Rroxscaffold_2G00105790

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000520
Physical Location & Seq
Reverse (-)
29284413 .. 29285390
978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00105790.1

Sequence Viewer

Length: 522 bp
ATGGACAGCAATTTCTCAGGGTCGATTGCAAAATTGAGAGGAGCGTTGGACGATGAGATCTCGATGGGGCAGCGCGGGGATTTGATGAAGCCCGATAGCTCCGAGGGCATCAAGTCCAAAGAACCAAAGGCTACTGGAGTATCAGACAAAAACAATAGAAAAGTGGCTGCAGTTTCTTCTTCTACTTCTGGCGTCACCGAAAGAGGAGGATGTCAGATCTGCGGCCATGATCACCAGCACATTCGTTGCCCATACTTGGAGTTGGTTCCACCTGGCGGAACTGTTGGCCCTGACTATCTAGTAGTATGTGGCGAATGTGGCTATGAGTTAAAGCAGCCTATTCCGGCTTGTTGTTGGTCGTGCGGTTATTGGGGAGGACGTGCGGTGGAGGCGTCTACCTTTGATTATAGCTTTCGTTACTACCTAGATGAATTTTATATAGAAGAACCAGTTACGGCAGAGTACATGGACCCAGACAAGTACACAGAACAAAAACCTGTTATGGCACAGTCCTCATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

18.94

Weight (kDa)

4.87

Isoelectric Point (pI)

46.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 395
AccII CGCG 1 cut(s) 75
AciI CCGC 5 cut(s) 75, 222, 276, 363, 383
AcoI YGGCCR 1 cut(s) 223
AcsI RAATTY 1 cut(s) 431
AcyI GRCGYC 2 cut(s) 192, 392
AfaI GTAC 2 cut(s) 464, 482
AfiI CCNNNNNNNGG 2 cut(s) 256, 275
AjiI CACGTC 1 cut(s) 380
AjnI CCWGG 1 cut(s) 271
AluBI AGCT 2 cut(s) 99, 411
AluI AGCT 2 cut(s) 99, 411
AoxI GGCC 2 cut(s) 223, 286
ApeKI GCWGC 3 cut(s) 70, 167, 334
ApoI RAATTY 1 cut(s) 431
AspLEI GCGC 1 cut(s) 75
AspS9I GGNCC 2 cut(s) 287, 469
AsuHPI GGTGA 2 cut(s) 187, 224
AvaII GGWCC 1 cut(s) 469
BaeI ACNNNNGTAYC 2 cut(s) 123, 156
BbvI GCAGC 3 cut(s) 82, 154, 346
BccI CCATC 1 cut(s) 58
BceAI ACGGC 1 cut(s) 471
BciT130I CCWGG 1 cut(s) 273
BclI TGATCA 1 cut(s) 229
BfaI CTAG 2 cut(s) 299, 425
BfmI CTRYAG 1 cut(s) 168
BglII AGATCT 2 cut(s) 57, 216
BisI GCNGC 4 cut(s) 71, 168, 223, 335
BlsI GCNGC 4 cut(s) 72, 169, 224, 336
Bme1390I CCNGG 1 cut(s) 273
Bme18I GGWCC 1 cut(s) 469
BmgBI CACGTC 1 cut(s) 380
BmgT120I GGNCC 2 cut(s) 287, 469
BmiI GGNNCC 2 cut(s) 267, 471
BmrFI CCNGG 1 cut(s) 273
BmsI GCATC 1 cut(s) 117
BpmI CTGGAG 1 cut(s) 156
BsaHI GRCGYC 2 cut(s) 192, 392
BsaJI CCNNGG 1 cut(s) 102
Bsc4I CCNNNNNNNGG 2 cut(s) 256, 275
Bse1I ACTGG 2 cut(s) 139, 449
BseBI CCWGG 1 cut(s) 273
BseDI CCNNGG 1 cut(s) 102
BseGI GGATG 1 cut(s) 215
BseLI CCNNNNNNNGG 2 cut(s) 256, 275
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 2 cut(s) 139, 449
BseRI GAGGAG 2 cut(s) 54, 219
BseXI GCAGC 3 cut(s) 82, 154, 346
Bsh1236I CGCG 1 cut(s) 75
BshFI GGCC 2 cut(s) 225, 288
BsiSI CCGG 1 cut(s) 344
BslI CCNNNNNNNGG 2 cut(s) 256, 275
BsnI GGCC 2 cut(s) 225, 288
Bsp143I GATC 3 cut(s) 57, 216, 229
BspACI CCGC 5 cut(s) 75, 222, 276, 363, 383
BspANI GGCC 2 cut(s) 225, 288
BspCNI CTCAG 1 cut(s) 29
BspFNI CGCG 1 cut(s) 75
BspLI GGNNCC 2 cut(s) 267, 471
BspMAI CTGCAG 1 cut(s) 172
BsrI ACTGG 2 cut(s) 139, 449
BssECI CCNNGG 1 cut(s) 102
BssMI GATC 3 cut(s) 57, 216, 229
BssNI GRCGYC 2 cut(s) 192, 392
Bst2UI CCWGG 1 cut(s) 273
Bst4CI ACNGT 2 cut(s) 283, 510
BstACI GRCGYC 2 cut(s) 192, 392
BstDEI CTNAG 1 cut(s) 16
BstF5I GGATG 1 cut(s) 215
BstFNI CGCG 1 cut(s) 75
BstHHI GCGC 1 cut(s) 75
BstKTI GATC 3 cut(s) 60, 219, 232
BstMBI GATC 3 cut(s) 57, 216, 229
BstMWI GCNNNNNNNGC 3 cut(s) 105, 318, 389
BstNI CCWGG 1 cut(s) 273
BstSCI CCNGG 1 cut(s) 271
BstSFI CTRYAG 1 cut(s) 168
BstUI CGCG 1 cut(s) 75
BstV1I GCAGC 3 cut(s) 82, 154, 346
BstX2I RGATCY 2 cut(s) 57, 216
BstYI RGATCY 2 cut(s) 57, 216
BsuRI GGCC 2 cut(s) 225, 288
BtrI CACGTC 1 cut(s) 380
BtsCI GGATG 1 cut(s) 215
CfoI GCGC 1 cut(s) 75
Cfr13I GGNCC 2 cut(s) 287, 469
CseI GACGC 2 cut(s) 181, 381
Csp6I GTAC 2 cut(s) 463, 481
CviAII CATG 2 cut(s) 227, 466
CviQI GTAC 2 cut(s) 463, 481
DdeI CTNAG 1 cut(s) 16
DpnI GATC 3 cut(s) 59, 218, 231
DpnII GATC 3 cut(s) 57, 216, 229
EaeI YGGCCR 1 cut(s) 223
EciI GGCGGA 1 cut(s) 291
Eco47I GGWCC 1 cut(s) 469
EcoRII CCWGG 1 cut(s) 271
FaeI CATG 2 cut(s) 230, 469
FaiI YATR 9 cut(s) 228, 253, 307, 324, 408, 438, 440, 467, 503
FatI CATG 2 cut(s) 226, 465
FauI CCCGC 1 cut(s) 68
FbaI TGATCA 1 cut(s) 229
FblI GTMKAC 1 cut(s) 395
Fnu4HI GCNGC 4 cut(s) 71, 168, 223, 335
FokI GGATG 1 cut(s) 222
Fsp4HI GCNGC 4 cut(s) 71, 168, 223, 335
FspBI CTAG 2 cut(s) 299, 425
GlaI GCGC 1 cut(s) 74
GluI GCNGC 4 cut(s) 71, 168, 223, 335
GsuI CTGGAG 1 cut(s) 156
HaeIII GGCC 2 cut(s) 225, 288
HapII CCGG 1 cut(s) 344
HgaI GACGC 2 cut(s) 181, 381
HhaI GCGC 1 cut(s) 75
Hin1I GRCGYC 2 cut(s) 192, 392
Hin1II CATG 2 cut(s) 230, 469
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HpaII CCGG 1 cut(s) 344
HphI GGTGA 2 cut(s) 187, 224
Hpy166II GTNNAC 2 cut(s) 396, 483
Hpy188I TCNGA 3 cut(s) 103, 145, 216
Hpy188III TCNNGA 1 cut(s) 61
Hpy8I GTNNAC 2 cut(s) 396, 483
HpyCH4III ACNGT 2 cut(s) 283, 510
HpyCH4IV ACGT 1 cut(s) 379
HpyCH4V TGCA 2 cut(s) 29, 170
HpyF10VI GCNNNNNNNGC 3 cut(s) 105, 318, 389
HpyF3I CTNAG 1 cut(s) 16
HpySE526I ACGT 1 cut(s) 379
Hsp92I GRCGYC 2 cut(s) 192, 392
Hsp92II CATG 2 cut(s) 230, 469
HspAI GCGC 1 cut(s) 73
Ksp22I TGATCA 1 cut(s) 229
Kzo9I GATC 3 cut(s) 57, 216, 229
LmnI GCTCC 2 cut(s) 41, 104
Lsp1109I GCAGC 3 cut(s) 82, 154, 346
LweI GCATC 1 cut(s) 117
MaeI CTAG 2 cut(s) 299, 425
MaeII ACGT 1 cut(s) 379
MaeIII GTNAC 3 cut(s) 193, 416, 451
MalI GATC 3 cut(s) 59, 218, 231
MboI GATC 3 cut(s) 57, 216, 229
MboII GAAGA 3 cut(s) 168, 171, 455
MflI RGATCY 2 cut(s) 57, 216
MluCI AATT 3 cut(s) 10, 32, 431
MmeI TCCRAC 1 cut(s) 27
MnlI CCTC 6 cut(s) 32, 97, 197, 200, 368, 382
MseI TTAA 1 cut(s) 329
MspI CCGG 1 cut(s) 344
MspR9I CCNGG 1 cut(s) 273
MvaI CCWGG 1 cut(s) 273
MvnI CGCG 1 cut(s) 75
MwoI GCNNNNNNNGC 3 cut(s) 105, 318, 389
NdeII GATC 3 cut(s) 57, 216, 229
NlaIII CATG 2 cut(s) 230, 469
NlaIV GGNNCC 2 cut(s) 267, 471
NmuCI GTSAC 1 cut(s) 193
PkrI GCNGC 4 cut(s) 72, 169, 224, 336
Psp6I CCWGG 1 cut(s) 271
PspGI CCWGG 1 cut(s) 271
PspN4I GGNNCC 2 cut(s) 267, 471
PspPI GGNCC 2 cut(s) 287, 469
PstI CTGCAG 1 cut(s) 172
PsuI RGATCY 2 cut(s) 57, 216
RsaI GTAC 2 cut(s) 464, 482
RsaNI GTAC 2 cut(s) 463, 481
SaqAI TTAA 1 cut(s) 329
SatI GCNGC 4 cut(s) 71, 168, 223, 335
Sau3AI GATC 3 cut(s) 57, 216, 229
Sau96I GGNCC 2 cut(s) 287, 469
ScrFI CCNGG 1 cut(s) 273
SetI ASST 7 cut(s) 101, 274, 382, 401, 413, 426, 499
SfaNI GCATC 1 cut(s) 117
SfcI CTRYAG 1 cut(s) 168
SinI GGWCC 1 cut(s) 469
Sse9I AATT 3 cut(s) 10, 32, 431
SsiI CCGC 5 cut(s) 75, 222, 276, 363, 383
SspMI CTAG 2 cut(s) 299, 425
StyD4I CCNGG 1 cut(s) 271
TaaI ACNGT 2 cut(s) 283, 510
TaiI ACGT 1 cut(s) 382
TaqI TCGA 2 cut(s) 23, 62
TasI AATT 3 cut(s) 10, 32, 431
TatI WGTACW 2 cut(s) 462, 480
TauI GCSGC 1 cut(s) 225
Tru1I TTAA 1 cut(s) 329
Tru9I TTAA 1 cut(s) 329
TseFI GTSAC 1 cut(s) 193
TseI GCWGC 3 cut(s) 70, 167, 334
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 2 cut(s) 101, 444
VpaK11BI GGWCC 1 cut(s) 469
XapI RAATTY 1 cut(s) 431
XmiI GTMKAC 1 cut(s) 395
XspI CTAG 2 cut(s) 299, 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.