pycom06g13900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0000520
Physical Location & Seq
Forward (+)
18762732 .. 18764231
1500 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g13900.2

Sequence Viewer

Length: 552 bp
ATGAAACGCCGGTTCGAAGGCGGACCAGGAGAACCCGCGGAGGGGGAGAGTCCAATTCCGGCCCAACCCACGAAGTTCCGAGATGCAGGTAAGAATAAAGAAATAGATTCTGTTAAAGACTCTCCAACGACTCATCTCACAAAAGTAGAGGCTGCTCAAGACTCTCAGACTCAATTCCAGCTTGAGGAGAAGGATACTGTTCCAACTTTTCTCAAGGAGGACAGTAATCCCACATGCTTAGCTGATGAACTCATAATCAAGCCAGGCACATTTTCCTCTATGCAGTCTAGTTGTGCAATTTGCTCTGAGCCTGACCACTGGTATGATATGTGCCCCTGGAGGAAACGGCTCCCAAAAGGCATAACTCAGGTTGGCAAGGGCTATGTAGTAGAGCGCGGGCGTGCTGTTCGCCTTGAGTATGTTTATTGTTATGAGATTGGTACCCACATGCTTAATGACTGCCCGCATTTTAAAAAACTACTTGAGGAAAATGGAGGGGATGCGCCCTTGCACCTCTGTTTCCTCGGTCATAGACCACTTGCTGATTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

20.53

Weight (kDa)

5.7

Isoelectric Point (pI)

45.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 77
Acc65I GGTACC 1 cut(s) 440
AccB1I GGYRCC 1 cut(s) 440
AccII CGCG 2 cut(s) 38, 396
AciI CCGC 5 cut(s) 21, 36, 38, 396, 464
AfaI GTAC 1 cut(s) 442
AfiI CCNNNNNNNGG 3 cut(s) 41, 42, 184
AjnI CCWGG 3 cut(s) 25, 262, 335
AluBI AGCT 2 cut(s) 181, 242
AluI AGCT 2 cut(s) 181, 242
AoxI GGCC 1 cut(s) 60
ApeKI GCWGC 1 cut(s) 152
Asp718I GGTACC 1 cut(s) 440
AspLEI GCGC 2 cut(s) 396, 505
AspS9I GGNCC 2 cut(s) 23, 61
AsuII TTCGAA 1 cut(s) 15
AvaII GGWCC 1 cut(s) 23
BaeGI GKGCMC 1 cut(s) 335
BanI GGYRCC 1 cut(s) 440
BbvI GCAGC 1 cut(s) 139
BceAI ACGGC 1 cut(s) 362
BciT130I CCWGG 3 cut(s) 27, 264, 337
BciVI GTATCC 1 cut(s) 187
BfaI CTAG 1 cut(s) 288
BfuAI ACCTGC 1 cut(s) 77
BfuI GTATCC 1 cut(s) 187
BisI GCNGC 1 cut(s) 153
BlpI GCTNAGC 1 cut(s) 238
BlsI GCNGC 1 cut(s) 154
Bme1390I CCNGG 3 cut(s) 27, 264, 337
Bme18I GGWCC 1 cut(s) 23
BmgT120I GGNCC 2 cut(s) 23, 61
BmiI GGNNCC 2 cut(s) 350, 442
BmrFI CCNGG 3 cut(s) 27, 264, 337
BmsI GCATC 2 cut(s) 73, 490
BpmI CTGGAG 1 cut(s) 358
Bpu1102I GCTNAGC 1 cut(s) 238
Bpu14I TTCGAA 1 cut(s) 15
BpuEI CTTGAG 5 cut(s) 141, 197, 203, 434, 503
BsaJI CCNNGG 3 cut(s) 36, 335, 523
Bsc4I CCNNNNNNNGG 3 cut(s) 41, 42, 184
Bse118I RCCGGY 1 cut(s) 9
Bse1I ACTGG 1 cut(s) 323
BseBI CCWGG 3 cut(s) 27, 264, 337
BseDI CCNNGG 3 cut(s) 36, 335, 523
BseGI GGATG 1 cut(s) 505
BseLI CCNNNNNNNGG 3 cut(s) 41, 42, 184
BseMII CTCAG 3 cut(s) 179, 297, 380
BseNI ACTGG 1 cut(s) 323
BseRI GAGGAG 1 cut(s) 200
BseSI GKGCMC 1 cut(s) 335
BseXI GCAGC 1 cut(s) 139
Bsh1236I CGCG 2 cut(s) 38, 396
BshFI GGCC 1 cut(s) 62
BshNI GGYRCC 1 cut(s) 440
BsiSI CCGG 2 cut(s) 10, 59
BslI CCNNNNNNNGG 3 cut(s) 41, 42, 184
BsnI GGCC 1 cut(s) 62
Bsp119I TTCGAA 1 cut(s) 15
Bsp1286I GDGCHC 1 cut(s) 335
Bsp1720I GCTNAGC 1 cut(s) 238
BspACI CCGC 5 cut(s) 21, 36, 38, 396, 464
BspANI GGCC 1 cut(s) 62
BspCNI CTCAG 3 cut(s) 178, 298, 379
BspFNI CGCG 2 cut(s) 38, 396
BspLI GGNNCC 2 cut(s) 350, 442
BspMI ACCTGC 1 cut(s) 77
BspT104I TTCGAA 1 cut(s) 15
BspT107I GGYRCC 1 cut(s) 440
BsrFI RCCGGY 1 cut(s) 9
BsrI ACTGG 1 cut(s) 323
BssAI RCCGGY 1 cut(s) 9
BssECI CCNNGG 3 cut(s) 36, 335, 523
Bst2UI CCWGG 3 cut(s) 27, 264, 337
Bst4CI ACNGT 2 cut(s) 199, 224
BstBI TTCGAA 1 cut(s) 15
BstC8I GCNNGC 3 cut(s) 398, 402, 464
BstDEI CTNAG 4 cut(s) 165, 238, 306, 366
BstDSI CCRYGG 1 cut(s) 36
BstF5I GGATG 1 cut(s) 505
BstFNI CGCG 2 cut(s) 38, 396
BstHHI GCGC 2 cut(s) 396, 505
BstNI CCWGG 3 cut(s) 27, 264, 337
BstNSI RCATGY 2 cut(s) 237, 451
BstSCI CCNGG 3 cut(s) 25, 262, 335
BstSLI GKGCMC 1 cut(s) 335
BstUI CGCG 2 cut(s) 38, 396
BstV1I GCAGC 1 cut(s) 139
BsuI GTATCC 1 cut(s) 187
BsuRI GGCC 1 cut(s) 62
BtgI CCRYGG 1 cut(s) 36
BtsCI GGATG 1 cut(s) 505
BtsIMutI CAGTG 1 cut(s) 316
BveI ACCTGC 1 cut(s) 77
Cac8I GCNNGC 3 cut(s) 398, 402, 464
CfoI GCGC 2 cut(s) 396, 505
Cfr10I RCCGGY 1 cut(s) 9
Cfr13I GGNCC 2 cut(s) 23, 61
Cfr42I CCGCGG 1 cut(s) 39
Csp6I GTAC 1 cut(s) 441
CviAII CATG 2 cut(s) 234, 448
CviJI RGCY 8 cut(s) 62, 152, 181, 242, 262, 310, 349, 381
CviKI_1 RGCY 8 cut(s) 62, 152, 181, 242, 262, 310, 349, 381
CviQI GTAC 1 cut(s) 441
DdeI CTNAG 4 cut(s) 165, 238, 306, 366
DraI TTTAAA 1 cut(s) 472
EciI GGCGGA 1 cut(s) 36
Eco47I GGWCC 1 cut(s) 23
EcoRII CCWGG 3 cut(s) 25, 262, 335
FaeI CATG 2 cut(s) 237, 451
FatI CATG 2 cut(s) 233, 447
FauI CCCGC 3 cut(s) 43, 389, 471
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 1 cut(s) 512
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 1 cut(s) 288
GlaI GCGC 2 cut(s) 395, 504
GluI GCNGC 1 cut(s) 153
GsuI CTGGAG 1 cut(s) 358
HaeIII GGCC 1 cut(s) 62
HapII CCGG 2 cut(s) 10, 59
HhaI GCGC 2 cut(s) 396, 505
Hin1II CATG 2 cut(s) 237, 451
Hin6I GCGC 2 cut(s) 394, 503
HinP1I GCGC 2 cut(s) 394, 503
HinfI GANTC 6 cut(s) 49, 107, 119, 130, 161, 169
HpaII CCGG 2 cut(s) 10, 59
Hpy188I TCNGA 3 cut(s) 80, 168, 307
Hpy188III TCNNGA 1 cut(s) 158
HpyAV CCTTC 2 cut(s) 11, 184
HpyCH4III ACNGT 2 cut(s) 199, 224
HpyCH4V TGCA 4 cut(s) 86, 283, 296, 511
HpyF3I CTNAG 4 cut(s) 165, 238, 306, 366
Hsp92II CATG 2 cut(s) 237, 451
HspAI GCGC 2 cut(s) 394, 503
KpnI GGTACC 1 cut(s) 444
KspI CCGCGG 1 cut(s) 39
LmnI GCTCC 1 cut(s) 354
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 2 cut(s) 73, 490
MaeI CTAG 1 cut(s) 288
MhlI GDGCHC 1 cut(s) 335
MluCI AATT 3 cut(s) 54, 173, 297
MlyI GAGTC 5 cut(s) 58, 113, 124, 155, 163
MmeI TCCRAC 2 cut(s) 149, 227
MseI TTAA 3 cut(s) 114, 453, 471
MslI CAYNNNNRTG 1 cut(s) 321
MspA1I CMGCKG 1 cut(s) 38
MspI CCGG 2 cut(s) 10, 59
MspR9I CCNGG 3 cut(s) 27, 264, 337
MvaI CCWGG 3 cut(s) 27, 264, 337
MvnI CGCG 2 cut(s) 38, 396
NlaIII CATG 2 cut(s) 237, 451
NlaIV GGNNCC 2 cut(s) 350, 442
NspI RCATGY 2 cut(s) 237, 451
NspV TTCGAA 1 cut(s) 15
PfeI GAWTC 1 cut(s) 107
PkrI GCNGC 1 cut(s) 154
PleI GAGTC 5 cut(s) 57, 113, 124, 155, 163
PpsI GAGTC 5 cut(s) 57, 113, 124, 155, 163
Psp6I CCWGG 3 cut(s) 25, 262, 335
PspGI CCWGG 3 cut(s) 25, 262, 335
PspN4I GGNNCC 2 cut(s) 350, 442
PspPI GGNCC 2 cut(s) 23, 61
RsaI GTAC 1 cut(s) 442
RsaNI GTAC 1 cut(s) 441
RseI CAYNNNNRTG 1 cut(s) 321
SacII CCGCGG 1 cut(s) 39
SaqAI TTAA 3 cut(s) 114, 453, 471
SatI GCNGC 1 cut(s) 153
Sau96I GGNCC 2 cut(s) 23, 61
SchI GAGTC 5 cut(s) 58, 113, 124, 155, 163
ScrFI CCNGG 3 cut(s) 27, 264, 337
SduI GDGCHC 1 cut(s) 335
SetI ASST 5 cut(s) 91, 183, 244, 372, 516
SfaNI GCATC 2 cut(s) 73, 490
Sfr303I CCGCGG 1 cut(s) 39
SfuI TTCGAA 1 cut(s) 15
SgrBI CCGCGG 1 cut(s) 39
SinI GGWCC 1 cut(s) 23
SmiMI CAYNNNNRTG 1 cut(s) 321
SmlI CTYRAG 5 cut(s) 156, 182, 212, 413, 482
SmoI CTYRAG 5 cut(s) 156, 182, 212, 413, 482
Sse9I AATT 3 cut(s) 54, 173, 297
SsiI CCGC 5 cut(s) 21, 36, 38, 396, 464
SspMI CTAG 1 cut(s) 288
StyD4I CCNGG 3 cut(s) 25, 262, 335
TaaI ACNGT 2 cut(s) 199, 224
TaqI TCGA 1 cut(s) 15
TaqII GACCGA 1 cut(s) 515
TasI AATT 3 cut(s) 54, 173, 297
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 3 cut(s) 114, 453, 471
Tru9I TTAA 3 cut(s) 114, 453, 471
TscAI CASTG 1 cut(s) 323
TseI GCWGC 1 cut(s) 152
TspDTI ATGAA 2 cut(s) 17, 261
TspRI CASTG 1 cut(s) 323
VpaK11BI GGWCC 1 cut(s) 23
XceI RCATGY 2 cut(s) 237, 451
XspI CTAG 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.