pycom05g02240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000520
Physical Location & Seq
Forward (+)
2586863 .. 2587681
819 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g02240.3

Sequence Viewer

Length: 429 bp
ATGGGGAGACATAACATTTCAAATGATGCAGGTGAGAAGAAAGAAAAAGAGGCTTTGGATGACTCTATGACTCAACTACAACTTGAGAATGCCCCGCCTACTTTAAAGAAGAAGCAGAAACGTCGCCGTACTTCCAAGTGTTCAGTTTGCCTTCGGAAGGGTTGTGACCAAAGTATGTGCCCCTATTGGTCCAGGATCCCGCCTGGCGTGACTCTGGTTGGTGAGGGCTATGAACTAGCTTGTAGGCGCTGTATTCGCCAGGATAATATGTGTGGGTACAATATGTCATATGCTCTGCCATTTGCTGTGTTAATTTTGTATGTTGTGAATGCTTCAGTAGTTACATATAATGCATACATGAGGAAAAGGTATGCAGATGTTAGGGGCAGAGCGTCTGTTAGGTGCCGGGTGCAGATGTTTGAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

16.31

Weight (kDa)

9.55

Isoelectric Point (pI)

63.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 20
Acc36I ACCTGC 1 cut(s) 20
AccB1I GGYRCC 1 cut(s) 402
AciI CCGC 2 cut(s) 95, 200
AclWI GGATC 2 cut(s) 190, 203
AcuI CTGAAG 1 cut(s) 318
AfaI GTAC 2 cut(s) 130, 278
AfiI CCNNNNNNNGG 1 cut(s) 157
AgsI TTSAA 1 cut(s) 21
AjnI CCWGG 3 cut(s) 191, 202, 258
AluBI AGCT 1 cut(s) 239
AluI AGCT 1 cut(s) 239
AlwI GGATC 2 cut(s) 190, 203
AspLEI GCGC 1 cut(s) 249
AspS9I GGNCC 1 cut(s) 189
AsuC2I CCSGG 1 cut(s) 407
AsuHPI GGTGA 2 cut(s) 44, 233
AvaII GGWCC 1 cut(s) 189
BaeGI GKGCMC 1 cut(s) 182
BamHI GGATCC 1 cut(s) 195
BanI GGYRCC 1 cut(s) 402
BceAI ACGGC 1 cut(s) 111
BcgI CGANNNNNNTGC 2 cut(s) 104, 138
BciT130I CCWGG 3 cut(s) 193, 204, 260
BcnI CCSGG 1 cut(s) 407
BfaI CTAG 1 cut(s) 236
BfoI RGCGCY 1 cut(s) 250
BfuAI ACCTGC 1 cut(s) 20
Bme1390I CCNGG 4 cut(s) 193, 204, 260, 407
Bme18I GGWCC 1 cut(s) 189
BmgT120I GGNCC 1 cut(s) 189
BmiI GGNNCC 2 cut(s) 197, 404
BmrFI CCNGG 4 cut(s) 193, 204, 260, 407
BmsI GCATC 1 cut(s) 16
BpuEI CTTGAG 1 cut(s) 104
BpuMI CCSGG 1 cut(s) 407
Bsc4I CCNNNNNNNGG 1 cut(s) 157
BseBI CCWGG 3 cut(s) 193, 204, 260
BseGI GGATG 1 cut(s) 64
BseLI CCNNNNNNNGG 1 cut(s) 157
BseSI GKGCMC 1 cut(s) 182
BshNI GGYRCC 1 cut(s) 402
BsiSI CCGG 1 cut(s) 406
BslI CCNNNNNNNGG 1 cut(s) 157
BsmI GAATGC 2 cut(s) 94, 334
Bsp1286I GDGCHC 1 cut(s) 182
Bsp143I GATC 1 cut(s) 195
BspACI CCGC 2 cut(s) 95, 200
BspLI GGNNCC 2 cut(s) 197, 404
BspMI ACCTGC 1 cut(s) 20
BspPI GGATC 2 cut(s) 190, 203
BspT107I GGYRCC 1 cut(s) 402
BssMI GATC 1 cut(s) 195
Bst2UI CCWGG 3 cut(s) 193, 204, 260
BstENI CCTNNNNNAGG 1 cut(s) 155
BstF5I GGATG 1 cut(s) 64
BstH2I RGCGCY 1 cut(s) 250
BstHHI GCGC 1 cut(s) 249
BstKTI GATC 1 cut(s) 198
BstMBI GATC 1 cut(s) 195
BstMWI GCNNNNNNNGC 1 cut(s) 255
BstNI CCWGG 3 cut(s) 193, 204, 260
BstSCI CCNGG 4 cut(s) 191, 202, 258, 405
BstSLI GKGCMC 1 cut(s) 182
BstX2I RGATCY 1 cut(s) 195
BstYI RGATCY 1 cut(s) 195
BtsCI GGATG 1 cut(s) 64
BveI ACCTGC 1 cut(s) 20
CfoI GCGC 1 cut(s) 249
Cfr13I GGNCC 1 cut(s) 189
CseI GACGC 1 cut(s) 381
Csp6I GTAC 2 cut(s) 129, 277
CviAII CATG 1 cut(s) 358
CviJI RGCY 3 cut(s) 53, 228, 239
CviKI_1 RGCY 3 cut(s) 53, 228, 239
CviQI GTAC 2 cut(s) 129, 277
DpnI GATC 1 cut(s) 197
DpnII GATC 1 cut(s) 195
DraI TTTAAA 1 cut(s) 105
Eco47I GGWCC 1 cut(s) 189
Eco57I CTGAAG 1 cut(s) 318
EcoNI CCTNNNNNAGG 1 cut(s) 155
EcoRII CCWGG 3 cut(s) 191, 202, 258
EcoT22I ATGCAT 1 cut(s) 355
FaeI CATG 1 cut(s) 361
FatI CATG 1 cut(s) 357
FauI CCCGC 2 cut(s) 102, 207
FauNDI CATATG 1 cut(s) 289
FokI GGATG 1 cut(s) 71
FspBI CTAG 1 cut(s) 236
GlaI GCGC 1 cut(s) 248
HaeII RGCGCY 1 cut(s) 250
HapII CCGG 1 cut(s) 406
HgaI GACGC 1 cut(s) 381
HhaI GCGC 1 cut(s) 249
Hin1II CATG 1 cut(s) 361
Hin6I GCGC 1 cut(s) 247
HinP1I GCGC 1 cut(s) 247
HinfI GANTC 3 cut(s) 62, 70, 211
HpaII CCGG 1 cut(s) 406
HphI GGTGA 2 cut(s) 44, 233
Hpy188I TCNGA 1 cut(s) 156
Hpy99I CGWCG 1 cut(s) 126
HpyAV CCTTC 2 cut(s) 151, 161
HpyCH4IV ACGT 1 cut(s) 121
HpyCH4V TGCA 4 cut(s) 29, 353, 374, 412
HpyF10VI GCNNNNNNNGC 1 cut(s) 255
HpySE526I ACGT 1 cut(s) 121
Hsp92II CATG 1 cut(s) 361
HspAI GCGC 1 cut(s) 247
Kzo9I GATC 1 cut(s) 195
LpnPI CCDG 9 cut(s) 15, 178, 189, 200, 205, 216, 245, 272, 419
LweI GCATC 1 cut(s) 16
MaeI CTAG 1 cut(s) 236
MaeII ACGT 1 cut(s) 121
MaeIII GTNAC 3 cut(s) 164, 208, 340
MalI GATC 1 cut(s) 197
MboI GATC 1 cut(s) 195
MboII GAAGA 2 cut(s) 49, 121
MflI RGATCY 1 cut(s) 195
MhlI GDGCHC 1 cut(s) 182
MluCI AATT 1 cut(s) 312
MlyI GAGTC 3 cut(s) 56, 64, 205
MnlI CCTC 3 cut(s) 43, 217, 354
Mph1103I ATGCAT 1 cut(s) 355
MseI TTAA 2 cut(s) 104, 311
MspI CCGG 1 cut(s) 406
MspR9I CCNGG 4 cut(s) 193, 204, 260, 407
Mva1269I GAATGC 2 cut(s) 94, 334
MvaI CCWGG 3 cut(s) 193, 204, 260
MwoI GCNNNNNNNGC 1 cut(s) 255
NciI CCSGG 1 cut(s) 407
NdeI CATATG 1 cut(s) 289
NdeII GATC 1 cut(s) 195
NlaIII CATG 1 cut(s) 361
NlaIV GGNNCC 2 cut(s) 197, 404
NmuCI GTSAC 2 cut(s) 164, 208
NsiI ATGCAT 1 cut(s) 355
PaqCI CACCTGC 1 cut(s) 20
PctI GAATGC 2 cut(s) 94, 334
PfoI TCCNGGA 1 cut(s) 191
PleI GAGTC 3 cut(s) 56, 64, 205
PpsI GAGTC 3 cut(s) 56, 64, 205
Psp6I CCWGG 3 cut(s) 191, 202, 258
PspGI CCWGG 3 cut(s) 191, 202, 258
PspN4I GGNNCC 2 cut(s) 197, 404
PspPI GGNCC 1 cut(s) 189
PsuI RGATCY 1 cut(s) 195
RsaI GTAC 2 cut(s) 130, 278
RsaNI GTAC 2 cut(s) 129, 277
SaqAI TTAA 2 cut(s) 104, 311
Sau3AI GATC 1 cut(s) 195
Sau96I GGNCC 1 cut(s) 189
SchI GAGTC 3 cut(s) 56, 64, 205
ScrFI CCNGG 4 cut(s) 193, 204, 260, 407
SduI GDGCHC 1 cut(s) 182
SetI ASST 5 cut(s) 34, 124, 241, 371, 404
SfaNI GCATC 1 cut(s) 16
SinI GGWCC 1 cut(s) 189
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
Sse9I AATT 1 cut(s) 312
SsiI CCGC 2 cut(s) 95, 200
SspMI CTAG 1 cut(s) 236
StyD4I CCNGG 4 cut(s) 191, 202, 258, 405
TaiI ACGT 1 cut(s) 124
TasI AATT 1 cut(s) 312
Tru1I TTAA 2 cut(s) 104, 311
Tru9I TTAA 2 cut(s) 104, 311
TseFI GTSAC 2 cut(s) 164, 208
Tsp45I GTSAC 2 cut(s) 164, 208
TspDTI ATGAA 1 cut(s) 246
VpaK11BI GGWCC 1 cut(s) 189
XagI CCTNNNNNAGG 1 cut(s) 155
XspI CTAG 1 cut(s) 236
Zsp2I ATGCAT 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.