmsI GCATC 1 cut(s) 122
BsaJI CCNNGG 2 cut(s) 180, 205
BsaWI WCCGGW 1 cut(s) 482
Bsc4I CCNNNNNNNGG 1 cut(s) 344
BseAI TCCGGA 1 cut(s) 482
BseBI CCWGG 1 cut(s) 284
BseDI CCNNGG 2 cut(s) 180, 205
BseLI CCNNNNNNNGG 1 cut(s) 344
BseMII CTCAG 1 cut(s) 162
BseRI GAGGAG 1 cut(s) 38
BseXI GCAGC 1 cut(s) 366
BshFI GGCC 2 cut(s) 117, 153
BsiSI CCGG 1 cut(s) 483
BslFI GGGAC 1 cut(s) 74
BslI CCNNNNNNNGG 1 cut(s) 344
BsmFI GGGAC 1 cut(s) 74
BsnI GGCC 2 cut(s) 117, 153
Bsp13I TCCGGA 1 cut(s) 482
Bsp143I GATC 4 cut(s) 228, 255, 300, 441
BspACI CCGC 2 cut(s) 265, 377
BspANI GGCC 2 cut(s) 117, 153
BspCNI CTCAG 1 cut(s) 163
BspEI TCCGGA 1 cut(s) 482
BspHI TCATGA 1 cut(s) 465
BspLI GGNNCC 1 cut(s) 177
BspMAI CTGCAG 1 cut(s) 384
BspPI GGATC 2 cut(s) 236, 250
BssECI CCNNGG 2 cut(s) 180, 205
BssMI GATC 4 cut(s) 228, 255, 300, 441
BssT1I CCWWGG 1 cut(s) 180
Bst2UI CCWGG 1 cut(s) 284
Bst4CI ACNGT 1 cut(s) 88
Bst6I CTCTTC 1 cut(s) 451
BstC8I GCNNGC 1 cut(s) 219
BstDEI CTNAG 2 cut(s) 171, 492
BstDSI CCRYGG 1 cut(s) 205
BstENI CCTNNNNNAGG 1 cut(s) 342
BstKTI GATC 4 cut(s) 231, 258, 303, 444
BstMBI GATC 4 cut(s) 228, 255, 300, 441
BstMWI GCNNNNNNNGC 1 cut(s) 376
BstNI CCWGG 1 cut(s) 284
BstSCI CCNGG 1 cut(s) 282
BstSFI CTRYAG 1 cut(s) 380
BstV1I GCAGC 1 cut(s) 366
BstX2I RGATCY 1 cut(s) 441
BstYI RGATCY 1 cut(s) 441
BsuRI GGCC 2 cut(s) 117, 153
BtgI CCRYGG 1 cut(s) 205
Cac8I GCNNGC 1 cut(s) 219
CciI TCATGA 1 cut(s) 465
Cfr13I GGNCC 1 cut(s) 347
CviAII CATG 3 cut(s) 232, 413, 466
CviJI RGCY 6 cut(s) 5, 117, 153, 186, 328, 396
CviKI_1 RGCY 6 cut(s) 5, 117, 153, 186, 328, 396
DdeI CTNAG 2 cut(s) 171, 492
DpnI GATC 4 cut(s) 230, 257, 302, 443
DpnII GATC 4 cut(s) 228, 255, 300, 441
EaeI YGGCCR 1 cut(s) 115
Eam1104I CTCTTC 1 cut(s) 451
EarI CTCTTC 1 cut(s) 451
Eco130I CCWWGG 1 cut(s) 180
Eco147I AGGCCT 1 cut(s) 153
Eco47I GGWCC 1 cut(s) 347
Eco57I CTGAAG 1 cut(s) 344
EcoNI CCTNNNNNAGG 1 cut(s) 342
EcoO109I RGGNCCY 1 cut(s) 347
EcoRII CCWGG 1 cut(s) 282
EcoT14I CCWWGG 1 cut(s) 180
ErhI CCWWGG 1 cut(s) 180
FaeI CATG 3 cut(s) 235, 416, 469
FaiI YATR 5 cut(s) 189, 233, 344, 414, 467
FaqI GGGAC 1 cut(s) 74
FatI CATG 3 cut(s) 231, 412, 465
Fnu4HI GCNGC 1 cut(s) 380
Fsp4HI GCNGC 1 cut(s) 380
FspBI CTAG 2 cut(s) 36, 69
GluI GCNGC 1 cut(s) 380
HaeIII GGCC 2 cut(s) 117, 153
HapII CCGG 1 cut(s) 483
Hin1II CATG 3 cut(s) 235, 416, 469
HpaII CCGG 1 cut(s) 483
HphI GGTGA 1 cut(s) 382
Hpy188I TCNGA 3 cut(s) 324, 403, 441
Hpy188III TCNNGA 2 cut(s) 466, 483
HpyAV CCTTC 3 cut(s) 211, 439, 489
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 1 cut(s) 382
HpyF10VI GCNNNNNNNGC 1 cut(s) 376
HpyF3I CTNAG 2 cut(s) 171, 492
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 3 cut(s) 235, 416, 469
Kpn2I TCCGGA 1 cut(s) 482
Kzo9I GATC 4 cut(s) 228, 255, 300, 441
LpnPI CCDG 5 cut(s) 171, 269, 296, 406, 441
Lsp1109I GCAGC 1 cut(s) 366
LweI GCATC 1 cut(s) 122
MaeI CTAG 2 cut(s) 36, 69
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 3 cut(s) 166, 196, 260
MalI GATC 4 cut(s) 230, 257, 302, 443
MboI GATC 4 cut(s) 228, 255, 300, 441
MboII GAAGA 2 cut(s) 416, 438
MflI RGATCY 1 cut(s) 441
MlsI TGGCCA 1 cut(s) 117
MluCI AATT 5 cut(s) 43, 80, 407, 419, 487
MluNI TGGCCA 1 cut(s) 117
MmeI TCCRAC 1 cut(s) 37
MnlI CCTC 7 cut(s) 16, 148, 164, 166, 268, 372, 473
Mox20I TGGCCA 1 cut(s) 117
MroI TCCGGA 1 cut(s) 482
MroXI GAANNNNTTC 1 cut(s) 408
MscI TGGCCA 1 cut(s) 117
MseI TTAA 1 cut(s) 123
MslI CAYNNNNRTG 1 cut(s) 123
Msp20I TGGCCA 1 cut(s) 117
MspA1I CMGCKG 1 cut(s) 379
MspI CCGG 1 cut(s) 483
MspR9I CCNGG 1 cut(s) 284
MvaI CCWGG 1 cut(s) 284
MwoI GCNNNNNNNGC 1 cut(s) 376
NdeII GATC 4 cut(s) 228, 255, 300, 441
NlaIII CATG 3 cut(s) 235, 416, 469
NlaIV GGNNCC 1 cut(s) 177
NmuCI GTSAC 1 cut(s) 260
PagI TCATGA 1 cut(s) 465
PceI AGGCCT 1 cut(s) 153
PdmI GAANNNNTTC 1 cut(s) 408
PkrI GCNGC 1 cut(s) 381
PpuMI RGGWCCY 1 cut(s) 347
Psp5II RGGWCCY 1 cut(s) 347
Psp6I CCWGG 1 cut(s) 282
PspGI CCWGG 1 cut(s) 282
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 1 cut(s) 347
PspPPI RGGWCCY 1 cut(s) 347
PsrI GAACNNNNNNTAC 2 cut(s) 159, 191
PstI CTGCAG 1 cut(s) 384
PsuI RGATCY 1 cut(s) 441
RseI CAYNNNNRTG 1 cut(s) 123
SaqAI TTAA 1 cut(s) 123
SatI GCNGC 1 cut(s) 380
Sau3AI GATC 4 cut(s) 228, 255, 300, 441
Sau96I GGNCC 1 cut(s) 347
ScrFI CCNGG 1 cut(s) 284
SetI ASST 7 cut(s) 76, 168, 177, 203, 349, 460, 481
SfaNI GCATC 1 cut(s) 122
SfcI CTRYAG 1 cut(s) 380
SinI GGWCC 1 cut(s) 347
SmiMI CAYNNNNRTG 1 cut(s) 123
SpeI ACTAGT 1 cut(s) 35
Sse9I AATT 5 cut(s) 43, 80, 407, 419, 487
SseBI AGGCCT 1 cut(s) 153
SsiI CCGC 2 cut(s) 265, 377
SspMI CTAG 2 cut(s) 36, 69
StuI AGGCCT 1 cut(s) 153
StyD4I CCNGG 1 cut(s) 282
StyI CCWWGG 1 cut(s) 180
TaaI ACNGT 1 cut(s) 88
TaiI ACGT 1 cut(s) 168
TaqI TCGA 1 cut(s) 144
TasI AATT 5 cut(s) 43, 80, 407, 419, 487
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TseFI GTSAC 1 cut(s) 260
TseI GCWGC 1 cut(s) 379
Tsp45I GTSAC 1 cut(s) 260
TspDTI ATGAA 4 cut(s) 204, 326, 401, 482
TspGWI ACGGA 3 cut(s) 194, 248, 307
VpaK11BI GGWCC 1 cut(s) 347
XagI CCTNNNNNAGG 1 cut(s) 342
XapI RAATTY 4 cut(s) 43, 80, 407, 487
XmnI GAANNNNTTC 1 cut(s) 408
XspI CTAG 2 cut(s) 36, 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.