Rorug02G0354200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000520
Physical Location & Seq
Reverse (-)
44552196 .. 44555795
3600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0354200.1

Sequence Viewer

Length: 921 bp
ATGGCCAACATGACACTAACACTCTCTAGTTCCACTCTCTTCCACCTCACGACAAAACCCAGTTCGAGGCTCGCTCTAAGAATCAGAGCCAAAGCCTCCAGAGCCACTGCCATGGCCTCCATATCCACCAAAACCAAGGTGGTGCCTGCAGTCATAGTCGGCGCCGGAAGGGTTGGGAAGGCCTTAAATGACATGGGTAATTGTGATGACTTGCTGGTCAAAAGAGGAGAGCCTGTGCCTCTTGACTTTGAAGGCCCAATAATGGTTTGTACTAGAAATGATGATCTCGAGGCTGTTCTTGAGTCCACTCCAAGGCCCAGATGGAACGATTTGGTTTTTTTCCAGAATGGAATGCTGGAACCATGGCTTGAAAGTAAAGGTCTTGGTGATGCGAACCAAGTGTTAGCATATTTTGCTGTCTCCAAGCTGGGAGAACCTCCAGTTGATGGAATAACCGATACCAATCCTGAAGGACTGACAGCATCATATGGGAAGTGGGCATCTGCAGTAGCTGACAGATTACATGCTGGAGGCCTCACTTGCAAGGTTCTTGACAAGGAAGCATTTCAGAAGCAGATGTTGGAAAAGTTGATATGGATTTCAGCATTTATGCTTGTTGGAGCTCGTCATCCAGGAACAACTGTAGGTGGTGTAGAGAAAGACTACTGCTCTGAGGTTTCCAGCCTCATTGCAGAGCTTGCCACTGCAGCAGCAGCTGAGAAGGGATTGGTATTTGAAGGAGCCATGGAGGATAGATTATGTGCATACTCACGAGCTGTTGCCCACTTTCCTACTGCAGTCAAAGAGTTTAAATGGAGAAATGGTTGGTTCTATTCCCTTTCTGAAAGGGCAATTGCGGAAGGAAAGCCTGATCCATGTCCCCTACATACGGCATGGCTCAAAGAATTGAAAATTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

306

Amino Acids

33.23

Weight (kDa)

6.96

Isoelectric Point (pI)

22.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 215
AccB1I GGYRCC 2 cut(s) 142, 161
AccB7I CCANNNNNTGG 1 cut(s) 446
AciI CCGC 1 cut(s) 857
AclWI GGATC 1 cut(s) 866
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 489
AcyI GRCGYC 1 cut(s) 162
AfaI GTAC 1 cut(s) 271
AfiI CCNNNNNNNGG 5 cut(s) 66, 262, 312, 446, 889
AgsI TTSAA 4 cut(s) 251, 371, 737, 910
AjnI CCWGG 1 cut(s) 631
AjuI GAANNNNNNNTTGG 2 cut(s) 563, 595
AluBI AGCT 6 cut(s) 427, 512, 623, 697, 716, 776
AluI AGCT 6 cut(s) 427, 512, 623, 697, 716, 776
Alw21I GWGCWC 1 cut(s) 625
Alw26I GTCTC 1 cut(s) 424
AlwI GGATC 1 cut(s) 866
AlwNI CAGNNNCTG 2 cut(s) 512, 716
Ama87I CYCGRG 1 cut(s) 287
AoxI GGCC 6 cut(s) 3, 114, 180, 253, 314, 532
ApeKI GCWGC 3 cut(s) 707, 710, 713
Asp700I GAANNNNTTC 1 cut(s) 564
AspLEI GCGC 1 cut(s) 164
AspS9I GGNCC 2 cut(s) 254, 315
AsuHPI GGTGA 1 cut(s) 398
AvaI CYCGRG 1 cut(s) 287
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 142, 161
BanII GRGCYC 1 cut(s) 625
BauI CACGAG 1 cut(s) 771
Bbv12I GWGCWC 1 cut(s) 625
BbvI GCAGC 3 cut(s) 719, 722, 725
BccI CCATC 2 cut(s) 315, 440
BceAI ACGGC 1 cut(s) 906
BciT130I CCWGG 1 cut(s) 633
BcoDI GTCTC 1 cut(s) 424
BfaI CTAG 2 cut(s) 27, 273
BfmI CTRYAG 5 cut(s) 147, 504, 642, 705, 795
BfoI RGCGCY 1 cut(s) 165
BisI GCNGC 3 cut(s) 708, 711, 714
BlsI GCNGC 3 cut(s) 709, 712, 715
Bme1390I CCNGG 1 cut(s) 633
BmeT110I CYCGRG 1 cut(s) 287
BmgT120I GGNCC 2 cut(s) 254, 315
BmiI GGNNCC 4 cut(s) 144, 163, 360, 742
BmrFI CCNGG 1 cut(s) 633
BmrI ACTGGG 1 cut(s) 54
BmsI GCATC 3 cut(s) 379, 491, 509
BmuI ACTGGG 1 cut(s) 54
BplI GAGNNNNNCTC 2 cut(s) 58, 90
BpmI CTGGAG 3 cut(s) 82, 423, 549
BpuEI CTTGAG 1 cut(s) 320
BsaBI GATNNNNATC 1 cut(s) 462
BsaHI GRCGYC 1 cut(s) 162
BsaJI CCNNGG 5 cut(s) 111, 135, 311, 362, 744
BsaXI ACNNNNNCTCC 4 cut(s) 219, 249, 808, 838
Bsc4I CCNNNNNNNGG 5 cut(s) 66, 262, 312, 446, 889
Bse1I ACTGG 2 cut(s) 60, 440
Bse3DI GCAATG 1 cut(s) 687
Bse8I GATNNNNATC 1 cut(s) 462
BseBI CCWGG 1 cut(s) 633
BseDI CCNNGG 5 cut(s) 111, 135, 311, 362, 744
BseGI GGATG 1 cut(s) 628
BseJI GATNNNNATC 1 cut(s) 462
BseLI CCNNNNNNNGG 5 cut(s) 66, 262, 312, 446, 889
BseMI GCAATG 1 cut(s) 687
BseMII CTCAG 2 cut(s) 663, 708
BseNI ACTGG 2 cut(s) 60, 440
BseRI GAGGAG 1 cut(s) 240
BseXI GCAGC 3 cut(s) 719, 722, 725
BseYI CCCAGC 1 cut(s) 427
BshFI GGCC 6 cut(s) 5, 116, 182, 255, 316, 534
BshNI GGYRCC 2 cut(s) 142, 161
BsiHKAI GWGCWC 1 cut(s) 625
BsiHKCI CYCGRG 1 cut(s) 287
BsiSI CCGG 1 cut(s) 165
BslFI GGGAC 1 cut(s) 864
BslI CCNNNNNNNGG 5 cut(s) 66, 262, 312, 446, 889
BsmAI GTCTC 1 cut(s) 424
BsmFI GGGAC 1 cut(s) 864
BsmI GAATGC 1 cut(s) 357
BsnI GGCC 6 cut(s) 5, 116, 182, 255, 316, 534
BsoBI CYCGRG 1 cut(s) 287
Bsp1286I GDGCHC 1 cut(s) 625
Bsp143I GATC 2 cut(s) 283, 871
Bsp19I CCATGG 3 cut(s) 111, 362, 744
BspACI CCGC 1 cut(s) 857
BspANI GGCC 6 cut(s) 5, 116, 182, 255, 316, 534
BspCNI CTCAG 2 cut(s) 664, 709
BspLI GGNNCC 4 cut(s) 144, 163, 360, 742
BspMAI CTGCAG 4 cut(s) 151, 508, 709, 799
BspPI GGATC 1 cut(s) 866
BspT107I GGYRCC 2 cut(s) 142, 161
BsrDI GCAATG 1 cut(s) 687
BsrI ACTGG 2 cut(s) 60, 440
BssECI CCNNGG 5 cut(s) 111, 135, 311, 362, 744
BssMI GATC 2 cut(s) 283, 871
BssNI GRCGYC 1 cut(s) 162
BssSI CACGAG 1 cut(s) 771
BssT1I CCWWGG 5 cut(s) 111, 135, 311, 362, 744
Bst2BI CACGAG 1 cut(s) 771
Bst2UI CCWGG 1 cut(s) 633
Bst4CI ACNGT 1 cut(s) 643
Bst6I CTCTTC 1 cut(s) 44
BstACI GRCGYC 1 cut(s) 162
BstAPI GCANNNNNTGC 2 cut(s) 413, 698
BstC8I GCNNGC 3 cut(s) 72, 147, 699
BstDEI CTNAG 3 cut(s) 77, 672, 717
BstDSI CCRYGG 3 cut(s) 111, 362, 744
BstF5I GGATG 1 cut(s) 628
BstH2I RGCGCY 1 cut(s) 165
BstHHI GCGC 1 cut(s) 164
BstKTI GATC 2 cut(s) 286, 874
BstMAI GTCTC 1 cut(s) 424
BstMBI GATC 2 cut(s) 283, 871
BstMWI GCNNNNNNNGC 6 cut(s) 101, 413, 540, 698, 707, 713
BstNI CCWGG 1 cut(s) 633
BstNSI RCATGY 1 cut(s) 527
BstSCI CCNGG 1 cut(s) 631
BstSFI CTRYAG 5 cut(s) 147, 504, 642, 705, 795
BstV1I GCAGC 3 cut(s) 719, 722, 725
BstXI CCANNNNNNTGG 1 cut(s) 112
BsuRI GGCC 6 cut(s) 5, 116, 182, 255, 316, 534
BtgI CCRYGG 3 cut(s) 111, 362, 744
BtsCI GGATG 1 cut(s) 628
BtsI GCAGTG 2 cut(s) 105, 702
BtsIMutI CAGTG 2 cut(s) 105, 702
Cac8I GCNNGC 3 cut(s) 72, 147, 699
CaiI CAGNNNCTG 2 cut(s) 512, 716
CfoI GCGC 1 cut(s) 164
Cfr13I GGNCC 2 cut(s) 254, 315
Csp6I GTAC 1 cut(s) 270
CviAII CATG 8 cut(s) 10, 112, 193, 363, 524, 745, 876, 894
CviQI GTAC 1 cut(s) 270
DdeI CTNAG 3 cut(s) 77, 672, 717
DinI GGCGCC 1 cut(s) 163
DpnI GATC 2 cut(s) 285, 873
DpnII GATC 2 cut(s) 283, 871
DraI TTTAAA 1 cut(s) 811
DrdI GACNNNNNNGTC 1 cut(s) 215
DseDI GACNNNNNNGTC 1 cut(s) 215
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Ecl136II GAGCTC 1 cut(s) 623
Eco130I CCWWGG 5 cut(s) 111, 135, 311, 362, 744
Eco147I AGGCCT 2 cut(s) 182, 534
Eco24I GRGCYC 1 cut(s) 625
Eco53kI GAGCTC 1 cut(s) 623
Eco57I CTGAAG 1 cut(s) 489
Eco88I CYCGRG 1 cut(s) 287
EcoICRI GAGCTC 1 cut(s) 623
EcoRII CCWGG 1 cut(s) 631
EcoT14I CCWWGG 5 cut(s) 111, 135, 311, 362, 744
EcoT38I GRGCYC 1 cut(s) 625
EgeI GGCGCC 1 cut(s) 163
EheI GGCGCC 1 cut(s) 163
ErhI CCWWGG 5 cut(s) 111, 135, 311, 362, 744
FaeI CATG 8 cut(s) 13, 115, 196, 366, 527, 748, 879, 897
FaqI GGGAC 1 cut(s) 864
FatI CATG 8 cut(s) 9, 111, 192, 362, 523, 744, 875, 893
FauNDI CATATG 1 cut(s) 487
Fnu4HI GCNGC 3 cut(s) 708, 711, 714
FokI GGATG 1 cut(s) 615
FriOI GRGCYC 1 cut(s) 625
Fsp4HI GCNGC 3 cut(s) 708, 711, 714
FspBI CTAG 2 cut(s) 27, 273
GlaI GCGC 1 cut(s) 163
GluI GCNGC 3 cut(s) 708, 711, 714
GsaI CCCAGC 1 cut(s) 431
GsuI CTGGAG 3 cut(s) 82, 423, 549
HaeII RGCGCY 1 cut(s) 165
HaeIII GGCC 6 cut(s) 5, 116, 182, 255, 316, 534
HapII CCGG 1 cut(s) 165
HhaI GCGC 1 cut(s) 164
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 8 cut(s) 13, 115, 196, 366, 527, 748, 879, 897
Hin6I GCGC 1 cut(s) 162
HinP1I GCGC 1 cut(s) 162
HinfI GANTC 2 cut(s) 81, 302
HpaII CCGG 1 cut(s) 165
HphI GGTGA 1 cut(s) 398
Hpy166II GTNNAC 1 cut(s) 306
Hpy188I TCNGA 4 cut(s) 86, 570, 673, 844
Hpy188III TCNNGA 9 cut(s) 49, 99, 242, 287, 299, 343, 467, 551, 771
Hpy8I GTNNAC 1 cut(s) 306
HpyAV CCTTC 7 cut(s) 162, 172, 245, 464, 715, 731, 854
HpyCH4III ACNGT 1 cut(s) 643
HpyCH4V TGCA 7 cut(s) 149, 506, 543, 692, 707, 764, 797
HpyF10VI GCNNNNNNNGC 6 cut(s) 101, 413, 540, 698, 707, 713
HpyF3I CTNAG 3 cut(s) 77, 672, 717
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 8 cut(s) 13, 115, 196, 366, 527, 748, 879, 897
HspAI GCGC 1 cut(s) 162
KasI GGCGCC 1 cut(s) 161
Kzo9I GATC 2 cut(s) 283, 871
LmnI GCTCC 2 cut(s) 620, 740
Lsp1109I GCAGC 3 cut(s) 719, 722, 725
LweI GCATC 3 cut(s) 379, 491, 509
MaeI CTAG 2 cut(s) 27, 273
MalI GATC 2 cut(s) 285, 873
MboI GATC 2 cut(s) 283, 871
MboII GAAGA 1 cut(s) 31
MfeI CAATTG 1 cut(s) 852
MhlI GDGCHC 1 cut(s) 625
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 199, 852, 905, 912
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 162
MlyI GAGTC 1 cut(s) 311
MmeI TCCRAC 2 cut(s) 561, 598
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 564
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 185, 810
MslI CAYNNNNRTG 1 cut(s) 110
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 716
MspI CCGG 1 cut(s) 165
MspR9I CCNGG 1 cut(s) 633
MunI CAATTG 1 cut(s) 852
Mva1269I GAATGC 1 cut(s) 357
MvaI CCWGG 1 cut(s) 633
MwoI GCNNNNNNNGC 6 cut(s) 101, 413, 540, 698, 707, 713
NarI GGCGCC 1 cut(s) 162
NcoI CCATGG 3 cut(s) 111, 362, 744
NdeI CATATG 1 cut(s) 487
NdeII GATC 2 cut(s) 283, 871
NlaIII CATG 8 cut(s) 13, 115, 196, 366, 527, 748, 879, 897
NlaIV GGNNCC 4 cut(s) 144, 163, 360, 742
NspI RCATGY 1 cut(s) 527
PaeR7I CTCGAG 1 cut(s) 287
PceI AGGCCT 2 cut(s) 182, 534
PctI GAATGC 1 cut(s) 357
PdmI GAANNNNTTC 1 cut(s) 564
PfeI GAWTC 1 cut(s) 81
PflMI CCANNNNNTGG 1 cut(s) 446
PfoI TCCNGGA 1 cut(s) 631
PkrI GCNGC 3 cut(s) 709, 712, 715
PleI GAGTC 1 cut(s) 310
PluTI GGCGCC 1 cut(s) 165
PpsI GAGTC 1 cut(s) 310
Psp124BI GAGCTC 1 cut(s) 625
Psp6I CCWGG 1 cut(s) 631
PspFI CCCAGC 1 cut(s) 427
PspGI CCWGG 1 cut(s) 631
PspN4I GGNNCC 4 cut(s) 144, 163, 360, 742
PspPI GGNCC 2 cut(s) 254, 315
PstI CTGCAG 4 cut(s) 151, 508, 709, 799
PstNI CAGNNNCTG 2 cut(s) 512, 716
PvuII CAGCTG 1 cut(s) 716
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
RseI CAYNNNNRTG 1 cut(s) 110
SacI GAGCTC 1 cut(s) 625
SaqAI TTAA 2 cut(s) 185, 810
SatI GCNGC 3 cut(s) 708, 711, 714
Sau3AI GATC 2 cut(s) 283, 871
Sau96I GGNCC 2 cut(s) 254, 315
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 1 cut(s) 633
SduI GDGCHC 1 cut(s) 625
SfaNI GCATC 3 cut(s) 379, 491, 509
SfcI CTRYAG 5 cut(s) 147, 504, 642, 705, 795
SfoI GGCGCC 1 cut(s) 163
Sfr274I CTCGAG 1 cut(s) 287
SlaI CTCGAG 1 cut(s) 287
SmiMI CAYNNNNRTG 1 cut(s) 110
SmlI CTYRAG 2 cut(s) 287, 299
SmoI CTYRAG 2 cut(s) 287, 299
Sse9I AATT 4 cut(s) 199, 852, 905, 912
SseBI AGGCCT 2 cut(s) 182, 534
SsiI CCGC 1 cut(s) 857
SspDI GGCGCC 1 cut(s) 161
SspMI CTAG 2 cut(s) 27, 273
SstI GAGCTC 1 cut(s) 625
StuI AGGCCT 2 cut(s) 182, 534
StyD4I CCNGG 1 cut(s) 631
StyI CCWWGG 5 cut(s) 111, 135, 311, 362, 744
TaaI ACNGT 1 cut(s) 643
TaqI TCGA 2 cut(s) 65, 288
TasI AATT 4 cut(s) 199, 852, 905, 912
TatI WGTACW 1 cut(s) 269
TfiI GAWTC 1 cut(s) 81
Tru1I TTAA 2 cut(s) 185, 810
Tru9I TTAA 2 cut(s) 185, 810
TscAI CASTG 2 cut(s) 112, 709
TseI GCWGC 3 cut(s) 707, 710, 713
TspRI CASTG 2 cut(s) 112, 709
Van91I CCANNNNNTGG 1 cut(s) 446
XceI RCATGY 1 cut(s) 527
XcmI CCANNNNNNNNNTGG 2 cut(s) 136, 318
XhoI CTCGAG 1 cut(s) 287
XmnI GAANNNNTTC 1 cut(s) 564
XspI CTAG 2 cut(s) 27, 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.