Rorug07G0173400

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000520
Physical Location & Seq
Forward (+)
14214787 .. 14218236
3450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0173400.1

Sequence Viewer

Length: 999 bp
ATGTCGTCGTCTTCTTCGTCTTCCGCGTCGGCCTACGACATGCCATGGGTGGAGAAGTACAGGCCGAACAAGGTCGGCGACATCGTCGGCAACGAAGACGCCGTGTCGAGGCTCCAGGTCATCGCCCGCGACGGCAACATGCCCAATCTCATCTTAGCCGGTCCTCCTGGAACTGGTAAGACCACTAGTATACTTGCTCTTGCACACGAGCTTTTGGGACCAAATTATAGGGAGGGTGTTTTAGAGCTGAATGCATCTGATGACAGGGGAATAGATGTGGTGAGGAACAAGATTAAAATGTTTGCTCAAAAGAAAGTAACACTTCCTCCTGGGCGCCATAAAATTGTCATCTTGGATGAAGCTGACAGCATGACATCTGGAGCGCAACAAGCTTTGAGGCGGACAATGGAAATATATTCAAATTCCACACGGTTCGCTCTTGCATGCAATACTTCCTCCAAAATCATTGAGCCTATTCAGAGTAGATGTGCCCTAGTCCGATTTTCTAGATTATCTGATCAGGAGATACTTGGTCGTCTAATGGTTGTGGTCCAAGCTGAAAAGGTTCCCTATGTTCCAGAAGGTCTGGAAGCCATCATTTTTACTGCTGATGGTGATATGAGGCAGGCATTGAATAACTTGCAAGCTACAAACAGTGGATTTCGGTTTGTCAACCAAGAAAATGTTTTCAAGGTCTGTGACCAGCCTCATCCATTGCATGTAAAGAATATGGTTCGTAACATACTTGAAGGGAAATTTGACGACGCTTGTTCGGGTCTCAAGCAGCTCTATGATTTGGGCTATTCACCCACTGACATAATCACAACTTTTTTCCGTATCATCAAAAATTATGATATGGCTGAGTATTTGAAACTGGAATTCATGAAGGAAACTGGGTTTGCTCACATGAGAATCTGCGATGGAGTTGGCTCATATCTTCAGCTGTGTGGTCTTTTGGCTAAGCTTTCCCTAGTCCGTGACACAGCCAAAGCGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

332

Amino Acids

36.79

Weight (kDa)

8.13

Isoelectric Point (pI)

42.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_14 PF13173 49 - 150 2.7e-06 AAA domain
AAA PF00004 50 - 167 1.3e-13 ATPase family associated with various cellular activities (AAA)
DNA_pol3_delta2 PF13177 91 - 171 3.6e-08 DNA polymerase III, delta subunit
Rep_fac_C PF08542 236 - 321 9.9e-25 Replication factor C C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 333
AccI GTMKAC 1 cut(s) 190
AccII CGCG 2 cut(s) 26, 129
AciI CCGC 3 cut(s) 24, 127, 400
AcsI RAATTY 3 cut(s) 421, 755, 878
AcuI CTGAAG 1 cut(s) 923
AcyI GRCGYC 2 cut(s) 99, 334
AfaI GTAC 1 cut(s) 59
AfiI CCNNNNNNNGG 2 cut(s) 108, 173
AgsI TTSAA 5 cut(s) 420, 634, 691, 749, 871
AhdI GACNNNNNGTC 1 cut(s) 103
AhlI ACTAGT 1 cut(s) 185
AjnI CCWGG 3 cut(s) 114, 166, 328
AluBI AGCT 9 cut(s) 211, 247, 362, 392, 557, 647, 787, 943, 964
AluI AGCT 9 cut(s) 211, 247, 362, 392, 557, 647, 787, 943, 964
Alw26I GTCTC 1 cut(s) 782
AoxI GGCC 2 cut(s) 30, 62
ApeKI GCWGC 1 cut(s) 784
ApoI RAATTY 3 cut(s) 421, 755, 878
Asp700I GAANNNNTTC 1 cut(s) 564
AspLEI GCGC 2 cut(s) 336, 385
AspS9I GGNCC 3 cut(s) 161, 218, 550
AsuHPI GGTGA 3 cut(s) 292, 626, 798
AvaII GGWCC 3 cut(s) 161, 218, 550
BaeGI GKGCMC 1 cut(s) 493
BanI GGYRCC 1 cut(s) 333
BauI CACGAG 1 cut(s) 206
BbsI GAAGAC 3 cut(s) 3, 12, 102
BbvI GCAGC 1 cut(s) 796
BccI CCATC 3 cut(s) 602, 605, 914
BceAI ACGGC 2 cut(s) 86, 148
BciT130I CCWGG 3 cut(s) 116, 168, 330
BclI TGATCA 1 cut(s) 517
BcoDI GTCTC 1 cut(s) 782
BcuI ACTAGT 1 cut(s) 185
BfaI CTAG 4 cut(s) 186, 494, 507, 971
BfoI RGCGCY 1 cut(s) 337
BisI GCNGC 1 cut(s) 785
BlpI GCTNAGC 1 cut(s) 960
BlsI GCNGC 1 cut(s) 786
Bme1390I CCNGG 3 cut(s) 116, 168, 330
Bme18I GGWCC 3 cut(s) 161, 218, 550
BmeRI GACNNNNNGTC 1 cut(s) 103
BmgT120I GGNCC 3 cut(s) 161, 218, 550
BmiI GGNNCC 4 cut(s) 113, 219, 335, 567
BmrFI CCNGG 3 cut(s) 116, 168, 330
BmrI ACTGGG 1 cut(s) 903
BmsI GCATC 1 cut(s) 263
BmuI ACTGGG 1 cut(s) 903
BpiI GAAGAC 3 cut(s) 3, 12, 102
BpmI CTGGAG 2 cut(s) 98, 399
Bpu1102I GCTNAGC 1 cut(s) 960
BpuEI CTTGAG 1 cut(s) 764
BsaHI GRCGYC 2 cut(s) 99, 334
BsaI GGTCTC 1 cut(s) 782
BsaJI CCNNGG 2 cut(s) 44, 329
BsaXI ACNNNNNCTCC 2 cut(s) 310, 340
Bsc4I CCNNNNNNNGG 2 cut(s) 108, 173
Bse118I RCCGGY 1 cut(s) 158
Bse1I ACTGG 3 cut(s) 178, 879, 898
Bse3DI GCAATG 1 cut(s) 713
BseBI CCWGG 3 cut(s) 116, 168, 330
BseDI CCNNGG 2 cut(s) 44, 329
BseGI GGATG 2 cut(s) 361, 709
BseLI CCNNNNNNNGG 2 cut(s) 108, 173
BseMI GCAATG 1 cut(s) 713
BseMII CTCAG 1 cut(s) 852
BseNI ACTGG 3 cut(s) 178, 879, 898
BseSI GKGCMC 1 cut(s) 493
BseXI GCAGC 1 cut(s) 796
Bsh1236I CGCG 2 cut(s) 26, 129
BshFI GGCC 2 cut(s) 32, 64
BshNI GGYRCC 1 cut(s) 333
BsiSI CCGG 1 cut(s) 159
BslFI GGGAC 1 cut(s) 231
BslI CCNNNNNNNGG 2 cut(s) 108, 173
BsmAI GTCTC 1 cut(s) 782
BsmFI GGGAC 1 cut(s) 231
BsmI GAATGC 1 cut(s) 256
BsnI GGCC 2 cut(s) 32, 64
Bso31I GGTCTC 1 cut(s) 782
Bsp1286I GDGCHC 1 cut(s) 493
Bsp143I GATC 1 cut(s) 517
Bsp1720I GCTNAGC 1 cut(s) 960
Bsp19I CCATGG 1 cut(s) 44
BspACI CCGC 3 cut(s) 24, 127, 400
BspANI GGCC 2 cut(s) 32, 64
BspCNI CTCAG 1 cut(s) 853
BspFNI CGCG 2 cut(s) 26, 129
BspHI TCATGA 1 cut(s) 882
BspLI GGNNCC 4 cut(s) 113, 219, 335, 567
BspT107I GGYRCC 1 cut(s) 333
BspTNI GGTCTC 1 cut(s) 782
BsrDI GCAATG 1 cut(s) 713
BsrFI RCCGGY 1 cut(s) 158
BsrI ACTGG 3 cut(s) 178, 879, 898
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 2 cut(s) 44, 329
BssMI GATC 1 cut(s) 517
BssNAI GTATAC 1 cut(s) 191
BssNI GRCGYC 2 cut(s) 99, 334
BssSI CACGAG 1 cut(s) 206
BssT1I CCWWGG 1 cut(s) 44
Bst1107I GTATAC 1 cut(s) 191
Bst2BI CACGAG 1 cut(s) 206
Bst2UI CCWGG 3 cut(s) 116, 168, 330
Bst4CI ACNGT 2 cut(s) 432, 656
BstACI GRCGYC 2 cut(s) 99, 334
BstC8I GCNNGC 4 cut(s) 127, 445, 627, 645
BstDEI CTNAG 3 cut(s) 154, 861, 960
BstDSI CCRYGG 1 cut(s) 44
BstF5I GGATG 2 cut(s) 361, 709
BstFNI CGCG 2 cut(s) 26, 129
BstH2I RGCGCY 1 cut(s) 337
BstHHI GCGC 2 cut(s) 336, 385
BstKTI GATC 1 cut(s) 520
BstMAI GTCTC 1 cut(s) 782
BstMBI GATC 1 cut(s) 517
BstMWI GCNNNNNNNGC 1 cut(s) 389
BstNI CCWGG 3 cut(s) 116, 168, 330
BstNSI RCATGY 4 cut(s) 43, 142, 447, 722
BstSCI CCNGG 3 cut(s) 114, 166, 328
BstSLI GKGCMC 1 cut(s) 493
BstUI CGCG 2 cut(s) 26, 129
BstV1I GCAGC 1 cut(s) 796
BstV2I GAAGAC 3 cut(s) 3, 12, 102
BstZ17I GTATAC 1 cut(s) 191
BsuRI GGCC 2 cut(s) 32, 64
BtgI CCRYGG 1 cut(s) 44
BtgZI GCGATG 2 cut(s) 106, 933
BtsCI GGATG 2 cut(s) 361, 709
BtsIMutI CAGTG 2 cut(s) 661, 810
Cac8I GCNNGC 4 cut(s) 127, 445, 627, 645
CciI TCATGA 1 cut(s) 882
CfoI GCGC 2 cut(s) 336, 385
Cfr10I RCCGGY 1 cut(s) 158
Cfr13I GGNCC 3 cut(s) 161, 218, 550
CseI GACGC 3 cut(s) 15, 107, 773
Csp6I GTAC 1 cut(s) 58
CviAII CATG 8 cut(s) 40, 45, 139, 370, 444, 719, 883, 907
CviQI GTAC 1 cut(s) 58
DdeI CTNAG 3 cut(s) 154, 861, 960
DinI GGCGCC 1 cut(s) 335
DpnI GATC 1 cut(s) 519
DpnII GATC 1 cut(s) 517
DriI GACNNNNNGTC 1 cut(s) 103
Eam1105I GACNNNNNGTC 1 cut(s) 103
EciI GGCGGA 1 cut(s) 415
Eco130I CCWWGG 1 cut(s) 44
Eco31I GGTCTC 1 cut(s) 782
Eco47I GGWCC 3 cut(s) 161, 218, 550
Eco57I CTGAAG 1 cut(s) 923
EcoRI GAATTC 1 cut(s) 878
EcoRII CCWGG 3 cut(s) 114, 166, 328
EcoT14I CCWWGG 1 cut(s) 44
EcoT22I ATGCAT 1 cut(s) 256
EgeI GGCGCC 1 cut(s) 335
EheI GGCGCC 1 cut(s) 335
ErhI CCWWGG 1 cut(s) 44
FaeI CATG 8 cut(s) 43, 48, 142, 373, 447, 722, 886, 910
FalI AAGNNNNNCTT 2 cut(s) 306, 338
FaqI GGGAC 1 cut(s) 231
FatI CATG 8 cut(s) 39, 44, 138, 369, 443, 718, 882, 906
FauI CCCGC 1 cut(s) 134
FbaI TGATCA 1 cut(s) 517
FblI GTMKAC 1 cut(s) 190
Fnu4HI GCNGC 1 cut(s) 785
FokI GGATG 2 cut(s) 368, 696
Fsp4HI GCNGC 1 cut(s) 785
FspBI CTAG 4 cut(s) 186, 494, 507, 971
GlaI GCGC 2 cut(s) 335, 384
GluI GCNGC 1 cut(s) 785
GsuI CTGGAG 2 cut(s) 98, 399
HaeII RGCGCY 1 cut(s) 337
HaeIII GGCC 2 cut(s) 32, 64
HapII CCGG 1 cut(s) 159
HgaI GACGC 3 cut(s) 15, 107, 773
HhaI GCGC 2 cut(s) 336, 385
Hin1I GRCGYC 2 cut(s) 99, 334
Hin1II CATG 8 cut(s) 43, 48, 142, 373, 447, 722, 886, 910
Hin6I GCGC 2 cut(s) 334, 383
HinP1I GCGC 2 cut(s) 334, 383
HincII GTYRAC 1 cut(s) 673
HindII GTYRAC 1 cut(s) 673
HindIII AAGCTT 2 cut(s) 390, 962
HinfI GANTC 1 cut(s) 912
HpaII CCGG 1 cut(s) 159
HphI GGTGA 3 cut(s) 292, 626, 798
Hpy166II GTNNAC 2 cut(s) 191, 673
Hpy188I TCNGA 4 cut(s) 259, 480, 500, 517
Hpy188III TCNNGA 6 cut(s) 378, 507, 521, 578, 587, 883
Hpy8I GTNNAC 2 cut(s) 191, 673
Hpy99I CGWCG 5 cut(s) 10, 31, 89, 134, 767
HpyAV CCTTC 3 cut(s) 575, 743, 880
HpyCH4III ACNGT 2 cut(s) 432, 656
HpyCH4V TGCA 6 cut(s) 203, 254, 443, 447, 643, 718
HpyF10VI GCNNNNNNNGC 1 cut(s) 389
HpyF3I CTNAG 3 cut(s) 154, 861, 960
Hsp92I GRCGYC 2 cut(s) 99, 334
Hsp92II CATG 8 cut(s) 43, 48, 142, 373, 447, 722, 886, 910
HspAI GCGC 2 cut(s) 334, 383
KasI GGCGCC 1 cut(s) 333
Ksp22I TGATCA 1 cut(s) 517
Kzo9I GATC 1 cut(s) 517
LmnI GCTCC 2 cut(s) 117, 380
Lsp1109I GCAGC 1 cut(s) 796
LweI GCATC 1 cut(s) 263
MaeI CTAG 4 cut(s) 186, 494, 507, 971
MaeIII GTNAC 4 cut(s) 316, 698, 737, 977
MalI GATC 1 cut(s) 519
MboI GATC 1 cut(s) 517
MboII GAAGA 5 cut(s) 3, 6, 12, 107, 929
MhlI GDGCHC 1 cut(s) 493
MluCI AATT 6 cut(s) 223, 342, 421, 755, 847, 878
Mly113I GGCGCC 1 cut(s) 334
MnlI CCTC 9 cut(s) 102, 174, 226, 276, 336, 390, 466, 615, 717
Mph1103I ATGCAT 1 cut(s) 256
MroXI GAANNNNTTC 1 cut(s) 564
MseI TTAA 1 cut(s) 294
MspA1I CMGCKG 1 cut(s) 943
MspI CCGG 1 cut(s) 159
MspR9I CCNGG 3 cut(s) 116, 168, 330
Mva1269I GAATGC 1 cut(s) 256
MvaI CCWGG 3 cut(s) 116, 168, 330
MvnI CGCG 2 cut(s) 26, 129
MwoI GCNNNNNNNGC 1 cut(s) 389
NarI GGCGCC 1 cut(s) 334
NcoI CCATGG 1 cut(s) 44
NdeII GATC 1 cut(s) 517
NlaIII CATG 8 cut(s) 43, 48, 142, 373, 447, 722, 886, 910
NlaIV GGNNCC 4 cut(s) 113, 219, 335, 567
NmuCI GTSAC 2 cut(s) 698, 977
NsiI ATGCAT 1 cut(s) 256
NspI RCATGY 4 cut(s) 43, 142, 447, 722
PaeI GCATGC 1 cut(s) 447
PagI TCATGA 1 cut(s) 882
PcsI WCGNNNNNNNCGW 5 cut(s) 14, 23, 81, 90, 99
PctI GAATGC 1 cut(s) 256
PdmI GAANNNNTTC 1 cut(s) 564
PfeI GAWTC 1 cut(s) 912
PflFI GACNNNGTC 1 cut(s) 83
PfoI TCCNGGA 1 cut(s) 166
PkrI GCNGC 1 cut(s) 786
PluTI GGCGCC 1 cut(s) 337
Psp6I CCWGG 3 cut(s) 114, 166, 328
PspGI CCWGG 3 cut(s) 114, 166, 328
PspN4I GGNNCC 4 cut(s) 113, 219, 335, 567
PspPI GGNCC 3 cut(s) 161, 218, 550
PsyI GACNNNGTC 1 cut(s) 83
PvuII CAGCTG 1 cut(s) 943
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
SaqAI TTAA 1 cut(s) 294
SatI GCNGC 1 cut(s) 785
Sau3AI GATC 1 cut(s) 517
Sau96I GGNCC 3 cut(s) 161, 218, 550
ScrFI CCNGG 3 cut(s) 116, 168, 330
SduI GDGCHC 1 cut(s) 493
SfaNI GCATC 1 cut(s) 263
SfoI GGCGCC 1 cut(s) 335
SinI GGWCC 3 cut(s) 161, 218, 550
SmlI CTYRAG 1 cut(s) 779
SmoI CTYRAG 1 cut(s) 779
SpeI ACTAGT 1 cut(s) 185
SphI GCATGC 1 cut(s) 447
Sse9I AATT 6 cut(s) 223, 342, 421, 755, 847, 878
SsiI CCGC 3 cut(s) 24, 127, 400
SspDI GGCGCC 1 cut(s) 333
SspMI CTAG 4 cut(s) 186, 494, 507, 971
StyD4I CCNGG 3 cut(s) 114, 166, 328
StyI CCWWGG 1 cut(s) 44
TaaI ACNGT 2 cut(s) 432, 656
TaqI TCGA 1 cut(s) 107
TasI AATT 6 cut(s) 223, 342, 421, 755, 847, 878
TatI WGTACW 1 cut(s) 57
TfiI GAWTC 1 cut(s) 912
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TscAI CASTG 2 cut(s) 661, 817
TseFI GTSAC 2 cut(s) 698, 977
TseI GCWGC 1 cut(s) 784
Tsp45I GTSAC 2 cut(s) 698, 977
TspDTI ATGAA 3 cut(s) 372, 871, 899
TspGWI ACGGA 2 cut(s) 824, 965
TspRI CASTG 2 cut(s) 661, 817
Tth111I GACNNNGTC 1 cut(s) 83
VpaK11BI GGWCC 3 cut(s) 161, 218, 550
XapI RAATTY 3 cut(s) 421, 755, 878
XbaI TCTAGA 1 cut(s) 506
XceI RCATGY 4 cut(s) 43, 142, 447, 722
XmiI GTMKAC 1 cut(s) 190
XmnI GAANNNNTTC 1 cut(s) 564
XspI CTAG 4 cut(s) 186, 494, 507, 971
Zsp2I ATGCAT 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.