pycom13g20570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000520
Physical Location & Seq
Forward (+)
16723709 .. 16724548
840 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g20570.2

Sequence Viewer

Length: 639 bp
ATGATCCGGGTACCCAGAGACGACGCCAAGCGCGGAGGCGGAGGCAGAGGCAGAGGAAGGGCTAATTGGCACGCGCGATTAGATTCCGGGCGGGGGAAGAATCCAGCCCAACCGGCGGAGCTCCGAGATGAGAAGAAAGAAACAAAAGCTGTCGAAAGCTCTATGATCAAACTCCAACTTGGTGATGATACTCCTACTTCAAAGAAGAAACGTTGCCGTGAGTCAAAGAAGAAACGTTACCGTGAGTCTAAGAAATGCCATTCTCAGAATCAGCATTGTGCAGTTTGCCTTAAGGACGGCCACCTCCAACATCTGTGTCCCTACCGGAAACGTGTCCCGTTGGGCGTAACTGAAGTTGGAAAGGGCTATATACTAATTTGTAGGACTTGTGGTTTAGTGGGTAACGTCTGCGGTCATGGCCGCTCTTATGCTCGTTTCTATAGGCGTGCTGCGGCTCTGCCACATCAGTACCCAACCGACGAGGAAGTGGAGCAATTCATGGCAAGACAGAGAGAAATGGCTGAAATGTCCAGGGCACGAGTGGAGAGAGGTGAACCATCCTTATGGGATGATACCGATTCCAATTCCCCTTCTGATATCTCTTCCGATTCCTCTTCTGATTCCTCTTCCGAGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

23.89

Weight (kDa)

9.52

Isoelectric Point (pI)

56.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 10
AccB1I GGYRCC 1 cut(s) 10
AccBSI CCGCTC 1 cut(s) 423
AccII CGCG 3 cut(s) 33, 74, 76
AciI CCGC 7 cut(s) 33, 39, 91, 116, 411, 421, 452
AclI AACGTT 2 cut(s) 211, 235
AcoI YGGCCR 2 cut(s) 298, 418
AcuI CTGAAG 1 cut(s) 372
AcyI GRCGYC 1 cut(s) 24
AfaI GTAC 2 cut(s) 12, 470
AfiI CCNNNNNNNGG 2 cut(s) 93, 115
AflII CTTAAG 1 cut(s) 290
AflIII ACRYGT 1 cut(s) 331
AgsI TTSAA 1 cut(s) 201
AjnI CCWGG 1 cut(s) 530
AjuI GAANNNNNNNTTGG 2 cut(s) 49, 81
AluBI AGCT 3 cut(s) 121, 149, 159
AluI AGCT 3 cut(s) 121, 149, 159
Alw21I GWGCWC 1 cut(s) 123
Alw26I GTCTC 1 cut(s) 12
AoxI GGCC 2 cut(s) 298, 418
ApeKI GCWGC 1 cut(s) 449
Asp718I GGTACC 1 cut(s) 10
AspLEI GCGC 2 cut(s) 33, 76
AsuC2I CCSGG 2 cut(s) 8, 88
AsuHPI GGTGA 2 cut(s) 194, 563
BaeGI GKGCMC 1 cut(s) 538
BaeI ACNNNNGTAYC 2 cut(s) 452, 485
BanI GGYRCC 1 cut(s) 10
BanII GRGCYC 1 cut(s) 123
BarI GAAGNNNNNNTAC 2 cut(s) 221, 253
BauI CACGAG 1 cut(s) 537
Bbv12I GWGCWC 1 cut(s) 123
BbvI GCAGC 1 cut(s) 436
BccI CCATC 1 cut(s) 565
BceAI ACGGC 2 cut(s) 201, 313
BciT130I CCWGG 1 cut(s) 532
BclI TGATCA 1 cut(s) 165
BcnI CCSGG 2 cut(s) 8, 88
BcoDI GTCTC 1 cut(s) 12
BfmI CTRYAG 1 cut(s) 439
BfrI CTTAAG 1 cut(s) 290
BglI GCCNNNNNGGC 1 cut(s) 113
BisI GCNGC 3 cut(s) 421, 450, 453
BlsI GCNGC 3 cut(s) 422, 451, 454
Bme1390I CCNGG 3 cut(s) 8, 88, 532
BmiI GGNNCC 1 cut(s) 12
BmrFI CCNGG 3 cut(s) 8, 88, 532
BpuMI CCSGG 2 cut(s) 8, 88
BsaHI GRCGYC 1 cut(s) 24
BsaJI CCNNGG 1 cut(s) 531
BsaWI WCCGGW 1 cut(s) 324
Bsc4I CCNNNNNNNGG 2 cut(s) 93, 115
Bse118I RCCGGY 1 cut(s) 112
BseBI CCWGG 1 cut(s) 532
BseDI CCNNGG 1 cut(s) 531
BseGI GGATG 2 cut(s) 557, 574
BseLI CCNNNNNNNGG 2 cut(s) 93, 115
BseMII CTCAG 1 cut(s) 278
BseSI GKGCMC 1 cut(s) 538
BseXI GCAGC 1 cut(s) 436
BsgI GTGCAG 1 cut(s) 300
Bsh1236I CGCG 3 cut(s) 33, 74, 76
BshFI GGCC 2 cut(s) 300, 420
BshNI GGYRCC 1 cut(s) 10
BsiHKAI GWGCWC 1 cut(s) 123
BsiSI CCGG 4 cut(s) 7, 87, 113, 325
BslFI GGGAC 2 cut(s) 303, 320
BslI CCNNNNNNNGG 2 cut(s) 93, 115
BsmAI GTCTC 1 cut(s) 12
BsmBI CGTCTC 1 cut(s) 12
BsmFI GGGAC 2 cut(s) 303, 320
BsnI GGCC 2 cut(s) 300, 420
Bsp1286I GDGCHC 2 cut(s) 123, 538
Bsp143I GATC 2 cut(s) 3, 165
BspACI CCGC 7 cut(s) 33, 39, 91, 116, 411, 421, 452
BspANI GGCC 2 cut(s) 300, 420
BspCNI CTCAG 1 cut(s) 277
BspFNI CGCG 3 cut(s) 33, 74, 76
BspLI GGNNCC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 10
BspTI CTTAAG 1 cut(s) 290
BsrBI CCGCTC 1 cut(s) 423
BsrFI RCCGGY 1 cut(s) 112
BssAI RCCGGY 1 cut(s) 112
BssECI CCNNGG 1 cut(s) 531
BssMI GATC 2 cut(s) 3, 165
BssNI GRCGYC 1 cut(s) 24
BssSI CACGAG 1 cut(s) 537
Bst2BI CACGAG 1 cut(s) 537
Bst2UI CCWGG 1 cut(s) 532
Bst4CI ACNGT 1 cut(s) 242
Bst6I CTCTTC 3 cut(s) 607, 619, 631
BstACI GRCGYC 1 cut(s) 24
BstAFI CTTAAG 1 cut(s) 290
BstC8I GCNNGC 2 cut(s) 72, 447
BstDEI CTNAG 2 cut(s) 249, 264
BstF5I GGATG 2 cut(s) 557, 574
BstFNI CGCG 3 cut(s) 33, 74, 76
BstHHI GCGC 2 cut(s) 33, 76
BstKTI GATC 2 cut(s) 6, 168
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 2 cut(s) 3, 165
BstMWI GCNNNNNNNGC 2 cut(s) 113, 417
BstNI CCWGG 1 cut(s) 532
BstSCI CCNGG 3 cut(s) 6, 86, 530
BstSFI CTRYAG 1 cut(s) 439
BstSLI GKGCMC 1 cut(s) 538
BstUI CGCG 3 cut(s) 33, 74, 76
BstV1I GCAGC 1 cut(s) 436
BstXI CCANNNNNNTGG 1 cut(s) 564
BsuRI GGCC 2 cut(s) 300, 420
BtsCI GGATG 2 cut(s) 557, 574
Cac8I GCNNGC 2 cut(s) 72, 447
CfoI GCGC 2 cut(s) 33, 76
Cfr10I RCCGGY 1 cut(s) 112
CseI GACGC 1 cut(s) 32
Csp6I GTAC 2 cut(s) 11, 469
CviAII CATG 2 cut(s) 416, 499
CviQI GTAC 2 cut(s) 11, 469
DdeI CTNAG 2 cut(s) 249, 264
DpnI GATC 2 cut(s) 5, 167
DpnII GATC 2 cut(s) 3, 165
EaeI YGGCCR 2 cut(s) 298, 418
Eam1104I CTCTTC 3 cut(s) 607, 619, 631
EarI CTCTTC 3 cut(s) 607, 619, 631
EciI GGCGGA 2 cut(s) 54, 131
Ecl136II GAGCTC 1 cut(s) 121
Eco24I GRGCYC 1 cut(s) 123
Eco32I GATATC 1 cut(s) 598
Eco53kI GAGCTC 1 cut(s) 121
Eco57I CTGAAG 1 cut(s) 372
EcoICRI GAGCTC 1 cut(s) 121
EcoRII CCWGG 1 cut(s) 530
EcoRV GATATC 1 cut(s) 598
EcoT38I GRGCYC 1 cut(s) 123
Esp3I CGTCTC 1 cut(s) 12
FaeI CATG 2 cut(s) 419, 502
FaiI YATR 9 cut(s) 164, 369, 371, 417, 429, 441, 500, 565, 637
FaqI GGGAC 2 cut(s) 303, 320
FatI CATG 2 cut(s) 415, 498
FauI CCCGC 1 cut(s) 84
FbaI TGATCA 1 cut(s) 165
Fnu4HI GCNGC 3 cut(s) 421, 450, 453
FokI GGATG 2 cut(s) 544, 581
FriOI GRGCYC 1 cut(s) 123
Fsp4HI GCNGC 3 cut(s) 421, 450, 453
GlaI GCGC 2 cut(s) 32, 75
GluI GCNGC 3 cut(s) 421, 450, 453
HaeIII GGCC 2 cut(s) 300, 420
HapII CCGG 4 cut(s) 7, 87, 113, 325
HgaI GACGC 1 cut(s) 32
HhaI GCGC 2 cut(s) 33, 76
Hin1I GRCGYC 1 cut(s) 24
Hin1II CATG 2 cut(s) 419, 502
Hin6I GCGC 2 cut(s) 31, 74
HinP1I GCGC 2 cut(s) 31, 74
HinfI GANTC 8 cut(s) 83, 100, 221, 245, 268, 578, 608, 620
HpaII CCGG 4 cut(s) 7, 87, 113, 325
HphI GGTGA 2 cut(s) 194, 563
Hpy166II GTNNAC 1 cut(s) 554
Hpy188I TCNGA 6 cut(s) 125, 267, 595, 607, 619, 631
Hpy8I GTNNAC 1 cut(s) 554
Hpy99I CGWCG 2 cut(s) 26, 482
HpyAV CCTTC 2 cut(s) 51, 600
HpyCH4III ACNGT 1 cut(s) 242
HpyCH4IV ACGT 4 cut(s) 211, 235, 331, 405
HpyCH4V TGCA 1 cut(s) 281
HpyF10VI GCNNNNNNNGC 2 cut(s) 113, 417
HpyF3I CTNAG 2 cut(s) 249, 264
HpySE526I ACGT 4 cut(s) 211, 235, 331, 405
Hsp92I GRCGYC 1 cut(s) 24
Hsp92II CATG 2 cut(s) 419, 502
HspAI GCGC 2 cut(s) 31, 74
KpnI GGTACC 1 cut(s) 14
Ksp22I TGATCA 1 cut(s) 165
Kzo9I GATC 2 cut(s) 3, 165
LmnI GCTCC 3 cut(s) 118, 126, 490
LpnPI CCDG 8 cut(s) 20, 28, 100, 117, 126, 338, 517, 544
Lsp1109I GCAGC 1 cut(s) 436
MaeII ACGT 4 cut(s) 211, 235, 331, 405
MaeIII GTNAC 3 cut(s) 236, 346, 401
MalI GATC 2 cut(s) 5, 167
MbiI CCGCTC 1 cut(s) 423
MboI GATC 2 cut(s) 3, 165
MboII GAAGA 7 cut(s) 109, 145, 217, 241, 594, 606, 618
MhlI GDGCHC 2 cut(s) 123, 538
MluCI AATT 4 cut(s) 64, 375, 494, 583
MlyI GAGTC 2 cut(s) 230, 254
MmeI TCCRAC 3 cut(s) 199, 331, 337
MnlI CCTC 9 cut(s) 29, 35, 41, 47, 314, 475, 542, 622, 634
MseI TTAA 1 cut(s) 291
MslI CAYNNNNRTG 1 cut(s) 562
MspCI CTTAAG 1 cut(s) 290
MspI CCGG 4 cut(s) 7, 87, 113, 325
MspR9I CCNGG 3 cut(s) 8, 88, 532
MvaI CCWGG 1 cut(s) 532
MvnI CGCG 3 cut(s) 33, 74, 76
MwoI GCNNNNNNNGC 2 cut(s) 113, 417
NciI CCSGG 2 cut(s) 8, 88
NdeII GATC 2 cut(s) 3, 165
NlaIII CATG 2 cut(s) 419, 502
NlaIV GGNNCC 1 cut(s) 12
PfeI GAWTC 6 cut(s) 83, 100, 268, 578, 608, 620
PkrI GCNGC 3 cut(s) 422, 451, 454
PleI GAGTC 2 cut(s) 229, 253
PpsI GAGTC 2 cut(s) 229, 253
Psp124BI GAGCTC 1 cut(s) 123
Psp1406I AACGTT 2 cut(s) 211, 235
Psp6I CCWGG 1 cut(s) 530
PspGI CCWGG 1 cut(s) 530
PspN4I GGNNCC 1 cut(s) 12
RsaI GTAC 2 cut(s) 12, 470
RsaNI GTAC 2 cut(s) 11, 469
RseI CAYNNNNRTG 1 cut(s) 562
SacI GAGCTC 1 cut(s) 123
SaqAI TTAA 1 cut(s) 291
SatI GCNGC 3 cut(s) 421, 450, 453
Sau3AI GATC 2 cut(s) 3, 165
SchI GAGTC 2 cut(s) 230, 254
ScrFI CCNGG 3 cut(s) 8, 88, 532
SduI GDGCHC 2 cut(s) 123, 538
SetI ASST 9 cut(s) 123, 151, 161, 214, 238, 306, 334, 408, 553
SfcI CTRYAG 1 cut(s) 439
SmiMI CAYNNNNRTG 1 cut(s) 562
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 4 cut(s) 64, 375, 494, 583
SsiI CCGC 7 cut(s) 33, 39, 91, 116, 411, 421, 452
SstI GAGCTC 1 cut(s) 123
StyD4I CCNGG 3 cut(s) 6, 86, 530
TaaI ACNGT 1 cut(s) 242
TaiI ACGT 4 cut(s) 214, 238, 334, 408
TaqI TCGA 1 cut(s) 153
TasI AATT 4 cut(s) 64, 375, 494, 583
TauI GCSGC 2 cut(s) 423, 455
TfiI GAWTC 6 cut(s) 83, 100, 268, 578, 608, 620
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TseI GCWGC 1 cut(s) 449
TspDTI ATGAA 1 cut(s) 487
Vha464I CTTAAG 1 cut(s) 290
XcmI CCANNNNNNNNNTGG 1 cut(s) 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.