pycom05g02610

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000520
Physical Location & Seq
Reverse (-)
3097238 .. 3103118
5881 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g02610.1

Sequence Viewer

Length: 384 bp
ATGAATCCAGGCCAACCGCCTAAGCACCTAGGGGAGAAGAAAGAAGAAGAGGCATTGGATGACTCTATGACTCAACTACAACTTGAGAATGCCCCGCCTACTTTAAAGAAGAAGAAGAAACGTTGCCGTACTTCCAAGTGTTCAGTTTGCCTTCGGAAGGGCTGTGACCTAAGTATGTGCCTCTATTGGTCTAGGATCCCGCCTGGCGTGACTATTGTTGGTGAGGGCTATGAACTAGCTTGTAGGCGCTGTATTCGCAAGGATAATATGTGTGGGCACAATATGTCATATTCTCGCGCCATTTTCTGTGTTAATTGTAATGACTATGGCCACCGTGTTCTTGACTGCCCGATGCTAAATATGACAAGACTGATTCCAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.42

Weight (kDa)

9.02

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 297
AciI CCGC 3 cut(s) 17, 95, 200
AclI AACGTT 1 cut(s) 121
AclWI GGATC 2 cut(s) 190, 203
AcoI YGGCCR 1 cut(s) 328
AfaI GTAC 1 cut(s) 130
AfiI CCNNNNNNNGG 1 cut(s) 157
AjnI CCWGG 3 cut(s) 7, 202, 376
AluBI AGCT 1 cut(s) 239
AluI AGCT 1 cut(s) 239
AlwI GGATC 2 cut(s) 190, 203
AoxI GGCC 2 cut(s) 10, 328
AspA2I CCTAGG 1 cut(s) 28
AspLEI GCGC 2 cut(s) 249, 299
AsuHPI GGTGA 1 cut(s) 233
AvrII CCTAGG 1 cut(s) 28
BaeGI GKGCMC 1 cut(s) 279
BalI TGGCCA 1 cut(s) 330
BamHI GGATCC 1 cut(s) 195
BceAI ACGGC 1 cut(s) 111
BciT130I CCWGG 3 cut(s) 9, 204, 378
BfaI CTAG 3 cut(s) 29, 192, 236
BfoI RGCGCY 1 cut(s) 250
BlnI CCTAGG 1 cut(s) 28
Bme1390I CCNGG 3 cut(s) 9, 204, 378
BmiI GGNNCC 1 cut(s) 197
BmrFI CCNGG 3 cut(s) 9, 204, 378
BmsI GCATC 1 cut(s) 342
Bpu10I CCTNAGC 1 cut(s) 21
BpuEI CTTGAG 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 28
Bsc4I CCNNNNNNNGG 1 cut(s) 157
BseBI CCWGG 3 cut(s) 9, 204, 378
BseDI CCNNGG 1 cut(s) 28
BseGI GGATG 1 cut(s) 64
BseLI CCNNNNNNNGG 1 cut(s) 157
BseSI GKGCMC 1 cut(s) 279
Bsh1236I CGCG 1 cut(s) 297
BshFI GGCC 2 cut(s) 12, 330
BslI CCNNNNNNNGG 1 cut(s) 157
BsmI GAATGC 1 cut(s) 94
BsnI GGCC 2 cut(s) 12, 330
Bsp1286I GDGCHC 1 cut(s) 279
Bsp143I GATC 1 cut(s) 195
BspACI CCGC 3 cut(s) 17, 95, 200
BspANI GGCC 2 cut(s) 12, 330
BspFNI CGCG 1 cut(s) 297
BspLI GGNNCC 1 cut(s) 197
BspPI GGATC 2 cut(s) 190, 203
BssECI CCNNGG 1 cut(s) 28
BssMI GATC 1 cut(s) 195
BssT1I CCWWGG 1 cut(s) 28
Bst2UI CCWGG 3 cut(s) 9, 204, 378
Bst4CI ACNGT 1 cut(s) 335
Bst6I CTCTTC 1 cut(s) 42
BstDEI CTNAG 2 cut(s) 21, 170
BstENI CCTNNNNNAGG 1 cut(s) 155
BstF5I GGATG 1 cut(s) 64
BstFNI CGCG 1 cut(s) 297
BstH2I RGCGCY 1 cut(s) 250
BstHHI GCGC 2 cut(s) 249, 299
BstKTI GATC 1 cut(s) 198
BstMBI GATC 1 cut(s) 195
BstMWI GCNNNNNNNGC 1 cut(s) 255
BstNI CCWGG 3 cut(s) 9, 204, 378
BstSCI CCNGG 3 cut(s) 7, 202, 376
BstSLI GKGCMC 1 cut(s) 279
BstUI CGCG 1 cut(s) 297
BstX2I RGATCY 1 cut(s) 195
BstYI RGATCY 1 cut(s) 195
BsuRI GGCC 2 cut(s) 12, 330
BtsCI GGATG 1 cut(s) 64
CfoI GCGC 2 cut(s) 249, 299
Csp6I GTAC 1 cut(s) 129
CviJI RGCY 5 cut(s) 12, 162, 228, 239, 330
CviKI_1 RGCY 5 cut(s) 12, 162, 228, 239, 330
CviQI GTAC 1 cut(s) 129
DdeI CTNAG 2 cut(s) 21, 170
DpnI GATC 1 cut(s) 197
DpnII GATC 1 cut(s) 195
DraI TTTAAA 1 cut(s) 105
EaeI YGGCCR 1 cut(s) 328
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
Eco130I CCWWGG 1 cut(s) 28
EcoNI CCTNNNNNAGG 1 cut(s) 155
EcoRII CCWGG 3 cut(s) 7, 202, 376
EcoT14I CCWWGG 1 cut(s) 28
ErhI CCWWGG 1 cut(s) 28
FaiI YATR 8 cut(s) 68, 176, 231, 269, 284, 289, 327, 362
FauI CCCGC 2 cut(s) 102, 207
FokI GGATG 1 cut(s) 71
FspBI CTAG 3 cut(s) 29, 192, 236
GlaI GCGC 2 cut(s) 248, 298
HaeII RGCGCY 1 cut(s) 250
HaeIII GGCC 2 cut(s) 12, 330
HhaI GCGC 2 cut(s) 249, 299
Hin6I GCGC 2 cut(s) 247, 297
HinP1I GCGC 2 cut(s) 247, 297
HinfI GANTC 4 cut(s) 4, 62, 70, 373
HphI GGTGA 1 cut(s) 233
Hpy188I TCNGA 1 cut(s) 156
Hpy188III TCNNGA 1 cut(s) 341
HpyAV CCTTC 2 cut(s) 151, 161
HpyCH4III ACNGT 1 cut(s) 335
HpyCH4IV ACGT 1 cut(s) 121
HpyF10VI GCNNNNNNNGC 1 cut(s) 255
HpyF3I CTNAG 2 cut(s) 21, 170
HpySE526I ACGT 1 cut(s) 121
HspAI GCGC 2 cut(s) 247, 297
Kzo9I GATC 1 cut(s) 195
LpnPI CCDG 4 cut(s) 21, 189, 216, 363
LweI GCATC 1 cut(s) 342
MaeI CTAG 3 cut(s) 29, 192, 236
MaeII ACGT 1 cut(s) 121
MaeIII GTNAC 2 cut(s) 164, 208
MalI GATC 1 cut(s) 197
MboI GATC 1 cut(s) 195
MboII GAAGA 6 cut(s) 49, 56, 59, 121, 124, 127
MflI RGATCY 1 cut(s) 195
MhlI GDGCHC 1 cut(s) 279
MlsI TGGCCA 1 cut(s) 330
MluCI AATT 1 cut(s) 313
MluNI TGGCCA 1 cut(s) 330
MlyI GAGTC 2 cut(s) 56, 64
MnlI CCTC 3 cut(s) 43, 191, 217
Mox20I TGGCCA 1 cut(s) 330
MscI TGGCCA 1 cut(s) 330
MseI TTAA 2 cut(s) 104, 312
Msp20I TGGCCA 1 cut(s) 330
MspR9I CCNGG 3 cut(s) 9, 204, 378
Mva1269I GAATGC 1 cut(s) 94
MvaI CCWGG 3 cut(s) 9, 204, 378
MvnI CGCG 1 cut(s) 297
MwoI GCNNNNNNNGC 1 cut(s) 255
NdeII GATC 1 cut(s) 195
NlaIV GGNNCC 1 cut(s) 197
NmuCI GTSAC 2 cut(s) 164, 208
PctI GAATGC 1 cut(s) 94
PfeI GAWTC 2 cut(s) 4, 373
PleI GAGTC 2 cut(s) 56, 64
PpsI GAGTC 2 cut(s) 56, 64
Psp1406I AACGTT 1 cut(s) 121
Psp6I CCWGG 3 cut(s) 7, 202, 376
PspGI CCWGG 3 cut(s) 7, 202, 376
PspN4I GGNNCC 1 cut(s) 197
PsuI RGATCY 1 cut(s) 195
RsaI GTAC 1 cut(s) 130
RsaNI GTAC 1 cut(s) 129
SaqAI TTAA 2 cut(s) 104, 312
Sau3AI GATC 1 cut(s) 195
SchI GAGTC 2 cut(s) 56, 64
ScrFI CCNGG 3 cut(s) 9, 204, 378
SduI GDGCHC 1 cut(s) 279
SetI ASST 5 cut(s) 30, 124, 171, 241, 382
SfaNI GCATC 1 cut(s) 342
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
Sse9I AATT 1 cut(s) 313
SsiI CCGC 3 cut(s) 17, 95, 200
SspMI CTAG 3 cut(s) 29, 192, 236
StyD4I CCNGG 3 cut(s) 7, 202, 376
StyI CCWWGG 1 cut(s) 28
TaaI ACNGT 1 cut(s) 335
TaiI ACGT 1 cut(s) 124
TasI AATT 1 cut(s) 313
TfiI GAWTC 2 cut(s) 4, 373
Tru1I TTAA 2 cut(s) 104, 312
Tru9I TTAA 2 cut(s) 104, 312
TseFI GTSAC 2 cut(s) 164, 208
Tsp45I GTSAC 2 cut(s) 164, 208
TspDTI ATGAA 2 cut(s) 17, 246
XagI CCTNNNNNAGG 1 cut(s) 155
XmaJI CCTAGG 1 cut(s) 28
XspI CTAG 3 cut(s) 29, 192, 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.