Rorug02G0354500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000520
Physical Location & Seq
Reverse (-)
44583054 .. 44587272
4219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0354500.1

Sequence Viewer

Length: 762 bp
ATGGCCAACATGACACTCACGACAAAACCCACTTCGAGACTCGCTCTAAGAATCAAAGCCAAAGCCTCCAGAGCCACTGCCATGGCCTCCATATCCACCAAAACCAAGGTGGTGCCTGCAGTCATAGTCGGCGCCGGAAGGGTTGGGAAGGCCTTAAATGACATGGGCAATGGTGATGACTTGCTCGTCAAAAGAGGAGAGCCTGTGCCTCTTGACTTTGAAGGCCCAATCTTGGTTTGTACTAGAAATGATGATCTCGACGCTGTTCTTGAGTCCACTCCAAGGGCCAGATGGAACGATTTGGTTTTTTTCCAGAATGGAATGCTGGAACCATGGCTTGAAAGTAAAGGTCTTGGTGATGCGAACCAAGTGTTGGCATATTTTGCTGTCTCCAAGCTGGGAGAACCTCCAGTTGATGGAATAACCGATGCCAATCCTGAAGGACTGACAGCATCATATGGGAAGTGGGCATCTGCAGTGGCTGACAGATTACATGCTGGAGGCCTCACTTGCAAGGTTTCCAGCCTCATTGCAGAGCTTGCCACTGCAGCAGCTGCTGAGAAGGGATTGGTATTTGAAGGAGCCATGGAGGATAGATTATGTGCGTACTCACGAGCTGTTGCCCACTTTCCTACTGCAGTCAAAGAGTTTAAATGGAGAAATGGTTGGTTCTATTCCCTCTCTGAAAGGGCAATTGCAGAAGGAAAGCCTGATCCCTGTCGCCTACATACGGCATGGCTCAAAGAATTGAACGTTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

253

Amino Acids

27.22

Weight (kDa)

7.65

Isoelectric Point (pI)

20.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 185
AccB1I GGYRCC 2 cut(s) 112, 131
AccB7I CCANNNNNTGG 2 cut(s) 373, 416
AclI AACGTT 1 cut(s) 753
AclWI GGATC 1 cut(s) 707
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 459
AcyI GRCGYC 1 cut(s) 132
AfaI GTAC 2 cut(s) 241, 608
AfiI CCNNNNNNNGG 5 cut(s) 232, 282, 373, 416, 730
AgsI TTSAA 4 cut(s) 221, 341, 578, 751
AjuI GAANNNNNNNTTGG 2 cut(s) 356, 388
AluBI AGCT 4 cut(s) 397, 538, 554, 617
AluI AGCT 4 cut(s) 397, 538, 554, 617
Alw26I GTCTC 2 cut(s) 31, 394
AlwI GGATC 1 cut(s) 707
AlwNI CAGNNNCTG 3 cut(s) 482, 554, 557
AoxI GGCC 6 cut(s) 3, 84, 150, 223, 285, 502
ApeKI GCWGC 3 cut(s) 548, 551, 554
AspLEI GCGC 1 cut(s) 134
AspS9I GGNCC 2 cut(s) 224, 285
AsuHPI GGTGA 2 cut(s) 185, 368
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 112, 131
BauI CACGAG 1 cut(s) 612
BbvI GCAGC 3 cut(s) 541, 560, 563
BccI CCATC 2 cut(s) 285, 410
BceAI ACGGC 1 cut(s) 747
BcoDI GTCTC 2 cut(s) 31, 394
BfaI CTAG 1 cut(s) 243
BfmI CTRYAG 4 cut(s) 117, 474, 546, 636
BfoI RGCGCY 1 cut(s) 135
BisI GCNGC 3 cut(s) 549, 552, 555
BlsI GCNGC 3 cut(s) 550, 553, 556
BmgT120I GGNCC 2 cut(s) 224, 285
BmiI GGNNCC 4 cut(s) 114, 133, 330, 583
BmsI GCATC 4 cut(s) 349, 418, 461, 479
BplI GAGNNNNNCTC 2 cut(s) 28, 60
BpmI CTGGAG 3 cut(s) 52, 393, 519
BpuEI CTTGAG 1 cut(s) 290
BsaBI GATNNNNATC 1 cut(s) 432
BsaHI GRCGYC 1 cut(s) 132
BsaJI CCNNGG 5 cut(s) 81, 105, 281, 332, 585
BsaXI ACNNNNNCTCC 4 cut(s) 189, 219, 649, 679
Bsc4I CCNNNNNNNGG 5 cut(s) 232, 282, 373, 416, 730
Bse1I ACTGG 1 cut(s) 410
Bse3DI GCAATG 2 cut(s) 175, 528
Bse8I GATNNNNATC 1 cut(s) 432
BseDI CCNNGG 5 cut(s) 81, 105, 281, 332, 585
BseJI GATNNNNATC 1 cut(s) 432
BseLI CCNNNNNNNGG 5 cut(s) 232, 282, 373, 416, 730
BseMI GCAATG 2 cut(s) 175, 528
BseMII CTCAG 1 cut(s) 549
BseNI ACTGG 1 cut(s) 410
BseRI GAGGAG 1 cut(s) 210
BseXI GCAGC 3 cut(s) 541, 560, 563
BseYI CCCAGC 1 cut(s) 397
BshFI GGCC 6 cut(s) 5, 86, 152, 225, 287, 504
BshNI GGYRCC 2 cut(s) 112, 131
BsiSI CCGG 1 cut(s) 135
BslI CCNNNNNNNGG 5 cut(s) 232, 282, 373, 416, 730
BsmAI GTCTC 2 cut(s) 31, 394
BsmI GAATGC 1 cut(s) 327
BsnI GGCC 6 cut(s) 5, 86, 152, 225, 287, 504
Bsp143I GATC 2 cut(s) 253, 712
Bsp19I CCATGG 3 cut(s) 81, 332, 585
BspANI GGCC 6 cut(s) 5, 86, 152, 225, 287, 504
BspCNI CTCAG 1 cut(s) 550
BspLI GGNNCC 4 cut(s) 114, 133, 330, 583
BspMAI CTGCAG 4 cut(s) 121, 478, 550, 640
BspPI GGATC 1 cut(s) 707
BspT107I GGYRCC 2 cut(s) 112, 131
BsrDI GCAATG 2 cut(s) 175, 528
BsrI ACTGG 1 cut(s) 410
BssECI CCNNGG 5 cut(s) 81, 105, 281, 332, 585
BssMI GATC 2 cut(s) 253, 712
BssNI GRCGYC 1 cut(s) 132
BssSI CACGAG 1 cut(s) 612
BssT1I CCWWGG 5 cut(s) 81, 105, 281, 332, 585
Bst2BI CACGAG 1 cut(s) 612
BstACI GRCGYC 1 cut(s) 132
BstAPI GCANNNNNTGC 3 cut(s) 383, 539, 554
BstC8I GCNNGC 2 cut(s) 117, 540
BstDEI CTNAG 2 cut(s) 47, 558
BstDSI CCRYGG 3 cut(s) 81, 332, 585
BstH2I RGCGCY 1 cut(s) 135
BstHHI GCGC 1 cut(s) 134
BstKTI GATC 2 cut(s) 256, 715
BstMAI GTCTC 2 cut(s) 31, 394
BstMBI GATC 2 cut(s) 253, 712
BstMWI GCNNNNNNNGC 6 cut(s) 71, 383, 510, 539, 548, 554
BstNSI RCATGY 1 cut(s) 497
BstSFI CTRYAG 4 cut(s) 117, 474, 546, 636
BstV1I GCAGC 3 cut(s) 541, 560, 563
BstXI CCANNNNNNTGG 1 cut(s) 82
BsuRI GGCC 6 cut(s) 5, 86, 152, 225, 287, 504
BtgI CCRYGG 3 cut(s) 81, 332, 585
BtsI GCAGTG 3 cut(s) 75, 483, 543
BtsIMutI CAGTG 3 cut(s) 75, 483, 543
Cac8I GCNNGC 2 cut(s) 117, 540
CaiI CAGNNNCTG 3 cut(s) 482, 554, 557
CfoI GCGC 1 cut(s) 134
Cfr13I GGNCC 2 cut(s) 224, 285
CseI GACGC 1 cut(s) 269
Csp6I GTAC 2 cut(s) 240, 607
CviAII CATG 7 cut(s) 10, 82, 163, 333, 494, 586, 735
CviQI GTAC 2 cut(s) 240, 607
DdeI CTNAG 2 cut(s) 47, 558
DinI GGCGCC 1 cut(s) 133
DpnI GATC 2 cut(s) 255, 714
DpnII GATC 2 cut(s) 253, 712
DraI TTTAAA 1 cut(s) 652
DrdI GACNNNNNNGTC 1 cut(s) 185
DseDI GACNNNNNNGTC 1 cut(s) 185
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 5 cut(s) 81, 105, 281, 332, 585
Eco147I AGGCCT 2 cut(s) 152, 504
Eco57I CTGAAG 1 cut(s) 459
EcoT14I CCWWGG 5 cut(s) 81, 105, 281, 332, 585
EgeI GGCGCC 1 cut(s) 133
EheI GGCGCC 1 cut(s) 133
ErhI CCWWGG 5 cut(s) 81, 105, 281, 332, 585
FaeI CATG 7 cut(s) 13, 85, 166, 336, 497, 589, 738
FatI CATG 7 cut(s) 9, 81, 162, 332, 493, 585, 734
FauNDI CATATG 1 cut(s) 457
Fnu4HI GCNGC 3 cut(s) 549, 552, 555
Fsp4HI GCNGC 3 cut(s) 549, 552, 555
FspBI CTAG 1 cut(s) 243
GlaI GCGC 1 cut(s) 133
GluI GCNGC 3 cut(s) 549, 552, 555
GsaI CCCAGC 1 cut(s) 401
GsuI CTGGAG 3 cut(s) 52, 393, 519
HaeII RGCGCY 1 cut(s) 135
HaeIII GGCC 6 cut(s) 5, 86, 152, 225, 287, 504
HapII CCGG 1 cut(s) 135
HgaI GACGC 1 cut(s) 269
HhaI GCGC 1 cut(s) 134
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 7 cut(s) 13, 85, 166, 336, 497, 589, 738
Hin6I GCGC 1 cut(s) 132
HinP1I GCGC 1 cut(s) 132
HinfI GANTC 3 cut(s) 39, 51, 272
HpaII CCGG 1 cut(s) 135
HphI GGTGA 2 cut(s) 185, 368
Hpy166II GTNNAC 1 cut(s) 276
Hpy188I TCNGA 1 cut(s) 685
Hpy188III TCNNGA 9 cut(s) 19, 36, 69, 212, 257, 269, 313, 437, 612
Hpy8I GTNNAC 1 cut(s) 276
Hpy99I CGWCG 1 cut(s) 263
HpyAV CCTTC 7 cut(s) 132, 142, 215, 434, 556, 572, 695
HpyCH4IV ACGT 1 cut(s) 753
HpyCH4V TGCA 7 cut(s) 119, 476, 513, 533, 548, 638, 698
HpyF10VI GCNNNNNNNGC 6 cut(s) 71, 383, 510, 539, 548, 554
HpyF3I CTNAG 2 cut(s) 47, 558
HpySE526I ACGT 1 cut(s) 753
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 7 cut(s) 13, 85, 166, 336, 497, 589, 738
HspAI GCGC 1 cut(s) 132
KasI GGCGCC 1 cut(s) 131
Kzo9I GATC 2 cut(s) 253, 712
LmnI GCTCC 1 cut(s) 581
Lsp1109I GCAGC 3 cut(s) 541, 560, 563
LweI GCATC 4 cut(s) 349, 418, 461, 479
MaeI CTAG 1 cut(s) 243
MaeII ACGT 1 cut(s) 753
MalI GATC 2 cut(s) 255, 714
MboI GATC 2 cut(s) 253, 712
MfeI CAATTG 1 cut(s) 693
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 693, 746
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 132
MlyI GAGTC 2 cut(s) 33, 281
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 155, 651
MslI CAYNNNNRTG 1 cut(s) 80
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 554
MspI CCGG 1 cut(s) 135
MunI CAATTG 1 cut(s) 693
Mva1269I GAATGC 1 cut(s) 327
MwoI GCNNNNNNNGC 6 cut(s) 71, 383, 510, 539, 548, 554
NarI GGCGCC 1 cut(s) 132
NcoI CCATGG 3 cut(s) 81, 332, 585
NdeI CATATG 1 cut(s) 457
NdeII GATC 2 cut(s) 253, 712
NlaIII CATG 7 cut(s) 13, 85, 166, 336, 497, 589, 738
NlaIV GGNNCC 4 cut(s) 114, 133, 330, 583
NspI RCATGY 1 cut(s) 497
PceI AGGCCT 2 cut(s) 152, 504
PctI GAATGC 1 cut(s) 327
PfeI GAWTC 1 cut(s) 51
PflMI CCANNNNNTGG 2 cut(s) 373, 416
PkrI GCNGC 3 cut(s) 550, 553, 556
PleI GAGTC 2 cut(s) 33, 280
PluTI GGCGCC 1 cut(s) 135
PpsI GAGTC 2 cut(s) 33, 280
Psp1406I AACGTT 1 cut(s) 753
PspFI CCCAGC 1 cut(s) 397
PspN4I GGNNCC 4 cut(s) 114, 133, 330, 583
PspPI GGNCC 2 cut(s) 224, 285
PstI CTGCAG 4 cut(s) 121, 478, 550, 640
PstNI CAGNNNCTG 3 cut(s) 482, 554, 557
PvuII CAGCTG 1 cut(s) 554
RsaI GTAC 2 cut(s) 241, 608
RsaNI GTAC 2 cut(s) 240, 607
RseI CAYNNNNRTG 1 cut(s) 80
SaqAI TTAA 2 cut(s) 155, 651
SatI GCNGC 3 cut(s) 549, 552, 555
Sau3AI GATC 2 cut(s) 253, 712
Sau96I GGNCC 2 cut(s) 224, 285
SchI GAGTC 2 cut(s) 33, 281
SetI ASST 9 cut(s) 111, 352, 399, 409, 519, 540, 556, 619, 756
SfaNI GCATC 4 cut(s) 349, 418, 461, 479
SfcI CTRYAG 4 cut(s) 117, 474, 546, 636
SfoI GGCGCC 1 cut(s) 133
SmiMI CAYNNNNRTG 1 cut(s) 80
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
Sse9I AATT 2 cut(s) 693, 746
SseBI AGGCCT 2 cut(s) 152, 504
SspDI GGCGCC 1 cut(s) 131
SspMI CTAG 1 cut(s) 243
StuI AGGCCT 2 cut(s) 152, 504
StyI CCWWGG 5 cut(s) 81, 105, 281, 332, 585
TaiI ACGT 1 cut(s) 756
TaqI TCGA 2 cut(s) 35, 258
TasI AATT 2 cut(s) 693, 746
TatI WGTACW 1 cut(s) 239
TfiI GAWTC 1 cut(s) 51
Tru1I TTAA 2 cut(s) 155, 651
Tru9I TTAA 2 cut(s) 155, 651
TscAI CASTG 3 cut(s) 82, 483, 550
TseI GCWGC 3 cut(s) 548, 551, 554
TspRI CASTG 3 cut(s) 82, 483, 550
Van91I CCANNNNNTGG 2 cut(s) 373, 416
XceI RCATGY 1 cut(s) 497
XcmI CCANNNNNNNNNTGG 2 cut(s) 106, 288
XspI CTAG 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.