Rroxscaffold_3G00241430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000520
Physical Location & Seq
Forward (+)
33711749 .. 33713300
1552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00241430.1

Sequence Viewer

Length: 678 bp
ATGTCTCTGGTGATAGAGAAACCAGCCGGCAAGGAGGTGGGCTGCGACCCGGCGCAACTGGCGAAACGCGGATGGCTCAAGGACGACGACCTCAGAGAGCCGACCTGCATACGCATGTTGCCGATGAAAAACAAGGACGACGACGAGATCTGGGTTCCGGCACAGTACTGTAACAAGCCTGAAGAACCTCCTAGTGATGAGGAGCTAAAACGCCTGTCTCACCTTTTGGCAGAAGAACCAGACAAGCTCACAAACGACGAATCAACCATCCTATGTCGCTTTCTCCCTGCCCACCAGTTTGATGAACTCTTCTTTAAACGGGCAAGGGAGAAGAAAGCCAGCAAATCCAAAGAACCAAAGCCTTCTATTCCGTTTGTCTATGAAGGAGGTGGAGATAGTCTGCACAATTGCAGGATTTGTGGCAAGAAGGACCACTTTGATGTAGATTGCTCTTACATGAACTTTGTCCCTCAGGGTGTAAATGTTGGCCCCGAGTATATGGTGGTGTGTCGGATATGTGGTCATAGGGTTAGCCAGCCTGTTGGAGATTGTCAGTCATGTGGTACGGAGGGAGGACGTGCTCTTATGAAGAAACAGTGCTGTAGAGGATTGGATGATGTTAGCTTTGTGAACAAGGACAATGCCAAGGCAATTTGGCCTTGTGTTTTAAGCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

225

Amino Acids

25.33

Weight (kDa)

6.0

Isoelectric Point (pI)

50.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 676
Acc36I ACCTGC 1 cut(s) 113
AccII CGCG 1 cut(s) 69
AciI CCGC 1 cut(s) 69
AcuI CTGAAG 1 cut(s) 201
AfaI GTAC 2 cut(s) 167, 565
AjiI CACGTC 1 cut(s) 578
AluBI AGCT 4 cut(s) 205, 247, 624, 672
AluI AGCT 4 cut(s) 205, 247, 624, 672
Alw21I GWGCWC 1 cut(s) 583
Alw26I GTCTC 2 cut(s) 9, 222
Ama87I CYCGRG 1 cut(s) 491
AoxI GGCC 2 cut(s) 487, 656
ApeKI GCWGC 1 cut(s) 42
AspLEI GCGC 1 cut(s) 55
AspS9I GGNCC 2 cut(s) 430, 488
AsuC2I CCSGG 1 cut(s) 50
AsuHPI GGTGA 2 cut(s) 22, 212
AvaI CYCGRG 1 cut(s) 491
AvaII GGWCC 1 cut(s) 430
AxyI CCTNAGG 1 cut(s) 471
Bbv12I GWGCWC 1 cut(s) 583
BbvI GCAGC 1 cut(s) 29
BccI CCATC 2 cut(s) 66, 275
BcnI CCSGG 1 cut(s) 50
BcoDI GTCTC 2 cut(s) 9, 222
BfaI CTAG 1 cut(s) 192
BfmI CTRYAG 1 cut(s) 601
BfuAI ACCTGC 1 cut(s) 113
BglII AGATCT 1 cut(s) 147
BisI GCNGC 1 cut(s) 43
BlsI GCNGC 1 cut(s) 44
BmcAI AGTACT 1 cut(s) 167
Bme1390I CCNGG 1 cut(s) 50
Bme18I GGWCC 1 cut(s) 430
BmeT110I CYCGRG 1 cut(s) 491
BmgBI CACGTC 1 cut(s) 578
BmgT120I GGNCC 2 cut(s) 430, 488
BmiI GGNNCC 2 cut(s) 156, 490
BmrFI CCNGG 1 cut(s) 50
BpuEI CTTGAG 1 cut(s) 62
BpuMI CCSGG 1 cut(s) 50
BsaJI CCNNGG 1 cut(s) 645
Bse118I RCCGGY 1 cut(s) 26
Bse1I ACTGG 2 cut(s) 63, 295
Bse21I CCTNAGG 1 cut(s) 471
BseDI CCNNGG 1 cut(s) 645
BseGI GGATG 3 cut(s) 77, 267, 619
BseMII CTCAG 2 cut(s) 106, 485
BseNI ACTGG 2 cut(s) 63, 295
BseRI GAGGAG 1 cut(s) 215
BseXI GCAGC 1 cut(s) 29
BsgI GTGCAG 1 cut(s) 386
Bsh1236I CGCG 1 cut(s) 69
BshFI GGCC 2 cut(s) 489, 658
BsiHKAI GWGCWC 1 cut(s) 583
BsiHKCI CYCGRG 1 cut(s) 491
BsiSI CCGG 3 cut(s) 27, 50, 158
BslFI GGGAC 1 cut(s) 452
BsmAI GTCTC 2 cut(s) 9, 222
BsmFI GGGAC 1 cut(s) 452
BsnI GGCC 2 cut(s) 489, 658
BsoBI CYCGRG 1 cut(s) 491
Bsp1286I GDGCHC 1 cut(s) 583
Bsp143I GATC 1 cut(s) 147
BspACI CCGC 1 cut(s) 69
BspANI GGCC 2 cut(s) 489, 658
BspCNI CTCAG 2 cut(s) 105, 484
BspFNI CGCG 1 cut(s) 69
BspLI GGNNCC 2 cut(s) 156, 490
BspMI ACCTGC 1 cut(s) 113
BsrFI RCCGGY 1 cut(s) 26
BsrI ACTGG 2 cut(s) 63, 295
BssAI RCCGGY 1 cut(s) 26
BssECI CCNNGG 1 cut(s) 645
BssMI GATC 1 cut(s) 147
BssT1I CCWWGG 1 cut(s) 645
Bst4CI ACNGT 3 cut(s) 165, 170, 597
Bst6I CTCTTC 1 cut(s) 314
BstC8I GCNNGC 3 cut(s) 28, 340, 536
BstDEI CTNAG 2 cut(s) 92, 471
BstF5I GGATG 3 cut(s) 77, 267, 619
BstFNI CGCG 1 cut(s) 69
BstHHI GCGC 1 cut(s) 55
BstKTI GATC 1 cut(s) 150
BstMAI GTCTC 2 cut(s) 9, 222
BstMBI GATC 1 cut(s) 147
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstNSI RCATGY 1 cut(s) 118
BstSCI CCNGG 1 cut(s) 48
BstSFI CTRYAG 1 cut(s) 601
BstUI CGCG 1 cut(s) 69
BstV1I GCAGC 1 cut(s) 29
BstX2I RGATCY 1 cut(s) 147
BstXI CCANNNNNNTGG 1 cut(s) 542
BstYI RGATCY 1 cut(s) 147
Bsu36I CCTNAGG 1 cut(s) 471
BsuRI GGCC 2 cut(s) 489, 658
BtrI CACGTC 1 cut(s) 578
BtsCI GGATG 3 cut(s) 77, 267, 619
BtsIMutI CAGTG 1 cut(s) 602
BveI ACCTGC 1 cut(s) 113
Cac8I GCNNGC 3 cut(s) 28, 340, 536
CfoI GCGC 1 cut(s) 55
Cfr10I RCCGGY 1 cut(s) 26
Cfr13I GGNCC 2 cut(s) 430, 488
Csp6I GTAC 2 cut(s) 166, 564
CviAII CATG 3 cut(s) 115, 457, 558
CviQI GTAC 2 cut(s) 166, 564
DdeI CTNAG 2 cut(s) 92, 471
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
DraI TTTAAA 1 cut(s) 316
Eam1104I CTCTTC 1 cut(s) 314
EarI CTCTTC 1 cut(s) 314
Eco130I CCWWGG 1 cut(s) 645
Eco47I GGWCC 1 cut(s) 430
Eco57I CTGAAG 1 cut(s) 201
Eco81I CCTNAGG 1 cut(s) 471
Eco88I CYCGRG 1 cut(s) 491
EcoT14I CCWWGG 1 cut(s) 645
ErhI CCWWGG 1 cut(s) 645
FaeI CATG 3 cut(s) 118, 460, 561
FalI AAGNNNNNCTT 2 cut(s) 419, 451
FaqI GGGAC 1 cut(s) 452
FatI CATG 3 cut(s) 114, 456, 557
Fnu4HI GCNGC 1 cut(s) 43
FokI GGATG 3 cut(s) 84, 254, 626
Fsp4HI GCNGC 1 cut(s) 43
FspBI CTAG 1 cut(s) 192
GlaI GCGC 1 cut(s) 54
GluI GCNGC 1 cut(s) 43
HaeIII GGCC 2 cut(s) 489, 658
HapII CCGG 3 cut(s) 27, 50, 158
HhaI GCGC 1 cut(s) 55
Hin1II CATG 3 cut(s) 118, 460, 561
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HindIII AAGCTT 1 cut(s) 670
HinfI GANTC 1 cut(s) 260
HpaII CCGG 3 cut(s) 27, 50, 158
HphI GGTGA 2 cut(s) 22, 212
Hpy166II GTNNAC 1 cut(s) 631
Hpy188I TCNGA 2 cut(s) 95, 513
Hpy8I GTNNAC 1 cut(s) 631
Hpy99I CGWCG 4 cut(s) 89, 143, 146, 260
HpyAV CCTTC 3 cut(s) 372, 377, 421
HpyCH4III ACNGT 3 cut(s) 165, 170, 597
HpyCH4IV ACGT 1 cut(s) 577
HpyCH4V TGCA 3 cut(s) 108, 403, 411
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpyF3I CTNAG 2 cut(s) 92, 471
HpySE526I ACGT 1 cut(s) 577
Hsp92II CATG 3 cut(s) 118, 460, 561
HspAI GCGC 1 cut(s) 53
KroI GCCGGC 1 cut(s) 26
KroNI GCCGGC 1 cut(s) 28
Kzo9I GATC 1 cut(s) 147
LmnI GCTCC 1 cut(s) 202
Lsp1109I GCAGC 1 cut(s) 29
MaeI CTAG 1 cut(s) 192
MaeII ACGT 1 cut(s) 577
MaeIII GTNAC 1 cut(s) 170
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MboII GAAGA 5 cut(s) 194, 245, 301, 343, 601
MfeI CAATTG 1 cut(s) 406
MflI RGATCY 1 cut(s) 147
MhlI GDGCHC 1 cut(s) 583
MluCI AATT 2 cut(s) 406, 651
MmeI TCCRAC 2 cut(s) 491, 523
MnlI CCTC 9 cut(s) 28, 101, 193, 198, 380, 480, 562, 566, 599
MroNI GCCGGC 1 cut(s) 26
MseI TTAA 2 cut(s) 315, 668
MslI CAYNNNNRTG 2 cut(s) 113, 438
MspI CCGG 3 cut(s) 27, 50, 158
MspR9I CCNGG 1 cut(s) 50
MunI CAATTG 1 cut(s) 406
MvnI CGCG 1 cut(s) 69
MwoI GCNNNNNNNGC 1 cut(s) 59
NaeI GCCGGC 1 cut(s) 28
NciI CCSGG 1 cut(s) 50
NdeII GATC 1 cut(s) 147
NgoMIV GCCGGC 1 cut(s) 26
NlaIII CATG 3 cut(s) 118, 460, 561
NlaIV GGNNCC 2 cut(s) 156, 490
NspI RCATGY 1 cut(s) 118
PdiI GCCGGC 1 cut(s) 28
PfeI GAWTC 1 cut(s) 260
PkrI GCNGC 1 cut(s) 44
PsiI TTATAA 1 cut(s) 676
PspN4I GGNNCC 2 cut(s) 156, 490
PspPI GGNCC 2 cut(s) 430, 488
PsuI RGATCY 1 cut(s) 147
RsaI GTAC 2 cut(s) 167, 565
RsaNI GTAC 2 cut(s) 166, 564
RseI CAYNNNNRTG 2 cut(s) 113, 438
SaqAI TTAA 2 cut(s) 315, 668
SatI GCNGC 1 cut(s) 43
Sau3AI GATC 1 cut(s) 147
Sau96I GGNCC 2 cut(s) 430, 488
ScaI AGTACT 1 cut(s) 167
ScrFI CCNGG 1 cut(s) 50
SduI GDGCHC 1 cut(s) 583
SfcI CTRYAG 1 cut(s) 601
SinI GGWCC 1 cut(s) 430
SmiMI CAYNNNNRTG 2 cut(s) 113, 438
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 2 cut(s) 406, 651
SsiI CCGC 1 cut(s) 69
SspMI CTAG 1 cut(s) 192
StyD4I CCNGG 1 cut(s) 48
StyI CCWWGG 1 cut(s) 645
TaaI ACNGT 3 cut(s) 165, 170, 597
TaiI ACGT 1 cut(s) 580
TasI AATT 2 cut(s) 406, 651
TatI WGTACW 1 cut(s) 165
TfiI GAWTC 1 cut(s) 260
Tru1I TTAA 2 cut(s) 315, 668
Tru9I TTAA 2 cut(s) 315, 668
TscAI CASTG 1 cut(s) 602
TseI GCWGC 1 cut(s) 42
TspDTI ATGAA 5 cut(s) 140, 318, 396, 473, 602
TspGWI ACGGA 2 cut(s) 360, 581
TspRI CASTG 1 cut(s) 602
VpaK11BI GGWCC 1 cut(s) 430
XceI RCATGY 1 cut(s) 118
XspI CTAG 1 cut(s) 192
ZrmI AGTACT 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.