pycom07g01540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000520
Physical Location & Seq
Forward (+)
1182216 .. 1192507
10292 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g01540.5

Sequence Viewer

Length: 609 bp
ATGCAATCTCTCTCTTTTCGTCCGAATGAAATCTCTCTCTCTCTCTCTCTCTCTCTTATTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGACAAAACCATGAGCCGCCGAGTAGCCGGACCAGGATCCGAATCCGGAAGCCCCAAATTCGCTCGCCTCTCTCGTTCTCTCTCAATCAAAACCATGGAGGACCGCCGACTCGAAGTCACCAGGTCCTATTTCAAGTCCGTCGGTCTCCGAGGAAGAAGAAGACTATCTATATGAAGAAAACGGCTGTTAAAGACTCTCCAACTCAACTCAAAAATGAAAATGTTGTTCAAGAGGGTATGGCTCAACTCCAACTTAACGAGGAGAATACTACTACACCAAAACCAGAAGAGAGGAAAATGCACAGAGCAGTCGTATTTACTAGACCTATCAAATTCACAATCCCTTGTAAAGTTTGCGGAGTGGTTGGCCACTTTAATGATGATTGCCCCTACATGATACGTGTTCCAAACAATGTAACTGAGGTTGGCAAGGGCTATGAAATAGTTACCTTCCGTGGTAAGAGGCATGCTGAAATTCCCCCCTCAACTCTCAAAATTAGTCAATTTGCACCCTACTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

23.03

Weight (kDa)

10.32

Isoelectric Point (pI)

57.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 132
AciI CCGC 3 cut(s) 104, 191, 444
AclWI GGATC 2 cut(s) 118, 131
AcoI YGGCCR 1 cut(s) 454
AcsI RAATTY 3 cut(s) 144, 419, 561
AflIII ACRYGT 1 cut(s) 487
AgsI TTSAA 2 cut(s) 221, 317
AhdI GACNNNNNGTC 1 cut(s) 201
AjnI CCWGG 2 cut(s) 119, 207
Alw26I GTCTC 1 cut(s) 237
AlwI GGATC 2 cut(s) 118, 131
Aor13HI TCCGGA 1 cut(s) 132
AoxI GGCC 1 cut(s) 454
ApoI RAATTY 3 cut(s) 144, 419, 561
AspS9I GGNCC 3 cut(s) 117, 188, 211
AsuHPI GGTGA 1 cut(s) 197
AvaII GGWCC 3 cut(s) 117, 188, 211
BalI TGGCCA 1 cut(s) 456
BamHI GGATCC 1 cut(s) 123
BbsI GAAGAC 1 cut(s) 254
BceAI ACGGC 1 cut(s) 285
BciT130I CCWGG 2 cut(s) 121, 209
BcoDI GTCTC 1 cut(s) 237
BfaI CTAG 1 cut(s) 408
BisI GCNGC 1 cut(s) 104
BlsI GCNGC 1 cut(s) 105
Bme1390I CCNGG 2 cut(s) 121, 209
Bme18I GGWCC 3 cut(s) 117, 188, 211
BmeRI GACNNNNNGTC 1 cut(s) 201
BmgT120I GGNCC 3 cut(s) 117, 188, 211
BmiI GGNNCC 1 cut(s) 125
BmrFI CCNGG 2 cut(s) 121, 209
BpiI GAAGAC 1 cut(s) 254
BsaAI YACGTR 1 cut(s) 488
BsaBI GATNNNNATC 1 cut(s) 128
BsaI GGTCTC 1 cut(s) 237
BsaJI CCNNGG 3 cut(s) 181, 236, 541
BsaWI WCCGGW 1 cut(s) 132
Bse8I GATNNNNATC 1 cut(s) 128
BseAI TCCGGA 1 cut(s) 132
BseBI CCWGG 2 cut(s) 121, 209
BseDI CCNNGG 3 cut(s) 181, 236, 541
BseJI GATNNNNATC 1 cut(s) 128
BseMII CTCAG 2 cut(s) 100, 498
BseRI GAGGAG 1 cut(s) 362
BshFI GGCC 1 cut(s) 456
BsiSI CCGG 2 cut(s) 115, 133
BsmAI GTCTC 1 cut(s) 237
BsnI GGCC 1 cut(s) 456
Bso31I GGTCTC 1 cut(s) 237
Bsp13I TCCGGA 1 cut(s) 132
Bsp143I GATC 1 cut(s) 123
Bsp19I CCATGG 1 cut(s) 181
BspACI CCGC 3 cut(s) 104, 191, 444
BspANI GGCC 1 cut(s) 456
BspCNI CTCAG 2 cut(s) 99, 499
BspEI TCCGGA 1 cut(s) 132
BspLI GGNNCC 1 cut(s) 125
BspPI GGATC 2 cut(s) 118, 131
BspTNI GGTCTC 1 cut(s) 237
BssECI CCNNGG 3 cut(s) 181, 236, 541
BssMI GATC 1 cut(s) 123
BssT1I CCWWGG 1 cut(s) 181
Bst2UI CCWGG 2 cut(s) 121, 209
Bst4CI ACNGT 1 cut(s) 605
Bst6I CTCTTC 1 cut(s) 369
BstBAI YACGTR 1 cut(s) 488
BstC8I GCNNGC 2 cut(s) 152, 555
BstDEI CTNAG 2 cut(s) 86, 507
BstDSI CCRYGG 2 cut(s) 181, 541
BstKTI GATC 1 cut(s) 126
BstMAI GTCTC 1 cut(s) 237
BstMBI GATC 1 cut(s) 123
BstNI CCWGG 2 cut(s) 121, 209
BstNSI RCATGY 1 cut(s) 557
BstSCI CCNGG 2 cut(s) 119, 207
BstV2I GAAGAC 1 cut(s) 254
BstX2I RGATCY 1 cut(s) 123
BstYI RGATCY 1 cut(s) 123
BsuRI GGCC 1 cut(s) 456
BtgI CCRYGG 2 cut(s) 181, 541
Cac8I GCNNGC 2 cut(s) 152, 555
Cfr13I GGNCC 3 cut(s) 117, 188, 211
CsiI ACCWGGT 1 cut(s) 207
CviAII CATG 4 cut(s) 98, 182, 481, 554
CviJI RGCY 7 cut(s) 103, 114, 139, 272, 329, 456, 522
CviKI_1 RGCY 7 cut(s) 103, 114, 139, 272, 329, 456, 522
DdeI CTNAG 2 cut(s) 86, 507
DpnI GATC 1 cut(s) 125
DpnII GATC 1 cut(s) 123
DriI GACNNNNNGTC 1 cut(s) 201
EaeI YGGCCR 1 cut(s) 454
Eam1104I CTCTTC 1 cut(s) 369
Eam1105I GACNNNNNGTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 369
Eco130I CCWWGG 1 cut(s) 181
Eco31I GGTCTC 1 cut(s) 237
Eco47I GGWCC 3 cut(s) 117, 188, 211
EcoO109I RGGNCCY 1 cut(s) 211
EcoRII CCWGG 2 cut(s) 119, 207
EcoT14I CCWWGG 1 cut(s) 181
ErhI CCWWGG 1 cut(s) 181
FaeI CATG 4 cut(s) 101, 185, 484, 557
FaiI YATR 8 cut(s) 99, 183, 258, 260, 326, 482, 525, 555
FatI CATG 4 cut(s) 97, 181, 480, 553
Fnu4HI GCNGC 1 cut(s) 104
Fsp4HI GCNGC 1 cut(s) 104
FspBI CTAG 1 cut(s) 408
GluI GCNGC 1 cut(s) 104
HaeIII GGCC 1 cut(s) 456
HapII CCGG 2 cut(s) 115, 133
Hin1II CATG 4 cut(s) 101, 185, 484, 557
HinfI GANTC 3 cut(s) 129, 196, 281
HpaII CCGG 2 cut(s) 115, 133
HphI GGTGA 1 cut(s) 197
Hpy188I TCNGA 4 cut(s) 24, 89, 128, 237
Hpy188III TCNNGA 2 cut(s) 133, 317
Hpy99I CGWCG 1 cut(s) 231
HpyAV CCTTC 1 cut(s) 547
HpyCH4III ACNGT 1 cut(s) 605
HpyCH4IV ACGT 1 cut(s) 487
HpyCH4V TGCA 3 cut(s) 4, 388, 596
HpyF3I CTNAG 2 cut(s) 86, 507
HpySE526I ACGT 1 cut(s) 487
Hsp92II CATG 4 cut(s) 101, 185, 484, 557
Kpn2I TCCGGA 1 cut(s) 132
Kzo9I GATC 1 cut(s) 123
LpnPI CCDG 7 cut(s) 106, 128, 133, 146, 194, 221, 384
MabI ACCWGGT 1 cut(s) 207
MaeI CTAG 1 cut(s) 408
MaeII ACGT 1 cut(s) 487
MaeIII GTNAC 3 cut(s) 203, 502, 532
MalI GATC 1 cut(s) 125
MboI GATC 1 cut(s) 123
MboII GAAGA 5 cut(s) 253, 256, 259, 274, 386
MflI RGATCY 1 cut(s) 123
MlsI TGGCCA 1 cut(s) 456
MluCI AATT 5 cut(s) 144, 419, 561, 582, 590
MluNI TGGCCA 1 cut(s) 456
MlyI GAGTC 2 cut(s) 190, 275
MmeI TCCRAC 2 cut(s) 311, 361
MnlI CCTC 9 cut(s) 165, 179, 231, 313, 340, 372, 502, 543, 580
Mox20I TGGCCA 1 cut(s) 456
MroI TCCGGA 1 cut(s) 132
MscI TGGCCA 1 cut(s) 456
MseI TTAA 4 cut(s) 276, 342, 462, 607
MslI CAYNNNNRTG 1 cut(s) 462
Msp20I TGGCCA 1 cut(s) 456
MspI CCGG 2 cut(s) 115, 133
MspR9I CCNGG 2 cut(s) 121, 209
MvaI CCWGG 2 cut(s) 121, 209
NcoI CCATGG 1 cut(s) 181
NdeII GATC 1 cut(s) 123
NlaIII CATG 4 cut(s) 101, 185, 484, 557
NlaIV GGNNCC 1 cut(s) 125
NmeAIII GCCGAG 1 cut(s) 132
NmuCI GTSAC 1 cut(s) 203
NspI RCATGY 1 cut(s) 557
PaeI GCATGC 1 cut(s) 557
PcsI WCGNNNNNNNCGW 1 cut(s) 158
PfeI GAWTC 1 cut(s) 129
PkrI GCNGC 1 cut(s) 105
PleI GAGTC 2 cut(s) 190, 275
PpsI GAGTC 2 cut(s) 190, 275
Ppu21I YACGTR 1 cut(s) 488
PpuMI RGGWCCY 1 cut(s) 211
Psp5II RGGWCCY 1 cut(s) 211
Psp6I CCWGG 2 cut(s) 119, 207
PspGI CCWGG 2 cut(s) 119, 207
PspN4I GGNNCC 1 cut(s) 125
PspPI GGNCC 3 cut(s) 117, 188, 211
PspPPI RGGWCCY 1 cut(s) 211
PsuI RGATCY 1 cut(s) 123
RseI CAYNNNNRTG 1 cut(s) 462
SaqAI TTAA 4 cut(s) 276, 342, 462, 607
SatI GCNGC 1 cut(s) 104
Sau3AI GATC 1 cut(s) 123
Sau96I GGNCC 3 cut(s) 117, 188, 211
SchI GAGTC 2 cut(s) 190, 275
ScrFI CCNGG 2 cut(s) 121, 209
SetI ASST 5 cut(s) 213, 415, 490, 513, 539
SexAI ACCWGGT 1 cut(s) 207
SinI GGWCC 3 cut(s) 117, 188, 211
SmiMI CAYNNNNRTG 1 cut(s) 462
SphI GCATGC 1 cut(s) 557
Sse9I AATT 5 cut(s) 144, 419, 561, 582, 590
SsiI CCGC 3 cut(s) 104, 191, 444
SspMI CTAG 1 cut(s) 408
StyD4I CCNGG 2 cut(s) 119, 207
StyI CCWWGG 1 cut(s) 181
TaaI ACNGT 1 cut(s) 605
TaiI ACGT 1 cut(s) 490
TaqI TCGA 1 cut(s) 199
TaqII GACCGA 1 cut(s) 219
TasI AATT 5 cut(s) 144, 419, 561, 582, 590
TauI GCSGC 1 cut(s) 106
TfiI GAWTC 1 cut(s) 129
Tru1I TTAA 4 cut(s) 276, 342, 462, 607
Tru9I TTAA 4 cut(s) 276, 342, 462, 607
TseFI GTSAC 1 cut(s) 203
Tsp45I GTSAC 1 cut(s) 203
TspDTI ATGAA 4 cut(s) 42, 275, 318, 540
TspGWI ACGGA 2 cut(s) 215, 530
VpaK11BI GGWCC 3 cut(s) 117, 188, 211
XapI RAATTY 3 cut(s) 144, 419, 561
XceI RCATGY 1 cut(s) 557
XspI CTAG 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.