Rh1AG336500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000520
Physical Location & Seq
Forward (+)
57055813 .. 57056364
552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG336500.1

Sequence Viewer

Length: 207 bp
ATGGATATTTCTGGAATCACAGTGAGACCAGCAGTGGGCAAGGAGAAGGAGAAGCACTCTGAAGAAGATCTAAAGGCTGCCGCCAGAGTCATCAAAAAAGAAGGATGTCAGATTTGTGGTGATGATCACCAACACATTATTCGTTGCCCGTACTTGGACTGTGTTCCACCTGGTGCAACTGTTGGCCCTGACTATGAGACTACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.42

Weight (kDa)

5.48

Isoelectric Point (pI)

27.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 81
AcuI CTGAAG 1 cut(s) 81
AdeI CACNNNGTG 1 cut(s) 173
AfaI GTAC 1 cut(s) 152
AfiI CCNNNNNNNGG 2 cut(s) 35, 154
AjnI CCWGG 1 cut(s) 169
AjuI GAANNNNNNNTTGG 2 cut(s) 123, 155
Alw26I GTCTC 2 cut(s) 19, 191
AoxI GGCC 1 cut(s) 184
ApeKI GCWGC 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 185
AsuHPI GGTGA 2 cut(s) 119, 131
BbvI GCAGC 1 cut(s) 64
BciT130I CCWGG 1 cut(s) 171
BclI TGATCA 1 cut(s) 124
BcoDI GTCTC 2 cut(s) 19, 191
BfaI CTAG 1 cut(s) 205
BglII AGATCT 1 cut(s) 67
BisI GCNGC 2 cut(s) 78, 81
BlsI GCNGC 2 cut(s) 79, 82
Bme1390I CCNGG 1 cut(s) 171
BmgT120I GGNCC 1 cut(s) 185
BmrFI CCNGG 1 cut(s) 171
BplI GAGNNNNNCTC 2 cut(s) 41, 73
BsaI GGTCTC 1 cut(s) 19
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 154
BseBI CCWGG 1 cut(s) 171
BseGI GGATG 1 cut(s) 110
BseLI CCNNNNNNNGG 2 cut(s) 35, 154
BseXI GCAGC 1 cut(s) 64
BshFI GGCC 1 cut(s) 186
BslI CCNNNNNNNGG 2 cut(s) 35, 154
BsmAI GTCTC 2 cut(s) 19, 191
BsnI GGCC 1 cut(s) 186
Bso31I GGTCTC 1 cut(s) 19
Bsp143I GATC 2 cut(s) 67, 124
BspACI CCGC 1 cut(s) 81
BspANI GGCC 1 cut(s) 186
BspTNI GGTCTC 1 cut(s) 19
BssMI GATC 2 cut(s) 67, 124
Bst2UI CCWGG 1 cut(s) 171
Bst4CI ACNGT 3 cut(s) 22, 161, 181
BstF5I GGATG 1 cut(s) 110
BstKTI GATC 2 cut(s) 70, 127
BstMAI GTCTC 2 cut(s) 19, 191
BstMBI GATC 2 cut(s) 67, 124
BstNI CCWGG 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 169
BstV1I GCAGC 1 cut(s) 64
BstX2I RGATCY 1 cut(s) 67
BstYI RGATCY 1 cut(s) 67
BsuRI GGCC 1 cut(s) 186
BtsCI GGATG 1 cut(s) 110
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 2 cut(s) 27, 39
Cfr13I GGNCC 1 cut(s) 185
CsiI ACCWGGT 1 cut(s) 169
Csp6I GTAC 1 cut(s) 151
CviJI RGCY 2 cut(s) 77, 186
CviKI_1 RGCY 2 cut(s) 77, 186
CviQI GTAC 1 cut(s) 151
DpnI GATC 2 cut(s) 69, 126
DpnII GATC 2 cut(s) 67, 124
DraIII CACNNNGTG 1 cut(s) 173
Eco31I GGTCTC 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 81
EcoRII CCWGG 1 cut(s) 169
FaiI YATR 1 cut(s) 195
FbaI TGATCA 1 cut(s) 124
Fnu4HI GCNGC 2 cut(s) 78, 81
FokI GGATG 1 cut(s) 117
Fsp4HI GCNGC 2 cut(s) 78, 81
FspBI CTAG 1 cut(s) 205
GluI GCNGC 2 cut(s) 78, 81
HaeIII GGCC 1 cut(s) 186
HinfI GANTC 2 cut(s) 15, 87
HphI GGTGA 2 cut(s) 119, 131
Hpy188I TCNGA 2 cut(s) 61, 111
Hpy188III TCNNGA 1 cut(s) 12
HpyAV CCTTC 2 cut(s) 40, 95
HpyCH4III ACNGT 3 cut(s) 22, 161, 181
HpyCH4V TGCA 1 cut(s) 176
Ksp22I TGATCA 1 cut(s) 124
Kzo9I GATC 2 cut(s) 67, 124
LpnPI CCDG 5 cut(s) 42, 97, 156, 183, 201
Lsp1109I GCAGC 1 cut(s) 64
MabI ACCWGGT 1 cut(s) 169
MaeI CTAG 1 cut(s) 205
MalI GATC 2 cut(s) 69, 126
MboI GATC 2 cut(s) 67, 124
MboII GAAGA 2 cut(s) 74, 77
MflI RGATCY 1 cut(s) 67
MlyI GAGTC 1 cut(s) 96
MspR9I CCNGG 1 cut(s) 171
MvaI CCWGG 1 cut(s) 171
NdeII GATC 2 cut(s) 67, 124
PfeI GAWTC 1 cut(s) 15
PkrI GCNGC 2 cut(s) 79, 82
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PspPI GGNCC 1 cut(s) 185
PsuI RGATCY 1 cut(s) 67
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
SatI GCNGC 2 cut(s) 78, 81
Sau3AI GATC 2 cut(s) 67, 124
Sau96I GGNCC 1 cut(s) 185
SchI GAGTC 1 cut(s) 96
ScrFI CCNGG 1 cut(s) 171
SetI ASST 2 cut(s) 172, 206
SexAI ACCWGGT 1 cut(s) 169
SgeI CNNG 9 cut(s) 24, 41, 52, 96, 160, 166, 182, 183, 200
SsiI CCGC 1 cut(s) 81
SspMI CTAG 1 cut(s) 205
StyD4I CCNGG 1 cut(s) 169
TaaI ACNGT 3 cut(s) 22, 161, 181
TauI GCSGC 1 cut(s) 83
TfiI GAWTC 1 cut(s) 15
TscAI CASTG 2 cut(s) 27, 39
TseI GCWGC 1 cut(s) 77
TspRI CASTG 2 cut(s) 27, 39
XspI CTAG 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.