MD07G1019500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000520
Physical Location & Seq
Forward (+)
1666400 .. 1667991
1592 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1019500.v1.1.491

Sequence Viewer

Length: 453 bp
ATGAAACTCCGAGATATGAAGAAAACGGGTGTTAAAGACTCTCGGACTCAACTCAAAAAAGAAAAGGTGGTTGAAGAGGCTATGGCTCAACTCCAACTTGACGAGGAGAATACTACTACTCCAAAATCACAACCCCTTGTAAAGTTTGGTGGACCTTTCAAATTCACAGTCCCTTGTGAAGTTTGCGGAGTGGTTGGCCACTATAATGATAGATGCCCCTACATCGAAGTAGGCCTCCCAGACAACGTAACTGAGGCTCCCAAGGGCTATGAAATAGTTAACTTACGTGGTGGGAAGCGTGCTGTTAGGATCATGTTTTGTGGTTGTTGTAAAATGCTCCGGGACCACAAGATCAAGGACTGCCCGAATAAGAGCAAGATGACTGCAATAATGAACTCTATTCTGAAGGCCGCTCGCCCTCCTGCAGGTCCTCTGTCCTCAGGATCTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

16.58

Weight (kDa)

9.32

Isoelectric Point (pI)

49.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 416
AccBSI CCGCTC 1 cut(s) 413
AciI CCGC 2 cut(s) 186, 411
AclWI GGATC 2 cut(s) 317, 451
AcoI YGGCCR 1 cut(s) 196
AcsI RAATTY 1 cut(s) 161
AcuI CTGAAG 1 cut(s) 425
AfiI CCNNNNNNNGG 1 cut(s) 425
AgsI TTSAA 2 cut(s) 74, 160
AlwI GGATC 2 cut(s) 317, 451
AoxI GGCC 3 cut(s) 196, 232, 408
ApoI RAATTY 1 cut(s) 161
ArsI GACNNNNNNTTYG 2 cut(s) 153, 185
AspS9I GGNCC 3 cut(s) 152, 343, 428
AsuC2I CCSGG 1 cut(s) 341
AvaII GGWCC 3 cut(s) 152, 343, 428
AxyI CCTNAGG 1 cut(s) 439
BalI TGGCCA 1 cut(s) 198
BcnI CCSGG 1 cut(s) 341
BfmI CTRYAG 1 cut(s) 423
BfuAI ACCTGC 1 cut(s) 416
BisI GCNGC 1 cut(s) 411
BlsI GCNGC 1 cut(s) 412
Bme1390I CCNGG 1 cut(s) 341
Bme18I GGWCC 3 cut(s) 152, 343, 428
BmgT120I GGNCC 3 cut(s) 152, 343, 428
BmiI GGNNCC 2 cut(s) 258, 344
BmrFI CCNGG 1 cut(s) 341
BmsI GCATC 1 cut(s) 203
BpuMI CCSGG 1 cut(s) 341
BsaAI YACGTR 1 cut(s) 287
BsaJI CCNNGG 1 cut(s) 261
BsaXI ACNNNNNCTCC 4 cut(s) 103, 133, 241, 271
Bsc4I CCNNNNNNNGG 1 cut(s) 425
Bse21I CCTNAGG 1 cut(s) 439
BseDI CCNNGG 1 cut(s) 261
BseLI CCNNNNNNNGG 1 cut(s) 425
BseMII CTCAG 2 cut(s) 243, 453
BseRI GAGGAG 1 cut(s) 119
BshFI GGCC 3 cut(s) 198, 234, 410
BsiSI CCGG 1 cut(s) 340
BslFI GGGAC 2 cut(s) 155, 356
BslI CCNNNNNNNGG 1 cut(s) 425
BsmFI GGGAC 2 cut(s) 155, 356
BsnI GGCC 3 cut(s) 198, 234, 410
Bsp143I GATC 3 cut(s) 309, 351, 443
BspACI CCGC 2 cut(s) 186, 411
BspANI GGCC 3 cut(s) 198, 234, 410
BspCNI CTCAG 2 cut(s) 244, 452
BspLI GGNNCC 2 cut(s) 258, 344
BspMAI CTGCAG 1 cut(s) 427
BspMI ACCTGC 1 cut(s) 416
BspPI GGATC 2 cut(s) 317, 451
BsrBI CCGCTC 1 cut(s) 413
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 3 cut(s) 309, 351, 443
BssT1I CCWWGG 1 cut(s) 261
Bst4CI ACNGT 1 cut(s) 169
Bst6I CTCTTC 1 cut(s) 69
BstBAI YACGTR 1 cut(s) 287
BstC8I GCNNGC 2 cut(s) 300, 415
BstDEI CTNAG 2 cut(s) 252, 439
BstENI CCTNNNNNAGG 1 cut(s) 423
BstKTI GATC 3 cut(s) 312, 354, 446
BstMBI GATC 3 cut(s) 309, 351, 443
BstSCI CCNGG 1 cut(s) 339
BstSFI CTRYAG 1 cut(s) 423
BstX2I RGATCY 1 cut(s) 443
BstYI RGATCY 1 cut(s) 443
Bsu36I CCTNAGG 1 cut(s) 439
BsuRI GGCC 3 cut(s) 198, 234, 410
BveI ACCTGC 1 cut(s) 416
Cac8I GCNNGC 2 cut(s) 300, 415
Cfr13I GGNCC 3 cut(s) 152, 343, 428
CviAII CATG 1 cut(s) 313
CviJI RGCY 7 cut(s) 80, 86, 198, 234, 257, 267, 410
CviKI_1 RGCY 7 cut(s) 80, 86, 198, 234, 257, 267, 410
DdeI CTNAG 2 cut(s) 252, 439
DpnI GATC 3 cut(s) 311, 353, 445
DpnII GATC 3 cut(s) 309, 351, 443
EaeI YGGCCR 1 cut(s) 196
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 261
Eco147I AGGCCT 1 cut(s) 234
Eco47I GGWCC 3 cut(s) 152, 343, 428
Eco57I CTGAAG 1 cut(s) 425
Eco81I CCTNAGG 1 cut(s) 439
EcoNI CCTNNNNNAGG 1 cut(s) 423
EcoO109I RGGNCCY 1 cut(s) 428
EcoT14I CCWWGG 1 cut(s) 261
ErhI CCWWGG 1 cut(s) 261
FaeI CATG 1 cut(s) 316
FaiI YATR 5 cut(s) 17, 83, 204, 270, 314
FaqI GGGAC 2 cut(s) 155, 356
FatI CATG 1 cut(s) 312
Fnu4HI GCNGC 1 cut(s) 411
Fsp4HI GCNGC 1 cut(s) 411
GluI GCNGC 1 cut(s) 411
HaeIII GGCC 3 cut(s) 198, 234, 410
HapII CCGG 1 cut(s) 340
Hin1II CATG 1 cut(s) 316
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HinfI GANTC 2 cut(s) 38, 46
HpaI GTTAAC 1 cut(s) 280
HpaII CCGG 1 cut(s) 340
Hpy166II GTNNAC 2 cut(s) 152, 280
Hpy188I TCNGA 3 cut(s) 11, 45, 405
Hpy188III TCNNGA 1 cut(s) 441
Hpy8I GTNNAC 2 cut(s) 152, 280
HpyAV CCTTC 1 cut(s) 400
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4IV ACGT 2 cut(s) 246, 286
HpyCH4V TGCA 2 cut(s) 386, 425
HpyF3I CTNAG 2 cut(s) 252, 439
HpySE526I ACGT 2 cut(s) 246, 286
Hsp92II CATG 1 cut(s) 316
KspAI GTTAAC 1 cut(s) 280
Kzo9I GATC 3 cut(s) 309, 351, 443
LmnI GCTCC 2 cut(s) 262, 342
LpnPI CCDG 5 cut(s) 252, 353, 411, 426, 435
LweI GCATC 1 cut(s) 203
MaeII ACGT 2 cut(s) 246, 286
MaeIII GTNAC 1 cut(s) 247
MalI GATC 3 cut(s) 311, 353, 445
MbiI CCGCTC 1 cut(s) 413
MboI GATC 3 cut(s) 309, 351, 443
MboII GAAGA 2 cut(s) 31, 86
MflI RGATCY 1 cut(s) 443
MlsI TGGCCA 1 cut(s) 198
MluCI AATT 1 cut(s) 161
MluNI TGGCCA 1 cut(s) 198
MlyI GAGTC 2 cut(s) 32, 40
MmeI TCCRAC 1 cut(s) 118
MnlI CCTC 7 cut(s) 70, 97, 245, 247, 429, 441, 448
Mox20I TGGCCA 1 cut(s) 198
MscI TGGCCA 1 cut(s) 198
MseI TTAA 2 cut(s) 33, 279
MslI CAYNNNNRTG 1 cut(s) 204
Msp20I TGGCCA 1 cut(s) 198
MspI CCGG 1 cut(s) 340
MspR9I CCNGG 1 cut(s) 341
NciI CCSGG 1 cut(s) 341
NdeII GATC 3 cut(s) 309, 351, 443
NlaIII CATG 1 cut(s) 316
NlaIV GGNNCC 2 cut(s) 258, 344
PceI AGGCCT 1 cut(s) 234
PfoI TCCNGGA 1 cut(s) 339
PkrI GCNGC 1 cut(s) 412
PleI GAGTC 2 cut(s) 32, 40
PpsI GAGTC 2 cut(s) 32, 40
Ppu21I YACGTR 1 cut(s) 287
PpuMI RGGWCCY 1 cut(s) 428
Psp5II RGGWCCY 1 cut(s) 428
PspN4I GGNNCC 2 cut(s) 258, 344
PspPI GGNCC 3 cut(s) 152, 343, 428
PspPPI RGGWCCY 1 cut(s) 428
PstI CTGCAG 1 cut(s) 427
PsuI RGATCY 1 cut(s) 443
RseI CAYNNNNRTG 1 cut(s) 204
SaqAI TTAA 2 cut(s) 33, 279
SatI GCNGC 1 cut(s) 411
Sau3AI GATC 3 cut(s) 309, 351, 443
Sau96I GGNCC 3 cut(s) 152, 343, 428
SbfI CCTGCAGG 1 cut(s) 427
SchI GAGTC 2 cut(s) 32, 40
ScrFI CCNGG 1 cut(s) 341
SdaI CCTGCAGG 1 cut(s) 427
SetI ASST 5 cut(s) 69, 157, 249, 289, 430
SfaNI GCATC 1 cut(s) 203
SfcI CTRYAG 1 cut(s) 423
SinI GGWCC 3 cut(s) 152, 343, 428
SmiMI CAYNNNNRTG 1 cut(s) 204
Sse8387I CCTGCAGG 1 cut(s) 427
Sse9I AATT 1 cut(s) 161
SseBI AGGCCT 1 cut(s) 234
SsiI CCGC 2 cut(s) 186, 411
StuI AGGCCT 1 cut(s) 234
StyD4I CCNGG 1 cut(s) 339
StyI CCWWGG 1 cut(s) 261
TaaI ACNGT 1 cut(s) 169
TaiI ACGT 2 cut(s) 249, 289
TaqI TCGA 1 cut(s) 225
TasI AATT 1 cut(s) 161
TauI GCSGC 1 cut(s) 413
Tru1I TTAA 2 cut(s) 33, 279
Tru9I TTAA 2 cut(s) 33, 279
TspDTI ATGAA 4 cut(s) 17, 32, 285, 407
VpaK11BI GGWCC 3 cut(s) 152, 343, 428
XagI CCTNNNNNAGG 1 cut(s) 423
XapI RAATTY 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.