Rh2BG474400

Peptidyl-prolyl cis-trans isomerase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Reverse (-)
66910056 .. 66911987
1932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG474400.1

Sequence Viewer

Length: 513 bp
ATGGACAGCAATTTCTCTGGGGCGATTGCAAAATTGAGAGGAGCTTCGGACGATGAGATCTCGATGGGGCAGCGTGGCGATTTGATGAAGCCCAATAGCTCCGAGGGCATCAAGTCCAAAGAACCAAAGGCTACTGGAGTATCAGACAAAAACAATAAAAAAGTGGCTGCAGTTGCTTCTGTCGTCACCGAAAGAGGAGGATGTCAGATCTGCGGTCATGATCACCAGCACATTCGTTGCCCATACTTGGAGTTGGTTCCACCCGGCGGAACTGTTGGCCCTGACTATGTAGTAGTATGTGGTTATGAGTTAAAGCAGCCTATTCCGGCTTGTTGTTGGTCGTGCGGTGGCCTTTGTTTCTGGACAATAGCAAGACTTGATAAGTTTAAGAAGACCCTGTCTGTGAAGCCCACAGCCCCAGATAGTGAATCTGGAGATGGTGATGGTGAAGATTTATCTGATTGGCAAAAATCTCGGTTCAAATTTGCTCCTGAGACTGGCAAGTATATCTGA

Protein Analysis

170

Amino Acids

18.3

Weight (kDa)

6.81

Isoelectric Point (pI)

29.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 213, 267, 345
AcsI RAATTY 1 cut(s) 482
AfiI CCNNNNNNNGG 3 cut(s) 247, 266, 497
AgsI TTSAA 1 cut(s) 481
AluBI AGCT 2 cut(s) 44, 99
AluI AGCT 2 cut(s) 44, 99
Alw26I GTCTC 1 cut(s) 488
AoxI GGCC 2 cut(s) 277, 349
ApeKI GCWGC 3 cut(s) 70, 167, 316
ApoI RAATTY 1 cut(s) 482
AspS9I GGNCC 1 cut(s) 278
AsuC2I CCSGG 1 cut(s) 264
AsuHPI GGTGA 4 cut(s) 178, 215, 452, 458
BaeI ACNNNNGTAYC 2 cut(s) 123, 156
BbsI GAAGAC 1 cut(s) 398
BbvI GCAGC 3 cut(s) 82, 154, 328
BccI CCATC 3 cut(s) 58, 431, 437
BcgI CGANNNNNNTGC 2 cut(s) 455, 489
BclI TGATCA 1 cut(s) 220
BcnI CCSGG 1 cut(s) 264
BcoDI GTCTC 1 cut(s) 488
BfmI CTRYAG 1 cut(s) 168
BglII AGATCT 2 cut(s) 57, 207
BisI GCNGC 3 cut(s) 71, 168, 317
BlsI GCNGC 3 cut(s) 72, 169, 318
Bme1390I CCNGG 1 cut(s) 264
BmgT120I GGNCC 1 cut(s) 278
BmiI GGNNCC 1 cut(s) 258
BmrFI CCNGG 1 cut(s) 264
BmsI GCATC 1 cut(s) 117
BpiI GAAGAC 1 cut(s) 398
BpmI CTGGAG 2 cut(s) 156, 453
BpuMI CCSGG 1 cut(s) 264
BsaJI CCNNGG 1 cut(s) 102
Bsc4I CCNNNNNNNGG 3 cut(s) 247, 266, 497
Bse1I ACTGG 2 cut(s) 139, 502
BseDI CCNNGG 1 cut(s) 102
BseGI GGATG 1 cut(s) 206
BseLI CCNNNNNNNGG 3 cut(s) 247, 266, 497
BseMII CTCAG 1 cut(s) 483
BseNI ACTGG 2 cut(s) 139, 502
BseRI GAGGAG 2 cut(s) 54, 210
BseXI GCAGC 3 cut(s) 82, 154, 328
BshFI GGCC 2 cut(s) 279, 351
BsiSI CCGG 2 cut(s) 264, 326
BslI CCNNNNNNNGG 3 cut(s) 247, 266, 497
BsmAI GTCTC 1 cut(s) 488
BsnI GGCC 2 cut(s) 279, 351
Bsp143I GATC 3 cut(s) 57, 207, 220
BspACI CCGC 3 cut(s) 213, 267, 345
BspANI GGCC 2 cut(s) 279, 351
BspCNI CTCAG 1 cut(s) 484
BspHI TCATGA 1 cut(s) 217
BspLI GGNNCC 1 cut(s) 258
BspMAI CTGCAG 1 cut(s) 172
BsrI ACTGG 2 cut(s) 139, 502
BssECI CCNNGG 1 cut(s) 102
BssMI GATC 3 cut(s) 57, 207, 220
Bst4CI ACNGT 1 cut(s) 274
BstDEI CTNAG 1 cut(s) 492
BstF5I GGATG 1 cut(s) 206
BstKTI GATC 3 cut(s) 60, 210, 223
BstMAI GTCTC 1 cut(s) 488
BstMBI GATC 3 cut(s) 57, 207, 220
BstMWI GCNNNNNNNGC 2 cut(s) 105, 173
BstSCI CCNGG 1 cut(s) 262
BstSFI CTRYAG 1 cut(s) 168
BstV1I GCAGC 3 cut(s) 82, 154, 328
BstV2I GAAGAC 1 cut(s) 398
BstX2I RGATCY 2 cut(s) 57, 207
BstYI RGATCY 2 cut(s) 57, 207
BsuRI GGCC 2 cut(s) 279, 351
BtsCI GGATG 1 cut(s) 206
CciI TCATGA 1 cut(s) 217
Cfr13I GGNCC 1 cut(s) 278
CviAII CATG 1 cut(s) 218
DdeI CTNAG 1 cut(s) 492
DpnI GATC 3 cut(s) 59, 209, 222
DpnII GATC 3 cut(s) 57, 207, 220
EciI GGCGGA 1 cut(s) 282
FaeI CATG 1 cut(s) 221
FaiI YATR 6 cut(s) 219, 244, 288, 298, 306, 507
FatI CATG 1 cut(s) 217
FbaI TGATCA 1 cut(s) 220
Fnu4HI GCNGC 3 cut(s) 71, 168, 317
FokI GGATG 1 cut(s) 213
Fsp4HI GCNGC 3 cut(s) 71, 168, 317
GluI GCNGC 3 cut(s) 71, 168, 317
GsuI CTGGAG 2 cut(s) 156, 453
HaeIII GGCC 2 cut(s) 279, 351
HapII CCGG 2 cut(s) 264, 326
Hin1II CATG 1 cut(s) 221
HinfI GANTC 1 cut(s) 428
HpaII CCGG 2 cut(s) 264, 326
HphI GGTGA 4 cut(s) 178, 215, 452, 458
Hpy188I TCNGA 6 cut(s) 49, 103, 145, 207, 460, 512
Hpy188III TCNNGA 5 cut(s) 61, 218, 361, 432, 491
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4V TGCA 2 cut(s) 29, 170
HpyF10VI GCNNNNNNNGC 2 cut(s) 105, 173
HpyF3I CTNAG 1 cut(s) 492
Hsp92II CATG 1 cut(s) 221
Ksp22I TGATCA 1 cut(s) 220
Kzo9I GATC 3 cut(s) 57, 207, 220
LmnI GCTCC 3 cut(s) 41, 104, 493
Lsp1109I GCAGC 3 cut(s) 82, 154, 328
LweI GCATC 1 cut(s) 117
MaeIII GTNAC 1 cut(s) 184
MalI GATC 3 cut(s) 59, 209, 222
MboI GATC 3 cut(s) 57, 207, 220
MboII GAAGA 2 cut(s) 403, 461
MflI RGATCY 2 cut(s) 57, 207
MluCI AATT 3 cut(s) 10, 32, 482
MnlI CCTC 4 cut(s) 32, 97, 188, 191
MseI TTAA 2 cut(s) 311, 387
MspI CCGG 2 cut(s) 264, 326
MspR9I CCNGG 1 cut(s) 264
MwoI GCNNNNNNNGC 2 cut(s) 105, 173
NciI CCSGG 1 cut(s) 264
NdeII GATC 3 cut(s) 57, 207, 220
NlaIII CATG 1 cut(s) 221
NlaIV GGNNCC 1 cut(s) 258
NmuCI GTSAC 1 cut(s) 184
PagI TCATGA 1 cut(s) 217
PfeI GAWTC 1 cut(s) 428
PflFI GACNNNGTC 1 cut(s) 397
PkrI GCNGC 3 cut(s) 72, 169, 318
PspN4I GGNNCC 1 cut(s) 258
PspPI GGNCC 1 cut(s) 278
PstI CTGCAG 1 cut(s) 172
PsuI RGATCY 2 cut(s) 57, 207
PsyI GACNNNGTC 1 cut(s) 397
SaqAI TTAA 2 cut(s) 311, 387
SatI GCNGC 3 cut(s) 71, 168, 317
Sau3AI GATC 3 cut(s) 57, 207, 220
Sau96I GGNCC 1 cut(s) 278
ScrFI CCNGG 1 cut(s) 264
SetI ASST 2 cut(s) 46, 101
SfaNI GCATC 1 cut(s) 117
SfcI CTRYAG 1 cut(s) 168
Sse9I AATT 3 cut(s) 10, 32, 482
SsiI CCGC 3 cut(s) 213, 267, 345
StyD4I CCNGG 1 cut(s) 262
TaaI ACNGT 1 cut(s) 274
TaqI TCGA 1 cut(s) 62
TasI AATT 3 cut(s) 10, 32, 482
TfiI GAWTC 1 cut(s) 428
Tru1I TTAA 2 cut(s) 311, 387
Tru9I TTAA 2 cut(s) 311, 387
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 3 cut(s) 70, 167, 316
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 1 cut(s) 101
Tth111I GACNNNGTC 1 cut(s) 397
XapI RAATTY 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.