RLG00000019773

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000520
Physical Location & Seq
Reverse (-)
56538390 .. 56540397
2008 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019773

Sequence Viewer

Length: 741 bp
ATGGGGCAGCGCGGGGATTTGATGAAGCCCAATAGCTCCGAGGCCAAAACAAAGTCAGAACTCGAGGATGATGTTTCGGACGGTGATATCTCGGTCACCGATCATACTGATTTGGTCCTGGAGGAGCCAGATGGCCTCGGGAAAAAACCTGGCAAGGACATTGCACACCCCGCAAAACCAGACATCAGTGCTGCTGCAGCCAGTCTCAACCCTAAATTAGCCGCCCTTTCTCTGGAAAACAAAGGGAAACGGTTGTGCTCTGGACCAAAAGGTCGTATTTCTCGAAGGCGCAATCGAAGAGATAAGGGAGCATCCATTGGTCTAGGCATCAAGTCAAAAGAACCAAAGGCTACTGGAGTATCAGACAAAAACAATAAAAAAGTGGCTGCAGTTGCTTCTTCTACTTCTGTCGTCACCGAAAGAGGAGGATGTCAGATCTGCGGTCATGATCACCAGCACATTCGTTGCCCATACTTGGAGTTGGTTCCACCTGGCGGAACTGTTGGCCCTGACTATCTAGTAGTATGCGGCGAATGTGGTTATGAGTTAAAGCAGCCTATTCCGGCTTTTTGTTGGTCGTGTGGTTATTGGGGAGGACGTGCGGTGGAGGCGTCTACCTTTGATTATAGCTTTCGTTACTACCTAGATGAATTTTATATAGAAGAACCAGTTACGGAAGAGTACATGGACCCAGACAAGTACACAGAACAAAAACCTGTAATGGCACAGTCCTCACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

247

Amino Acids

26.74

Weight (kDa)

6.01

Isoelectric Point (pI)

44.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 270
AccI GTMKAC 1 cut(s) 614
AccII CGCG 1 cut(s) 12
AciI CCGC 7 cut(s) 12, 171, 222, 441, 495, 528, 602
AcsI RAATTY 1 cut(s) 650
AcyI GRCGYC 1 cut(s) 611
AfaI GTAC 2 cut(s) 683, 701
AfiI CCNNNNNNNGG 3 cut(s) 232, 475, 494
AjiI CACGTC 1 cut(s) 599
AjnI CCWGG 3 cut(s) 117, 148, 490
AluBI AGCT 2 cut(s) 36, 630
AluI AGCT 2 cut(s) 36, 630
Alw21I GWGCWC 1 cut(s) 260
Alw26I GTCTC 1 cut(s) 209
Ama87I CYCGRG 2 cut(s) 62, 137
AoxI GGCC 3 cut(s) 42, 133, 505
ApeKI GCWGC 6 cut(s) 7, 191, 194, 197, 386, 553
ApoI RAATTY 1 cut(s) 650
AspLEI GCGC 2 cut(s) 12, 291
AspS9I GGNCC 4 cut(s) 115, 263, 506, 688
AsuHPI GGTGA 4 cut(s) 88, 95, 406, 443
AvaI CYCGRG 2 cut(s) 62, 137
AvaII GGWCC 3 cut(s) 115, 263, 688
BaeI ACNNNNGTAYC 2 cut(s) 342, 375
Bbv12I GWGCWC 1 cut(s) 260
BbvI GCAGC 6 cut(s) 19, 178, 181, 209, 373, 565
BccI CCATC 1 cut(s) 125
BciT130I CCWGG 3 cut(s) 119, 150, 492
BclI TGATCA 1 cut(s) 448
BcoDI GTCTC 1 cut(s) 209
BfaI CTAG 3 cut(s) 323, 518, 644
BfmI CTRYAG 2 cut(s) 195, 387
BglII AGATCT 1 cut(s) 435
BisI GCNGC 8 cut(s) 8, 192, 195, 198, 222, 387, 529, 554
BlsI GCNGC 8 cut(s) 9, 193, 196, 199, 223, 388, 530, 555
Bme1390I CCNGG 3 cut(s) 119, 150, 492
Bme18I GGWCC 3 cut(s) 115, 263, 688
BmeT110I CYCGRG 2 cut(s) 62, 137
BmgBI CACGTC 1 cut(s) 599
BmgT120I GGNCC 4 cut(s) 115, 263, 506, 688
BmiI GGNNCC 3 cut(s) 126, 486, 690
BmrFI CCNGG 3 cut(s) 119, 150, 492
BmsI GCATC 2 cut(s) 320, 336
BpmI CTGGAG 2 cut(s) 140, 375
BsaHI GRCGYC 1 cut(s) 611
BsaJI CCNNGG 2 cut(s) 39, 136
Bsc4I CCNNNNNNNGG 3 cut(s) 232, 475, 494
Bse1I ACTGG 3 cut(s) 201, 358, 668
Bse3DI GCAATG 1 cut(s) 159
BseBI CCWGG 3 cut(s) 119, 150, 492
BseDI CCNNGG 2 cut(s) 39, 136
BseGI GGATG 3 cut(s) 73, 311, 434
BseLI CCNNNNNNNGG 3 cut(s) 232, 475, 494
BseMI GCAATG 1 cut(s) 159
BseNI ACTGG 3 cut(s) 201, 358, 668
BseRI GAGGAG 2 cut(s) 137, 438
BseXI GCAGC 6 cut(s) 19, 178, 181, 209, 373, 565
Bsh1236I CGCG 1 cut(s) 12
BshFI GGCC 3 cut(s) 44, 135, 507
BsiHKAI GWGCWC 1 cut(s) 260
BsiHKCI CYCGRG 2 cut(s) 62, 137
BsiSI CCGG 1 cut(s) 563
BslI CCNNNNNNNGG 3 cut(s) 232, 475, 494
BsmAI GTCTC 1 cut(s) 209
BsnI GGCC 3 cut(s) 44, 135, 507
BsoBI CYCGRG 2 cut(s) 62, 137
Bsp1286I GDGCHC 1 cut(s) 260
Bsp143I GATC 3 cut(s) 100, 435, 448
BspACI CCGC 7 cut(s) 12, 171, 222, 441, 495, 528, 602
BspANI GGCC 3 cut(s) 44, 135, 507
BspFNI CGCG 1 cut(s) 12
BspHI TCATGA 1 cut(s) 445
BspLI GGNNCC 3 cut(s) 126, 486, 690
BspMAI CTGCAG 2 cut(s) 199, 391
BsrDI GCAATG 1 cut(s) 159
BsrI ACTGG 3 cut(s) 201, 358, 668
BssECI CCNNGG 2 cut(s) 39, 136
BssMI GATC 3 cut(s) 100, 435, 448
BssNI GRCGYC 1 cut(s) 611
Bst2UI CCWGG 3 cut(s) 119, 150, 492
Bst4CI ACNGT 5 cut(s) 83, 252, 502, 729, 738
Bst6I CTCTTC 2 cut(s) 292, 672
BstACI GRCGYC 1 cut(s) 611
BstEII GGTNACC 1 cut(s) 94
BstF5I GGATG 3 cut(s) 73, 311, 434
BstFNI CGCG 1 cut(s) 12
BstHHI GCGC 2 cut(s) 12, 291
BstKTI GATC 3 cut(s) 103, 438, 451
BstMAI GTCTC 1 cut(s) 209
BstMBI GATC 3 cut(s) 100, 435, 448
BstMWI GCNNNNNNNGC 4 cut(s) 170, 197, 392, 608
BstNI CCWGG 3 cut(s) 119, 150, 492
BstPI GGTNACC 1 cut(s) 94
BstSCI CCNGG 3 cut(s) 117, 148, 490
BstSFI CTRYAG 2 cut(s) 195, 387
BstUI CGCG 1 cut(s) 12
BstV1I GCAGC 6 cut(s) 19, 178, 181, 209, 373, 565
BstX2I RGATCY 1 cut(s) 435
BstYI RGATCY 1 cut(s) 435
BsuRI GGCC 3 cut(s) 44, 135, 507
BtrI CACGTC 1 cut(s) 599
BtsCI GGATG 3 cut(s) 73, 311, 434
BtsIMutI CAGTG 2 cut(s) 193, 734
CciI TCATGA 1 cut(s) 445
CfoI GCGC 2 cut(s) 12, 291
Cfr13I GGNCC 4 cut(s) 115, 263, 506, 688
CseI GACGC 1 cut(s) 600
Csp6I GTAC 2 cut(s) 682, 700
CviAII CATG 2 cut(s) 446, 685
CviQI GTAC 2 cut(s) 682, 700
DpnI GATC 3 cut(s) 102, 437, 450
DpnII GATC 3 cut(s) 100, 435, 448
DrdI GACNNNNNNGTC 1 cut(s) 270
DseDI GACNNNNNNGTC 1 cut(s) 270
Eam1104I CTCTTC 2 cut(s) 292, 672
EarI CTCTTC 2 cut(s) 292, 672
EciI GGCGGA 1 cut(s) 510
Eco32I GATATC 1 cut(s) 88
Eco47I GGWCC 3 cut(s) 115, 263, 688
Eco88I CYCGRG 2 cut(s) 62, 137
Eco91I GGTNACC 1 cut(s) 94
EcoO65I GGTNACC 1 cut(s) 94
EcoRII CCWGG 3 cut(s) 117, 148, 490
EcoRV GATATC 1 cut(s) 88
FaeI CATG 2 cut(s) 449, 688
FaiI YATR 9 cut(s) 105, 447, 472, 526, 543, 627, 657, 659, 686
FatI CATG 2 cut(s) 445, 684
FauI CCCGC 2 cut(s) 5, 178
FbaI TGATCA 1 cut(s) 448
FblI GTMKAC 1 cut(s) 614
Fnu4HI GCNGC 8 cut(s) 8, 192, 195, 198, 222, 387, 529, 554
FokI GGATG 3 cut(s) 80, 298, 441
Fsp4HI GCNGC 8 cut(s) 8, 192, 195, 198, 222, 387, 529, 554
FspBI CTAG 3 cut(s) 323, 518, 644
GlaI GCGC 2 cut(s) 11, 290
GluI GCNGC 8 cut(s) 8, 192, 195, 198, 222, 387, 529, 554
GsuI CTGGAG 2 cut(s) 140, 375
HaeIII GGCC 3 cut(s) 44, 135, 507
HapII CCGG 1 cut(s) 563
HgaI GACGC 1 cut(s) 600
HhaI GCGC 2 cut(s) 12, 291
Hin1I GRCGYC 1 cut(s) 611
Hin1II CATG 2 cut(s) 449, 688
Hin6I GCGC 2 cut(s) 10, 289
HinP1I GCGC 2 cut(s) 10, 289
HpaII CCGG 1 cut(s) 563
HphI GGTGA 4 cut(s) 88, 95, 406, 443
Hpy166II GTNNAC 2 cut(s) 615, 702
Hpy188I TCNGA 5 cut(s) 40, 58, 79, 364, 435
Hpy188III TCNNGA 5 cut(s) 139, 233, 261, 282, 446
Hpy8I GTNNAC 2 cut(s) 615, 702
HpyAV CCTTC 1 cut(s) 279
HpyCH4III ACNGT 5 cut(s) 83, 252, 502, 729, 738
HpyCH4IV ACGT 1 cut(s) 598
HpyCH4V TGCA 3 cut(s) 164, 197, 389
HpyF10VI GCNNNNNNNGC 4 cut(s) 170, 197, 392, 608
HpySE526I ACGT 1 cut(s) 598
Hsp92I GRCGYC 1 cut(s) 611
Hsp92II CATG 2 cut(s) 449, 688
HspAI GCGC 2 cut(s) 10, 289
Ksp22I TGATCA 1 cut(s) 448
Kzo9I GATC 3 cut(s) 100, 435, 448
LmnI GCTCC 3 cut(s) 41, 124, 308
Lsp1109I GCAGC 6 cut(s) 19, 178, 181, 209, 373, 565
LweI GCATC 2 cut(s) 320, 336
MaeI CTAG 3 cut(s) 323, 518, 644
MaeII ACGT 1 cut(s) 598
MaeIII GTNAC 4 cut(s) 94, 412, 635, 670
MalI GATC 3 cut(s) 102, 437, 450
MboI GATC 3 cut(s) 100, 435, 448
MboII GAAGA 4 cut(s) 309, 390, 674, 689
MflI RGATCY 1 cut(s) 435
MhlI GDGCHC 1 cut(s) 260
MluCI AATT 2 cut(s) 215, 650
MnlI CCTC 8 cut(s) 34, 58, 115, 146, 416, 419, 587, 601
MseI TTAA 1 cut(s) 548
MspI CCGG 1 cut(s) 563
MspR9I CCNGG 3 cut(s) 119, 150, 492
MvaI CCWGG 3 cut(s) 119, 150, 492
MvnI CGCG 1 cut(s) 12
MwoI GCNNNNNNNGC 4 cut(s) 170, 197, 392, 608
NdeII GATC 3 cut(s) 100, 435, 448
NlaIII CATG 2 cut(s) 449, 688
NlaIV GGNNCC 3 cut(s) 126, 486, 690
NmuCI GTSAC 2 cut(s) 94, 412
PaeR7I CTCGAG 1 cut(s) 62
PagI TCATGA 1 cut(s) 445
PcsI WCGNNNNNNNCGW 1 cut(s) 280
PfoI TCCNGGA 1 cut(s) 117
PkrI GCNGC 8 cut(s) 9, 193, 196, 199, 223, 388, 530, 555
Psp6I CCWGG 3 cut(s) 117, 148, 490
PspEI GGTNACC 1 cut(s) 94
PspGI CCWGG 3 cut(s) 117, 148, 490
PspN4I GGNNCC 3 cut(s) 126, 486, 690
PspPI GGNCC 4 cut(s) 115, 263, 506, 688
PspXI VCTCGAGB 1 cut(s) 62
PstI CTGCAG 2 cut(s) 199, 391
PsuI RGATCY 1 cut(s) 435
RsaI GTAC 2 cut(s) 683, 701
RsaNI GTAC 2 cut(s) 682, 700
SaqAI TTAA 1 cut(s) 548
SatI GCNGC 8 cut(s) 8, 192, 195, 198, 222, 387, 529, 554
Sau3AI GATC 3 cut(s) 100, 435, 448
Sau96I GGNCC 4 cut(s) 115, 263, 506, 688
ScrFI CCNGG 3 cut(s) 119, 150, 492
SduI GDGCHC 1 cut(s) 260
SetI ASST 9 cut(s) 38, 151, 274, 493, 601, 620, 632, 645, 718
SfaNI GCATC 2 cut(s) 320, 336
SfcI CTRYAG 2 cut(s) 195, 387
Sfr274I CTCGAG 1 cut(s) 62
SinI GGWCC 3 cut(s) 115, 263, 688
SlaI CTCGAG 1 cut(s) 62
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
Sse9I AATT 2 cut(s) 215, 650
SsiI CCGC 7 cut(s) 12, 171, 222, 441, 495, 528, 602
SspMI CTAG 3 cut(s) 323, 518, 644
StyD4I CCNGG 3 cut(s) 117, 148, 490
TaaI ACNGT 5 cut(s) 83, 252, 502, 729, 738
TaiI ACGT 1 cut(s) 601
TaqI TCGA 3 cut(s) 63, 283, 295
TaqII GACCGA 1 cut(s) 82
TasI AATT 2 cut(s) 215, 650
TatI WGTACW 2 cut(s) 681, 699
TauI GCSGC 2 cut(s) 224, 531
Tru1I TTAA 1 cut(s) 548
Tru9I TTAA 1 cut(s) 548
TscAI CASTG 2 cut(s) 193, 741
TseFI GTSAC 2 cut(s) 94, 412
TseI GCWGC 6 cut(s) 7, 191, 194, 197, 386, 553
Tsp45I GTSAC 2 cut(s) 94, 412
TspDTI ATGAA 2 cut(s) 38, 663
TspGWI ACGGA 1 cut(s) 689
TspRI CASTG 2 cut(s) 193, 741
VpaK11BI GGWCC 3 cut(s) 115, 263, 688
XapI RAATTY 1 cut(s) 650
XhoI CTCGAG 1 cut(s) 62
XmiI GTMKAC 1 cut(s) 614
XspI CTAG 3 cut(s) 323, 518, 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.