Rmu_sc0002029.1_g000002

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002029.1
OG0000520
Physical Location & Seq
Reverse (-)
1044 .. 2477
1434 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002029.1_g000002.1.cds

Sequence Viewer

Length: 693 bp
atgatagagaaaccagccggcaaggaggtgggctgcgacccggcgcaactggcgaaacgcggatggctcctcaagggcgacgacctcagagagccgacctgcatacgtatgttgccaatgaaaaacaaggacgacgacgagatctgggttccggcacagtactgtaacaagcctgaagaacctcctagtgatgaagagctaaaacgcctgtctcaccttttggcagaagaaccacacaagctcacaaaggacgaatcaaccatcctatgtcgctttctccctaccccgaagtttgatgaactcttctttaaacgggcaagggagaagaaagccagcaaatccaaagaaccaaaggcttctattccgtttgtctatgaaggaggtggagatagtctgcacaattgcaggatttgtggcaagaaggaccactttgatgtagattgctcttacatgaactttgtccctcagggtgtaaatgttggccccgagtatatggtggtgtgtcggatatgtggtcatagggttagccagcctgttggagattgtcaggcatgtggtacggagggaggacgtgctgttatgaaggtgtgtattttttgtttatgccttggtgaccacttgcctgaggactgcccacgcacaaagagacagaagactcgatccaaatcagaagatgcattgatcataagctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

230

Amino Acids

25.91

Weight (kDa)

7.45

Isoelectric Point (pI)

57.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 107
AccII CGCG 1 cut(s) 60
AciI CCGC 1 cut(s) 60
AclWI GGATC 1 cut(s) 654
AcuI CTGAAG 1 cut(s) 195
AfaI GTAC 2 cut(s) 161, 559
AjiI CACGTC 1 cut(s) 572
AluBI AGCT 3 cut(s) 199, 241, 690
AluI AGCT 3 cut(s) 199, 241, 690
Alw26I GTCTC 2 cut(s) 216, 640
AlwI GGATC 1 cut(s) 654
Ama87I CYCGRG 1 cut(s) 485
AoxI GGCC 1 cut(s) 481
ApeKI GCWGC 1 cut(s) 33
AspLEI GCGC 1 cut(s) 46
AspS9I GGNCC 2 cut(s) 424, 482
AsuC2I CCSGG 1 cut(s) 41
AsuHPI GGTGA 2 cut(s) 206, 623
AvaI CYCGRG 1 cut(s) 485
AvaII GGWCC 1 cut(s) 424
AxyI CCTNAGG 2 cut(s) 465, 624
BbsI GAAGAC 1 cut(s) 659
BbvI GCAGC 1 cut(s) 20
BccI CCATC 2 cut(s) 57, 269
BclI TGATCA 1 cut(s) 681
BcnI CCSGG 1 cut(s) 41
BcoDI GTCTC 2 cut(s) 216, 640
BfaI CTAG 1 cut(s) 186
BfuAI ACCTGC 1 cut(s) 107
BglII AGATCT 1 cut(s) 141
BisI GCNGC 1 cut(s) 34
BlsI GCNGC 1 cut(s) 35
BmcAI AGTACT 1 cut(s) 161
Bme1390I CCNGG 1 cut(s) 41
Bme18I GGWCC 1 cut(s) 424
BmeT110I CYCGRG 1 cut(s) 485
BmgBI CACGTC 1 cut(s) 572
BmgT120I GGNCC 2 cut(s) 424, 482
BmiI GGNNCC 3 cut(s) 68, 150, 484
BmrFI CCNGG 1 cut(s) 41
BmsI GCATC 1 cut(s) 664
BpiI GAAGAC 1 cut(s) 659
BpuEI CTTGAG 1 cut(s) 56
BpuMI CCSGG 1 cut(s) 41
BsaAI YACGTR 1 cut(s) 107
BsaBI GATNNNNATC 1 cut(s) 664
BsaJI CCNNGG 1 cut(s) 607
Bse118I RCCGGY 1 cut(s) 17
Bse1I ACTGG 1 cut(s) 54
Bse21I CCTNAGG 2 cut(s) 465, 624
Bse8I GATNNNNATC 1 cut(s) 664
BseDI CCNNGG 1 cut(s) 607
BseGI GGATG 2 cut(s) 68, 261
BseJI GATNNNNATC 1 cut(s) 664
BseMII CTCAG 3 cut(s) 100, 479, 615
BseNI ACTGG 1 cut(s) 54
BseRI GAGGAG 1 cut(s) 59
BseXI GCAGC 1 cut(s) 20
BsgI GTGCAG 1 cut(s) 380
Bsh1236I CGCG 1 cut(s) 60
BshFI GGCC 1 cut(s) 483
BsiHKCI CYCGRG 1 cut(s) 485
BsiSI CCGG 3 cut(s) 18, 41, 152
BslFI GGGAC 1 cut(s) 446
BsmAI GTCTC 2 cut(s) 216, 640
BsmFI GGGAC 1 cut(s) 446
BsnI GGCC 1 cut(s) 483
BsoBI CYCGRG 1 cut(s) 485
Bsp143I GATC 3 cut(s) 141, 659, 681
BspACI CCGC 1 cut(s) 60
BspANI GGCC 1 cut(s) 483
BspCNI CTCAG 3 cut(s) 99, 478, 616
BspFNI CGCG 1 cut(s) 60
BspLI GGNNCC 3 cut(s) 68, 150, 484
BspMI ACCTGC 1 cut(s) 107
BspPI GGATC 1 cut(s) 654
BspQI GCTCTTC 1 cut(s) 189
BsrFI RCCGGY 1 cut(s) 17
BsrI ACTGG 1 cut(s) 54
BssAI RCCGGY 1 cut(s) 17
BssECI CCNNGG 1 cut(s) 607
BssMI GATC 3 cut(s) 141, 659, 681
BssT1I CCWWGG 1 cut(s) 607
Bst4CI ACNGT 2 cut(s) 159, 164
Bst6I CTCTTC 2 cut(s) 189, 308
BstBAI YACGTR 1 cut(s) 107
BstC8I GCNNGC 3 cut(s) 19, 334, 530
BstDEI CTNAG 3 cut(s) 86, 465, 624
BstEII GGTNACC 1 cut(s) 611
BstF5I GGATG 2 cut(s) 68, 261
BstFNI CGCG 1 cut(s) 60
BstHHI GCGC 1 cut(s) 46
BstKTI GATC 3 cut(s) 144, 662, 684
BstMAI GTCTC 2 cut(s) 216, 640
BstMBI GATC 3 cut(s) 141, 659, 681
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstNSI RCATGY 1 cut(s) 555
BstPI GGTNACC 1 cut(s) 611
BstSCI CCNGG 1 cut(s) 39
BstSNI TACGTA 1 cut(s) 107
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 1 cut(s) 20
BstV2I GAAGAC 1 cut(s) 659
BstX2I RGATCY 1 cut(s) 141
BstXI CCANNNNNNTGG 1 cut(s) 536
BstYI RGATCY 1 cut(s) 141
Bsu36I CCTNAGG 2 cut(s) 465, 624
BsuRI GGCC 1 cut(s) 483
BtrI CACGTC 1 cut(s) 572
BtsCI GGATG 2 cut(s) 68, 261
BveI ACCTGC 1 cut(s) 107
Cac8I GCNNGC 3 cut(s) 19, 334, 530
CfoI GCGC 1 cut(s) 46
Cfr10I RCCGGY 1 cut(s) 17
Cfr13I GGNCC 2 cut(s) 424, 482
Csp6I GTAC 2 cut(s) 160, 558
CviAII CATG 2 cut(s) 451, 552
CviQI GTAC 2 cut(s) 160, 558
DdeI CTNAG 3 cut(s) 86, 465, 624
DpnI GATC 3 cut(s) 143, 661, 683
DpnII GATC 3 cut(s) 141, 659, 681
DraI TTTAAA 1 cut(s) 310
Eam1104I CTCTTC 2 cut(s) 189, 308
EarI CTCTTC 2 cut(s) 189, 308
Eco105I TACGTA 1 cut(s) 107
Eco130I CCWWGG 1 cut(s) 607
Eco47I GGWCC 1 cut(s) 424
Eco57I CTGAAG 1 cut(s) 195
Eco81I CCTNAGG 2 cut(s) 465, 624
Eco88I CYCGRG 1 cut(s) 485
Eco91I GGTNACC 1 cut(s) 611
EcoO65I GGTNACC 1 cut(s) 611
EcoT14I CCWWGG 1 cut(s) 607
EcoT22I ATGCAT 1 cut(s) 679
ErhI CCWWGG 1 cut(s) 607
FaeI CATG 2 cut(s) 454, 555
FalI AAGNNNNNCTT 2 cut(s) 413, 445
FaqI GGGAC 1 cut(s) 446
FatI CATG 2 cut(s) 450, 551
FbaI TGATCA 1 cut(s) 681
Fnu4HI GCNGC 1 cut(s) 34
FokI GGATG 2 cut(s) 75, 248
Fsp4HI GCNGC 1 cut(s) 34
FspBI CTAG 1 cut(s) 186
GlaI GCGC 1 cut(s) 45
GluI GCNGC 1 cut(s) 34
HaeIII GGCC 1 cut(s) 483
HapII CCGG 3 cut(s) 18, 41, 152
HhaI GCGC 1 cut(s) 46
Hin1II CATG 2 cut(s) 454, 555
Hin6I GCGC 1 cut(s) 44
HinP1I GCGC 1 cut(s) 44
HinfI GANTC 2 cut(s) 254, 655
HpaII CCGG 3 cut(s) 18, 41, 152
HphI GGTGA 2 cut(s) 206, 623
Hpy188I TCNGA 3 cut(s) 89, 507, 670
Hpy99I CGWCG 3 cut(s) 83, 137, 140
HpyAV CCTTC 3 cut(s) 371, 415, 577
HpyCH4III ACNGT 2 cut(s) 159, 164
HpyCH4IV ACGT 2 cut(s) 106, 571
HpyCH4V TGCA 4 cut(s) 102, 397, 405, 677
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 3 cut(s) 86, 465, 624
HpySE526I ACGT 2 cut(s) 106, 571
Hsp92II CATG 2 cut(s) 454, 555
HspAI GCGC 1 cut(s) 44
KroI GCCGGC 1 cut(s) 17
KroNI GCCGGC 1 cut(s) 19
Ksp22I TGATCA 1 cut(s) 681
Kzo9I GATC 3 cut(s) 141, 659, 681
LguI GCTCTTC 1 cut(s) 189
LmnI GCTCC 1 cut(s) 72
Lsp1109I GCAGC 1 cut(s) 20
LweI GCATC 1 cut(s) 664
MaeI CTAG 1 cut(s) 186
MaeII ACGT 2 cut(s) 106, 571
MaeIII GTNAC 2 cut(s) 164, 611
MalI GATC 3 cut(s) 143, 661, 683
MboI GATC 3 cut(s) 141, 659, 681
MboII GAAGA 7 cut(s) 188, 206, 239, 295, 337, 664, 683
MfeI CAATTG 1 cut(s) 400
MflI RGATCY 1 cut(s) 141
MluCI AATT 1 cut(s) 400
MlyI GAGTC 1 cut(s) 649
MmeI TCCRAC 2 cut(s) 485, 517
MnlI CCTC 9 cut(s) 19, 80, 95, 192, 374, 474, 556, 560, 619
Mph1103I ATGCAT 1 cut(s) 679
MroNI GCCGGC 1 cut(s) 17
MseI TTAA 1 cut(s) 309
MslI CAYNNNNRTG 2 cut(s) 107, 432
MspI CCGG 3 cut(s) 18, 41, 152
MspR9I CCNGG 1 cut(s) 41
MunI CAATTG 1 cut(s) 400
MvnI CGCG 1 cut(s) 60
MwoI GCNNNNNNNGC 1 cut(s) 50
NaeI GCCGGC 1 cut(s) 19
NciI CCSGG 1 cut(s) 41
NdeII GATC 3 cut(s) 141, 659, 681
NgoMIV GCCGGC 1 cut(s) 17
NlaIII CATG 2 cut(s) 454, 555
NlaIV GGNNCC 3 cut(s) 68, 150, 484
NmuCI GTSAC 1 cut(s) 611
NsiI ATGCAT 1 cut(s) 679
NspI RCATGY 1 cut(s) 555
PciSI GCTCTTC 1 cut(s) 189
PdiI GCCGGC 1 cut(s) 19
PfeI GAWTC 1 cut(s) 254
PkrI GCNGC 1 cut(s) 35
PleI GAGTC 1 cut(s) 649
PpsI GAGTC 1 cut(s) 649
Ppu21I YACGTR 1 cut(s) 107
PspEI GGTNACC 1 cut(s) 611
PspN4I GGNNCC 3 cut(s) 68, 150, 484
PspPI GGNCC 2 cut(s) 424, 482
PsuI RGATCY 1 cut(s) 141
RsaI GTAC 2 cut(s) 161, 559
RsaNI GTAC 2 cut(s) 160, 558
RseI CAYNNNNRTG 2 cut(s) 107, 432
SapI GCTCTTC 1 cut(s) 189
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 1 cut(s) 34
Sau3AI GATC 3 cut(s) 141, 659, 681
Sau96I GGNCC 2 cut(s) 424, 482
ScaI AGTACT 1 cut(s) 161
SchI GAGTC 1 cut(s) 649
ScrFI CCNGG 1 cut(s) 41
SfaNI GCATC 1 cut(s) 664
SinI GGWCC 1 cut(s) 424
SmiMI CAYNNNNRTG 2 cut(s) 107, 432
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
SnaBI TACGTA 1 cut(s) 107
Sse9I AATT 1 cut(s) 400
SsiI CCGC 1 cut(s) 60
SspMI CTAG 1 cut(s) 186
StyD4I CCNGG 1 cut(s) 39
StyI CCWWGG 1 cut(s) 607
TaaI ACNGT 2 cut(s) 159, 164
TaiI ACGT 2 cut(s) 109, 574
TaqI TCGA 1 cut(s) 658
TasI AATT 1 cut(s) 400
TatI WGTACW 1 cut(s) 159
TfiI GAWTC 1 cut(s) 254
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TseFI GTSAC 1 cut(s) 611
TseI GCWGC 1 cut(s) 33
Tsp45I GTSAC 1 cut(s) 611
TspDTI ATGAA 6 cut(s) 134, 207, 312, 390, 467, 596
TspGWI ACGGA 2 cut(s) 354, 575
VpaK11BI GGWCC 1 cut(s) 424
XceI RCATGY 1 cut(s) 555
XspI CTAG 1 cut(s) 186
ZrmI AGTACT 1 cut(s) 161
Zsp2I ATGCAT 1 cut(s) 679
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.