MD04G1165700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0000520
Physical Location & Seq
Reverse (-)
25628570 .. 25631307
2738 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1165700.v1.1.491

Sequence Viewer

Length: 363 bp
ATGCTTCGCCGATCCCTATTCGGACCCAGATTCAAGGCCAAGAGCCTCTCCATATCCGGGCAGAGGAAGAATCCAGCCCGACCGCCGAAGCTCCGAGATGTGAAGAAACAAGTAAAGGCTGTTCAAGAGTCTCAGAGTCCAATCCAACTTGAAAAAGAAGAAGCACAGGCTGTTAAACCTTGTGAAGTTTGTGGTGGTGCTGCTGGTTCCCATCCTAGTGTAGTGTGCCCGTATCTTCATGATGTCCCGTGGCATGTTACGAGTGTTGGCGAGGGCTACAAAATAGCATGTTGGTTTTGTTGGAAGGGCCAGTATTGCAGGCATCTAAAGAGGTATGCTATTCGACTTAGTTGTATGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.58

Weight (kDa)

9.68

Isoelectric Point (pI)

57.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 83
AclWI GGATC 1 cut(s) 6
AfiI CCNNNNNNNGG 2 cut(s) 57, 63
AgsI TTSAA 3 cut(s) 34, 125, 152
AluBI AGCT 1 cut(s) 91
AluI AGCT 1 cut(s) 91
Alw26I GTCTC 1 cut(s) 135
AlwI GGATC 1 cut(s) 6
AoxI GGCC 2 cut(s) 36, 307
ApeKI GCWGC 1 cut(s) 200
AspS9I GGNCC 2 cut(s) 23, 307
AsuC2I CCSGG 1 cut(s) 58
AvaII GGWCC 1 cut(s) 23
BaeGI GKGCMC 1 cut(s) 230
BbvI GCAGC 1 cut(s) 187
BccI CCATC 1 cut(s) 219
BcnI CCSGG 1 cut(s) 58
BcoDI GTCTC 1 cut(s) 135
BfaI CTAG 1 cut(s) 216
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
Bme1390I CCNGG 1 cut(s) 58
Bme18I GGWCC 1 cut(s) 23
BmgT120I GGNCC 2 cut(s) 23, 307
BmiI GGNNCC 2 cut(s) 25, 208
BmrFI CCNGG 1 cut(s) 58
BmsI GCATC 1 cut(s) 331
BpuMI CCSGG 1 cut(s) 58
BsaJI CCNNGG 1 cut(s) 248
Bsc4I CCNNNNNNNGG 2 cut(s) 57, 63
Bse1I ACTGG 1 cut(s) 310
BseDI CCNNGG 1 cut(s) 248
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 2 cut(s) 57, 63
BseMII CTCAG 1 cut(s) 146
BseNI ACTGG 1 cut(s) 310
BseSI GKGCMC 1 cut(s) 230
BseXI GCAGC 1 cut(s) 187
Bsh1285I CGRYCG 1 cut(s) 83
BshFI GGCC 2 cut(s) 38, 309
BsiEI CGRYCG 1 cut(s) 83
BsiSI CCGG 1 cut(s) 57
BslFI GGGAC 1 cut(s) 230
BslI CCNNNNNNNGG 2 cut(s) 57, 63
BsmAI GTCTC 1 cut(s) 135
BsmFI GGGAC 1 cut(s) 230
BsnI GGCC 2 cut(s) 38, 309
Bsp1286I GDGCHC 1 cut(s) 230
Bsp143I GATC 1 cut(s) 11
BspACI CCGC 1 cut(s) 83
BspANI GGCC 2 cut(s) 38, 309
BspCNI CTCAG 1 cut(s) 145
BspHI TCATGA 1 cut(s) 238
BspLI GGNNCC 2 cut(s) 25, 208
BspPI GGATC 1 cut(s) 6
BsrI ACTGG 1 cut(s) 310
BssECI CCNNGG 1 cut(s) 248
BssMI GATC 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 320
BstDEI CTNAG 2 cut(s) 132, 347
BstDSI CCRYGG 1 cut(s) 248
BstF5I GGATG 1 cut(s) 211
BstKTI GATC 1 cut(s) 14
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 1 cut(s) 11
BstMCI CGRYCG 1 cut(s) 83
BstMWI GCNNNNNNNGC 1 cut(s) 315
BstNSI RCATGY 2 cut(s) 257, 291
BstSCI CCNGG 1 cut(s) 56
BstSLI GKGCMC 1 cut(s) 230
BstV1I GCAGC 1 cut(s) 187
BsuRI GGCC 2 cut(s) 38, 309
BtgI CCRYGG 1 cut(s) 248
BtsCI GGATG 1 cut(s) 211
Cac8I GCNNGC 1 cut(s) 320
CciI TCATGA 1 cut(s) 238
Cfr13I GGNCC 2 cut(s) 23, 307
CviAII CATG 3 cut(s) 239, 254, 288
CviJI RGCY 8 cut(s) 38, 45, 77, 91, 119, 170, 276, 309
CviKI_1 RGCY 8 cut(s) 38, 45, 77, 91, 119, 170, 276, 309
DdeI CTNAG 2 cut(s) 132, 347
DpnI GATC 1 cut(s) 13
DpnII GATC 1 cut(s) 11
Eco47I GGWCC 1 cut(s) 23
FaeI CATG 3 cut(s) 242, 257, 291
FaiI YATR 6 cut(s) 53, 240, 255, 289, 336, 356
FaqI GGGAC 1 cut(s) 230
FatI CATG 3 cut(s) 238, 253, 287
Fnu4HI GCNGC 1 cut(s) 201
FokI GGATG 1 cut(s) 198
Fsp4HI GCNGC 1 cut(s) 201
FspBI CTAG 1 cut(s) 216
GluI GCNGC 1 cut(s) 201
HaeIII GGCC 2 cut(s) 38, 309
HapII CCGG 1 cut(s) 57
Hin1II CATG 3 cut(s) 242, 257, 291
HinfI GANTC 4 cut(s) 30, 70, 128, 136
HpaII CCGG 1 cut(s) 57
Hpy188I TCNGA 3 cut(s) 23, 95, 135
Hpy188III TCNNGA 2 cut(s) 125, 239
HpyAV CCTTC 1 cut(s) 298
HpyCH4V TGCA 1 cut(s) 318
HpyF10VI GCNNNNNNNGC 1 cut(s) 315
HpyF3I CTNAG 2 cut(s) 132, 347
Hsp92II CATG 3 cut(s) 242, 257, 291
Kzo9I GATC 1 cut(s) 11
LmnI GCTCC 1 cut(s) 96
LpnPI CCDG 7 cut(s) 40, 70, 87, 152, 189, 304, 323
Lsp1109I GCAGC 1 cut(s) 187
LweI GCATC 1 cut(s) 331
MaeI CTAG 1 cut(s) 216
MaeIII GTNAC 1 cut(s) 256
MalI GATC 1 cut(s) 13
MboI GATC 1 cut(s) 11
MboII GAAGA 4 cut(s) 79, 115, 170, 227
MhlI GDGCHC 1 cut(s) 230
MlyI GAGTC 2 cut(s) 137, 145
MmeI TCCRAC 2 cut(s) 169, 281
MnlI CCTC 4 cut(s) 56, 57, 265, 324
MseI TTAA 1 cut(s) 174
MslI CAYNNNNRTG 1 cut(s) 216
MspI CCGG 1 cut(s) 57
MspR9I CCNGG 1 cut(s) 58
MwoI GCNNNNNNNGC 1 cut(s) 315
NciI CCSGG 1 cut(s) 58
NdeII GATC 1 cut(s) 11
NlaIII CATG 3 cut(s) 242, 257, 291
NlaIV GGNNCC 2 cut(s) 25, 208
NspI RCATGY 2 cut(s) 257, 291
PagI TCATGA 1 cut(s) 238
PfeI GAWTC 2 cut(s) 30, 70
PkrI GCNGC 1 cut(s) 202
PleI GAGTC 2 cut(s) 136, 144
PpsI GAGTC 2 cut(s) 136, 144
PspN4I GGNNCC 2 cut(s) 25, 208
PspPI GGNCC 2 cut(s) 23, 307
PsrI GAACNNNNNNTAC 2 cut(s) 105, 137
RseI CAYNNNNRTG 1 cut(s) 216
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 1 cut(s) 11
Sau96I GGNCC 2 cut(s) 23, 307
SchI GAGTC 2 cut(s) 137, 145
ScrFI CCNGG 1 cut(s) 58
SduI GDGCHC 1 cut(s) 230
SetI ASST 3 cut(s) 93, 181, 335
SfaNI GCATC 1 cut(s) 331
SinI GGWCC 1 cut(s) 23
SmiMI CAYNNNNRTG 1 cut(s) 216
SsiI CCGC 1 cut(s) 83
SspMI CTAG 1 cut(s) 216
StyD4I CCNGG 1 cut(s) 56
TaqI TCGA 1 cut(s) 343
TfiI GAWTC 2 cut(s) 30, 70
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TseI GCWGC 1 cut(s) 200
TspDTI ATGAA 1 cut(s) 227
VpaK11BI GGWCC 1 cut(s) 23
XceI RCATGY 2 cut(s) 257, 291
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.