RchiOBHm_Chr3g0492121

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000520
Physical Location & Seq
Forward (+)
38866149 .. 38866593
445 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45501

Sequence Viewer

Length: 411 bp
ATGGATGCTTCTGGAATCACAGTGAGACCAGCAGTGGGCAAGGAGAAGGAGAAGTACTCTGAAGAAGATCTAAAGGCTGCCGCCAGAGTCATCAAAAAAGAAGGATGGCAGATTTGTGGTGATGATCACCAACACATTATTAGTTGCCCGTACTTGGAGTGTGTTCCACCTGGTGCAACTGTTGGCCCTGACTATCTAGTAATATGTGACTTGTGTGGTTATGAGTTATTGCAGCCTACAGCGGCTCACTGTTGGATGTGCGGTAAGTGGGGAGTACGTGCGGTGGAGGCGTCTACCTTTGATGAGAGCTATCGTAACCACCTAGAAGAAGATTACATAGCAGAACCAATTGTGTATGCAGGGTACATAGACCTAGACAAAACTAAAAGTCAGACTCTGAAGATCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.17

Weight (kDa)

4.91

Isoelectric Point (pI)

39.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 293
AciI CCGC 4 cut(s) 81, 242, 261, 281
AcuI CTGAAG 1 cut(s) 81
AcyI GRCGYC 1 cut(s) 290
AdeI CACNNNGTG 1 cut(s) 173
AfaI GTAC 4 cut(s) 56, 152, 276, 365
AfiI CCNNNNNNNGG 2 cut(s) 35, 154
AjnI CCWGG 1 cut(s) 169
AluBI AGCT 1 cut(s) 309
AluI AGCT 1 cut(s) 309
Alw26I GTCTC 1 cut(s) 19
AlwNI CAGNNNCTG 1 cut(s) 397
AoxI GGCC 1 cut(s) 184
ApeKI GCWGC 2 cut(s) 77, 232
AspS9I GGNCC 1 cut(s) 185
AsuHPI GGTGA 2 cut(s) 119, 131
BarI GAAGNNNNNNTAC 2 cut(s) 38, 70
BbvI GCAGC 2 cut(s) 64, 244
BccI CCATC 1 cut(s) 99
BciT130I CCWGG 1 cut(s) 171
BclI TGATCA 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 19
BfaI CTAG 3 cut(s) 197, 323, 374
BfmI CTRYAG 1 cut(s) 237
BglII AGATCT 1 cut(s) 67
BisI GCNGC 4 cut(s) 78, 81, 233, 243
BlsI GCNGC 4 cut(s) 79, 82, 234, 244
BmcAI AGTACT 1 cut(s) 56
Bme1390I CCNGG 1 cut(s) 171
BmgT120I GGNCC 1 cut(s) 185
BmrFI CCNGG 1 cut(s) 171
BplI GAGNNNNNCTC 2 cut(s) 41, 73
BsaAI YACGTR 1 cut(s) 278
BsaHI GRCGYC 1 cut(s) 290
BsaI GGTCTC 1 cut(s) 19
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 154
BseBI CCWGG 1 cut(s) 171
BseGI GGATG 3 cut(s) 10, 110, 261
BseLI CCNNNNNNNGG 2 cut(s) 35, 154
BseXI GCAGC 2 cut(s) 64, 244
BshFI GGCC 1 cut(s) 186
BslI CCNNNNNNNGG 2 cut(s) 35, 154
BsmAI GTCTC 1 cut(s) 19
BsnI GGCC 1 cut(s) 186
Bso31I GGTCTC 1 cut(s) 19
Bsp143I GATC 3 cut(s) 67, 124, 402
BspACI CCGC 4 cut(s) 81, 242, 261, 281
BspANI GGCC 1 cut(s) 186
BspTNI GGTCTC 1 cut(s) 19
BssMI GATC 3 cut(s) 67, 124, 402
BssNI GRCGYC 1 cut(s) 290
Bst2UI CCWGG 1 cut(s) 171
Bst4CI ACNGT 3 cut(s) 22, 181, 251
BstACI GRCGYC 1 cut(s) 290
BstBAI YACGTR 1 cut(s) 278
BstF5I GGATG 3 cut(s) 10, 110, 261
BstKTI GATC 3 cut(s) 70, 127, 405
BstMAI GTCTC 1 cut(s) 19
BstMBI GATC 3 cut(s) 67, 124, 402
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstNI CCWGG 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 169
BstSFI CTRYAG 1 cut(s) 237
BstV1I GCAGC 2 cut(s) 64, 244
BstX2I RGATCY 1 cut(s) 67
BstYI RGATCY 1 cut(s) 67
BsuRI GGCC 1 cut(s) 186
BtsCI GGATG 3 cut(s) 10, 110, 261
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 3 cut(s) 27, 39, 247
CaiI CAGNNNCTG 1 cut(s) 397
Cfr13I GGNCC 1 cut(s) 185
CseI GACGC 1 cut(s) 279
CsiI ACCWGGT 1 cut(s) 169
Csp6I GTAC 4 cut(s) 55, 151, 275, 364
CviJI RGCY 5 cut(s) 77, 186, 235, 245, 309
CviKI_1 RGCY 5 cut(s) 77, 186, 235, 245, 309
CviQI GTAC 4 cut(s) 55, 151, 275, 364
DpnI GATC 3 cut(s) 69, 126, 404
DpnII GATC 3 cut(s) 67, 124, 402
DraIII CACNNNGTG 1 cut(s) 173
Eco31I GGTCTC 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 81
EcoRII CCWGG 1 cut(s) 169
FaiI YATR 6 cut(s) 205, 222, 338, 357, 368, 409
FbaI TGATCA 1 cut(s) 124
FblI GTMKAC 1 cut(s) 293
Fnu4HI GCNGC 4 cut(s) 78, 81, 233, 243
FokI GGATG 3 cut(s) 17, 117, 268
Fsp4HI GCNGC 4 cut(s) 78, 81, 233, 243
FspBI CTAG 3 cut(s) 197, 323, 374
GluI GCNGC 4 cut(s) 78, 81, 233, 243
HaeIII GGCC 1 cut(s) 186
HgaI GACGC 1 cut(s) 279
Hin1I GRCGYC 1 cut(s) 290
HinfI GANTC 3 cut(s) 15, 87, 394
HphI GGTGA 2 cut(s) 119, 131
Hpy166II GTNNAC 1 cut(s) 294
Hpy188I TCNGA 3 cut(s) 61, 393, 399
Hpy188III TCNNGA 1 cut(s) 12
Hpy8I GTNNAC 1 cut(s) 294
HpyAV CCTTC 2 cut(s) 40, 95
HpyCH4III ACNGT 3 cut(s) 22, 181, 251
HpyCH4IV ACGT 1 cut(s) 277
HpyCH4V TGCA 3 cut(s) 176, 232, 359
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
HpySE526I ACGT 1 cut(s) 277
Hsp92I GRCGYC 1 cut(s) 290
Ksp22I TGATCA 1 cut(s) 124
Kzo9I GATC 3 cut(s) 67, 124, 402
LpnPI CCDG 6 cut(s) 42, 97, 156, 183, 201, 345
Lsp1109I GCAGC 2 cut(s) 64, 244
MabI ACCWGGT 1 cut(s) 169
MaeI CTAG 3 cut(s) 197, 323, 374
MaeII ACGT 1 cut(s) 277
MaeIII GTNAC 2 cut(s) 206, 314
MalI GATC 3 cut(s) 69, 126, 404
MboI GATC 3 cut(s) 67, 124, 402
MboII GAAGA 4 cut(s) 74, 77, 338, 341
MfeI CAATTG 1 cut(s) 348
MflI RGATCY 1 cut(s) 67
MluCI AATT 1 cut(s) 348
MlyI GAGTC 2 cut(s) 96, 388
MmeI TCCRAC 1 cut(s) 233
MnlI CCTC 1 cut(s) 280
MspA1I CMGCKG 1 cut(s) 242
MspR9I CCNGG 1 cut(s) 171
MunI CAATTG 1 cut(s) 348
MvaI CCWGG 1 cut(s) 171
MwoI GCNNNNNNNGC 1 cut(s) 287
NdeII GATC 3 cut(s) 67, 124, 402
NmuCI GTSAC 1 cut(s) 206
PfeI GAWTC 1 cut(s) 15
PkrI GCNGC 4 cut(s) 79, 82, 234, 244
PleI GAGTC 2 cut(s) 95, 388
PpsI GAGTC 2 cut(s) 95, 388
Ppu21I YACGTR 1 cut(s) 278
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PspPI GGNCC 1 cut(s) 185
PstNI CAGNNNCTG 1 cut(s) 397
PsuI RGATCY 1 cut(s) 67
RsaI GTAC 4 cut(s) 56, 152, 276, 365
RsaNI GTAC 4 cut(s) 55, 151, 275, 364
SatI GCNGC 4 cut(s) 78, 81, 233, 243
Sau3AI GATC 3 cut(s) 67, 124, 402
Sau96I GGNCC 1 cut(s) 185
ScaI AGTACT 1 cut(s) 56
SchI GAGTC 2 cut(s) 96, 388
ScrFI CCNGG 1 cut(s) 171
SetI ASST 6 cut(s) 172, 280, 299, 311, 324, 375
SexAI ACCWGGT 1 cut(s) 169
SfcI CTRYAG 1 cut(s) 237
Sse9I AATT 1 cut(s) 348
SsiI CCGC 4 cut(s) 81, 242, 261, 281
SspMI CTAG 3 cut(s) 197, 323, 374
StyD4I CCNGG 1 cut(s) 169
TaaI ACNGT 3 cut(s) 22, 181, 251
TaiI ACGT 1 cut(s) 280
TasI AATT 1 cut(s) 348
TatI WGTACW 1 cut(s) 54
TauI GCSGC 2 cut(s) 83, 245
TfiI GAWTC 1 cut(s) 15
TscAI CASTG 3 cut(s) 27, 39, 254
TseFI GTSAC 1 cut(s) 206
TseI GCWGC 2 cut(s) 77, 232
Tsp45I GTSAC 1 cut(s) 206
TspRI CASTG 3 cut(s) 27, 39, 254
XmiI GTMKAC 1 cut(s) 293
XspI CTAG 3 cut(s) 197, 323, 374
ZrmI AGTACT 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.