Rh2BG414400

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000520
Physical Location & Seq
Forward (+)
58526050 .. 58539679
13630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG414400.1

Sequence Viewer

Length: 455 bp
ATGGCGGAAGAAACCTTATTCGATTCAATCTCTGAAGACATGGACAGAAATTTCTCAGGGTCGATTGTAAAATTGAGAGGAGCGTCGGACGATGAGATCTCGATGGGGCAGCGCGGGGATTTGATGAAGCCCAATAGCTCAGAAGAGCCAGATCGCCTCAGGAAAAAACCCAGCAAGGACATTGCACACCCCGCAAAACCAGACATCAGTGCTGCTGCAGCCAGTCTCGACCCTAAATTAGCTGCCCTTTCTCTGGGAAACAAAGGGGTGTTTAACGTTATGAGTGGGTACCATGTCCATGTTAATTCTTTGAAGATGGAGGAAACAGCCTCAACGTCGTCTTGTATTGCTGAGGGAAGCCTTCGTGCTTATTGGAGTGAACTCTGGAAGTCAACTGTGCTTCTAAGAGTCAAGGTGTTCATTTGGCGTTTACTGCATGGCGCATTACCTACCAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

151

Amino Acids

16.56

Weight (kDa)

6.42

Isoelectric Point (pI)

36.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 288
AccB1I GGYRCC 1 cut(s) 288
AccII CGCG 1 cut(s) 114
AciI CCGC 3 cut(s) 5, 114, 192
AclI AACGTT 1 cut(s) 276
AcsI RAATTY 1 cut(s) 49
AcuI CTGAAG 1 cut(s) 54
AfaI GTAC 1 cut(s) 290
AfiI CCNNNNNNNGG 1 cut(s) 253
AgsI TTSAA 2 cut(s) 27, 313
AluBI AGCT 2 cut(s) 138, 242
AluI AGCT 2 cut(s) 138, 242
Alw26I GTCTC 1 cut(s) 230
ApeKI GCWGC 5 cut(s) 109, 212, 215, 218, 242
ApoI RAATTY 1 cut(s) 49
Asp718I GGTACC 1 cut(s) 288
AspLEI GCGC 2 cut(s) 114, 443
AxyI CCTNAGG 1 cut(s) 158
BanI GGYRCC 1 cut(s) 288
BbsI GAAGAC 1 cut(s) 42
BbvCI CCTCAGC 1 cut(s) 351
BbvI GCAGC 5 cut(s) 121, 199, 202, 229, 230
BccI CCATC 2 cut(s) 97, 310
BcoDI GTCTC 1 cut(s) 230
BfmI CTRYAG 1 cut(s) 216
BglII AGATCT 1 cut(s) 96
BisI GCNGC 5 cut(s) 110, 213, 216, 219, 243
BlsI GCNGC 5 cut(s) 111, 214, 217, 220, 244
BmiI GGNNCC 1 cut(s) 290
BpiI GAAGAC 1 cut(s) 42
Bpu10I CCTNAGC 1 cut(s) 351
Bsc4I CCNNNNNNNGG 1 cut(s) 253
Bse1I ACTGG 1 cut(s) 222
Bse21I CCTNAGG 1 cut(s) 158
Bse3DI GCAATG 1 cut(s) 180
BseLI CCNNNNNNNGG 1 cut(s) 253
BseMI GCAATG 1 cut(s) 180
BseMII CTCAG 4 cut(s) 69, 153, 172, 342
BseNI ACTGG 1 cut(s) 222
BseRI GAGGAG 1 cut(s) 93
BseXI GCAGC 5 cut(s) 121, 199, 202, 229, 230
BseYI CCCAGC 1 cut(s) 170
Bsh1236I CGCG 1 cut(s) 114
BshNI GGYRCC 1 cut(s) 288
BslI CCNNNNNNNGG 1 cut(s) 253
BsmAI GTCTC 1 cut(s) 230
Bsp143I GATC 2 cut(s) 96, 151
BspACI CCGC 3 cut(s) 5, 114, 192
BspCNI CTCAG 4 cut(s) 68, 152, 171, 343
BspFNI CGCG 1 cut(s) 114
BspLI GGNNCC 1 cut(s) 290
BspMAI CTGCAG 1 cut(s) 220
BspQI GCTCTTC 1 cut(s) 138
BspT107I GGYRCC 1 cut(s) 288
BsrDI GCAATG 1 cut(s) 180
BsrI ACTGG 1 cut(s) 222
BssMI GATC 2 cut(s) 96, 151
Bst4CI ACNGT 1 cut(s) 397
Bst6I CTCTTC 1 cut(s) 138
BstDEI CTNAG 5 cut(s) 55, 139, 158, 351, 404
BstFNI CGCG 1 cut(s) 114
BstHHI GCGC 2 cut(s) 114, 443
BstKTI GATC 2 cut(s) 99, 154
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 2 cut(s) 96, 151
BstMWI GCNNNNNNNGC 3 cut(s) 191, 218, 433
BstSFI CTRYAG 1 cut(s) 216
BstUI CGCG 1 cut(s) 114
BstV1I GCAGC 5 cut(s) 121, 199, 202, 229, 230
BstV2I GAAGAC 1 cut(s) 42
BstX2I RGATCY 1 cut(s) 96
BstYI RGATCY 1 cut(s) 96
Bsu36I CCTNAGG 1 cut(s) 158
BtsIMutI CAGTG 1 cut(s) 214
CfoI GCGC 2 cut(s) 114, 443
CseI GACGC 1 cut(s) 72
Csp6I GTAC 1 cut(s) 289
CviAII CATG 4 cut(s) 40, 293, 299, 437
CviJI RGCY 7 cut(s) 130, 138, 148, 221, 242, 329, 360
CviKI_1 RGCY 7 cut(s) 130, 138, 148, 221, 242, 329, 360
CviQI GTAC 1 cut(s) 289
DdeI CTNAG 5 cut(s) 55, 139, 158, 351, 404
DpnI GATC 2 cut(s) 98, 153
DpnII GATC 2 cut(s) 96, 151
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
EciI GGCGGA 1 cut(s) 20
Eco57I CTGAAG 1 cut(s) 54
Eco81I CCTNAGG 1 cut(s) 158
FaeI CATG 4 cut(s) 43, 296, 302, 440
FaiI YATR 5 cut(s) 41, 281, 294, 300, 438
FatI CATG 4 cut(s) 39, 292, 298, 436
FauI CCCGC 2 cut(s) 107, 199
Fnu4HI GCNGC 5 cut(s) 110, 213, 216, 219, 243
Fsp4HI GCNGC 5 cut(s) 110, 213, 216, 219, 243
GlaI GCGC 2 cut(s) 113, 442
GluI GCNGC 5 cut(s) 110, 213, 216, 219, 243
GsaI CCCAGC 1 cut(s) 174
HgaI GACGC 1 cut(s) 72
HhaI GCGC 2 cut(s) 114, 443
Hin1II CATG 4 cut(s) 43, 296, 302, 440
Hin6I GCGC 2 cut(s) 112, 441
HinP1I GCGC 2 cut(s) 112, 441
HincII GTYRAC 1 cut(s) 393
HindII GTYRAC 1 cut(s) 393
HinfI GANTC 2 cut(s) 23, 408
Hpy166II GTNNAC 3 cut(s) 380, 393, 431
Hpy188I TCNGA 3 cut(s) 34, 88, 142
Hpy188III TCNNGA 4 cut(s) 100, 160, 227, 385
Hpy8I GTNNAC 3 cut(s) 380, 393, 431
Hpy99I CGWCG 2 cut(s) 88, 340
HpyAV CCTTC 1 cut(s) 371
HpyCH4III ACNGT 1 cut(s) 397
HpyCH4IV ACGT 2 cut(s) 276, 335
HpyCH4V TGCA 3 cut(s) 185, 218, 436
HpyF10VI GCNNNNNNNGC 3 cut(s) 191, 218, 433
HpyF3I CTNAG 5 cut(s) 55, 139, 158, 351, 404
HpySE526I ACGT 2 cut(s) 276, 335
Hsp92II CATG 4 cut(s) 43, 296, 302, 440
HspAI GCGC 2 cut(s) 112, 441
KpnI GGTACC 1 cut(s) 292
Kzo9I GATC 2 cut(s) 96, 151
LguI GCTCTTC 1 cut(s) 138
LmnI GCTCC 1 cut(s) 80
LpnPI CCDG 8 cut(s) 42, 145, 162, 184, 213, 235, 239, 370
Lsp1109I GCAGC 5 cut(s) 121, 199, 202, 229, 230
MaeII ACGT 2 cut(s) 276, 335
MalI GATC 2 cut(s) 98, 153
MboI GATC 2 cut(s) 96, 151
MboII GAAGA 4 cut(s) 20, 47, 155, 325
MflI RGATCY 1 cut(s) 96
MluCI AATT 4 cut(s) 49, 71, 236, 304
MlyI GAGTC 1 cut(s) 417
MmeI TCCRAC 1 cut(s) 66
MnlI CCTC 5 cut(s) 71, 167, 313, 340, 346
MseI TTAA 2 cut(s) 273, 303
MslI CAYNNNNRTG 1 cut(s) 297
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 3 cut(s) 191, 218, 433
NdeII GATC 2 cut(s) 96, 151
NlaIII CATG 4 cut(s) 43, 296, 302, 440
NlaIV GGNNCC 1 cut(s) 290
PciSI GCTCTTC 1 cut(s) 138
PfeI GAWTC 1 cut(s) 23
PkrI GCNGC 5 cut(s) 111, 214, 217, 220, 244
PleI GAGTC 1 cut(s) 416
PpsI GAGTC 1 cut(s) 416
Psp1406I AACGTT 1 cut(s) 276
PspFI CCCAGC 1 cut(s) 170
PspN4I GGNNCC 1 cut(s) 290
PstI CTGCAG 1 cut(s) 220
PsuI RGATCY 1 cut(s) 96
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
RseI CAYNNNNRTG 1 cut(s) 297
SapI GCTCTTC 1 cut(s) 138
SaqAI TTAA 2 cut(s) 273, 303
SatI GCNGC 5 cut(s) 110, 213, 216, 219, 243
Sau3AI GATC 2 cut(s) 96, 151
SchI GAGTC 1 cut(s) 417
SetI ASST 7 cut(s) 17, 140, 244, 279, 338, 417, 451
SfcI CTRYAG 1 cut(s) 216
SmiMI CAYNNNNRTG 1 cut(s) 297
Sse9I AATT 4 cut(s) 49, 71, 236, 304
SsiI CCGC 3 cut(s) 5, 114, 192
TaaI ACNGT 1 cut(s) 397
TaiI ACGT 2 cut(s) 279, 338
TaqI TCGA 4 cut(s) 21, 62, 101, 228
TasI AATT 4 cut(s) 49, 71, 236, 304
TfiI GAWTC 1 cut(s) 23
Tru1I TTAA 2 cut(s) 273, 303
Tru9I TTAA 2 cut(s) 273, 303
TscAI CASTG 1 cut(s) 214
TseI GCWGC 5 cut(s) 109, 212, 215, 218, 242
TspDTI ATGAA 2 cut(s) 140, 409
TspRI CASTG 1 cut(s) 214
XapI RAATTY 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.