Rh3CG333300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000520
Physical Location & Seq
Reverse (-)
37130437 .. 37130846
410 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG333300.1

Sequence Viewer

Length: 288 bp
ATGGATGCTTCTGGAATCACAGTGAGACCAGCAGTGGGCAAGGAGAAGGAGAAGTACTCTGAAGAAGATCTAAAGGCTGCCGCCAGAGTCATCAAAAAAGAAGGATGGCAGATTTGTGCGGCTCACTGTTGGATGTGCGGTAAGTGGGGAGGACGTGCGGTGGAGGCGTCTACCTTTGATGAGAGCTATCGTAACCACCTAGAAGAAGATTACATAGCAGAACCAATTGTGTATGCAGAGTACATAGACCTAGACAAAACTAAAAGTCAGACTCTGAAGATCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.77

Weight (kDa)

5.38

Isoelectric Point (pI)

33.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 170
AciI CCGC 4 cut(s) 81, 119, 138, 158
AcuI CTGAAG 1 cut(s) 81
AcyI GRCGYC 1 cut(s) 167
AfaI GTAC 2 cut(s) 56, 242
AfiI CCNNNNNNNGG 1 cut(s) 35
AjiI CACGTC 1 cut(s) 155
AluBI AGCT 1 cut(s) 186
AluI AGCT 1 cut(s) 186
Alw26I GTCTC 1 cut(s) 19
AlwNI CAGNNNCTG 1 cut(s) 274
ApeKI GCWGC 1 cut(s) 77
BarI GAAGNNNNNNTAC 2 cut(s) 38, 70
BbvI GCAGC 1 cut(s) 64
BccI CCATC 1 cut(s) 99
BcoDI GTCTC 1 cut(s) 19
BfaI CTAG 2 cut(s) 200, 251
BglII AGATCT 1 cut(s) 67
BisI GCNGC 3 cut(s) 78, 81, 120
BlsI GCNGC 3 cut(s) 79, 82, 121
BmcAI AGTACT 1 cut(s) 56
BmgBI CACGTC 1 cut(s) 155
BplI GAGNNNNNCTC 2 cut(s) 41, 73
BsaHI GRCGYC 1 cut(s) 167
BsaI GGTCTC 1 cut(s) 19
Bsc4I CCNNNNNNNGG 1 cut(s) 35
BseGI GGATG 3 cut(s) 10, 110, 138
BseLI CCNNNNNNNGG 1 cut(s) 35
BseXI GCAGC 1 cut(s) 64
BslI CCNNNNNNNGG 1 cut(s) 35
BsmAI GTCTC 1 cut(s) 19
Bso31I GGTCTC 1 cut(s) 19
Bsp143I GATC 2 cut(s) 67, 279
BspACI CCGC 4 cut(s) 81, 119, 138, 158
BspTNI GGTCTC 1 cut(s) 19
BssMI GATC 2 cut(s) 67, 279
BssNI GRCGYC 1 cut(s) 167
Bst4CI ACNGT 2 cut(s) 22, 128
BstACI GRCGYC 1 cut(s) 167
BstF5I GGATG 3 cut(s) 10, 110, 138
BstKTI GATC 2 cut(s) 70, 282
BstMAI GTCTC 1 cut(s) 19
BstMBI GATC 2 cut(s) 67, 279
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstV1I GCAGC 1 cut(s) 64
BstX2I RGATCY 1 cut(s) 67
BstYI RGATCY 1 cut(s) 67
BtrI CACGTC 1 cut(s) 155
BtsCI GGATG 3 cut(s) 10, 110, 138
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 3 cut(s) 27, 39, 124
CaiI CAGNNNCTG 1 cut(s) 274
CseI GACGC 1 cut(s) 156
Csp6I GTAC 2 cut(s) 55, 241
CviJI RGCY 3 cut(s) 77, 122, 186
CviKI_1 RGCY 3 cut(s) 77, 122, 186
CviQI GTAC 2 cut(s) 55, 241
DpnI GATC 2 cut(s) 69, 281
DpnII GATC 2 cut(s) 67, 279
Eco31I GGTCTC 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 81
FaiI YATR 4 cut(s) 215, 234, 245, 286
FblI GTMKAC 1 cut(s) 170
Fnu4HI GCNGC 3 cut(s) 78, 81, 120
FokI GGATG 3 cut(s) 17, 117, 145
Fsp4HI GCNGC 3 cut(s) 78, 81, 120
FspBI CTAG 2 cut(s) 200, 251
GluI GCNGC 3 cut(s) 78, 81, 120
HgaI GACGC 1 cut(s) 156
Hin1I GRCGYC 1 cut(s) 167
HinfI GANTC 3 cut(s) 15, 87, 271
Hpy166II GTNNAC 1 cut(s) 171
Hpy188I TCNGA 3 cut(s) 61, 270, 276
Hpy188III TCNNGA 1 cut(s) 12
Hpy8I GTNNAC 1 cut(s) 171
HpyAV CCTTC 2 cut(s) 40, 95
HpyCH4III ACNGT 2 cut(s) 22, 128
HpyCH4IV ACGT 1 cut(s) 154
HpyCH4V TGCA 1 cut(s) 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpySE526I ACGT 1 cut(s) 154
Hsp92I GRCGYC 1 cut(s) 167
Kzo9I GATC 2 cut(s) 67, 279
LpnPI CCDG 2 cut(s) 42, 97
Lsp1109I GCAGC 1 cut(s) 64
MaeI CTAG 2 cut(s) 200, 251
MaeII ACGT 1 cut(s) 154
MaeIII GTNAC 1 cut(s) 191
MalI GATC 2 cut(s) 69, 281
MboI GATC 2 cut(s) 67, 279
MboII GAAGA 4 cut(s) 74, 77, 215, 218
MfeI CAATTG 1 cut(s) 225
MflI RGATCY 1 cut(s) 67
MluCI AATT 1 cut(s) 225
MlyI GAGTC 2 cut(s) 96, 265
MmeI TCCRAC 1 cut(s) 110
MnlI CCTC 2 cut(s) 143, 157
MunI CAATTG 1 cut(s) 225
MwoI GCNNNNNNNGC 1 cut(s) 164
NdeII GATC 2 cut(s) 67, 279
PfeI GAWTC 1 cut(s) 15
PkrI GCNGC 3 cut(s) 79, 82, 121
PleI GAGTC 2 cut(s) 95, 265
PpsI GAGTC 2 cut(s) 95, 265
PstNI CAGNNNCTG 1 cut(s) 274
PsuI RGATCY 1 cut(s) 67
RsaI GTAC 2 cut(s) 56, 242
RsaNI GTAC 2 cut(s) 55, 241
SatI GCNGC 3 cut(s) 78, 81, 120
Sau3AI GATC 2 cut(s) 67, 279
ScaI AGTACT 1 cut(s) 56
SchI GAGTC 2 cut(s) 96, 265
SetI ASST 5 cut(s) 157, 176, 188, 201, 252
SgeI CNNG 7 cut(s) 24, 41, 52, 96, 167, 212, 263
Sse9I AATT 1 cut(s) 225
SsiI CCGC 4 cut(s) 81, 119, 138, 158
SspMI CTAG 2 cut(s) 200, 251
TaaI ACNGT 2 cut(s) 22, 128
TaiI ACGT 1 cut(s) 157
TasI AATT 1 cut(s) 225
TatI WGTACW 2 cut(s) 54, 240
TauI GCSGC 2 cut(s) 83, 122
TfiI GAWTC 1 cut(s) 15
TscAI CASTG 3 cut(s) 27, 39, 131
TseI GCWGC 1 cut(s) 77
TspRI CASTG 3 cut(s) 27, 39, 131
XmiI GTMKAC 1 cut(s) 170
XspI CTAG 2 cut(s) 200, 251
ZrmI AGTACT 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.