MD08G1234000.v1.1

Tumour-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0000520
Physical Location & Seq
Reverse (-)
30059687 .. 30062055
2369 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1234000.v1.1.491

Sequence Viewer

Length: 561 bp
ATGACAAAAACCATGTACCGCCGAACCAAAGGCACATCGAAGGCGAAGGATAAGTCCAAGTCACTCGCCGGACAAGGATTCGGGAAGGGGAAGAACCCAATTCCAACCCAATCGACGAAGCTCCGAGAGAAGAAGAAAGAAAAAAAGGCGGTTGTTAAAGACTCTCCGACGATTCACCTCAAGAATGTAAAGGCTGCTGCAGACTTACTGGCTCAAATCCAACTAGAGGAGAAGAGTACTAGCCCAGCTTTGTTCAAGGAGGACAAAATTCCCAAATGCATAGTCGAGCCACGCATAGTTTCCGAATTGCCATCTAGTTGTCCAATATGCACTAAGTTGGGCCACGCTCCTGAACACTGTCCATGGAGGAGACGTCTCCCCTTCGGCGTAACTCAAGTTGGCAAGGGCTATGAAATATACGGGCGGCGTGTTAATATCCTTTGGTGTTCCTTTTGTGATGAGATTGGTCACAGGACTTCAGAATGCCCGGAGCCGAACAAAAAGATCGAAAAAACTAGATTATGGGAAGAGTTCTTCTTCCCTGAAGATAAGGACAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Membralin

Protein Analysis

187

Amino Acids

21.17

Weight (kDa)

9.59

Isoelectric Point (pI)

60.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 376
AciI CCGC 3 cut(s) 19, 149, 424
AcsI RAATTY 1 cut(s) 267
AcuI CTGAAG 1 cut(s) 462
AcyI GRCGYC 1 cut(s) 373
AfaI GTAC 2 cut(s) 17, 238
AfiI CCNNNNNNNGG 1 cut(s) 226
AgsI TTSAA 1 cut(s) 256
AluBI AGCT 2 cut(s) 121, 248
AluI AGCT 2 cut(s) 121, 248
Alw26I GTCTC 2 cut(s) 364, 380
AoxI GGCC 1 cut(s) 340
ApeKI GCWGC 2 cut(s) 194, 197
ApoI RAATTY 1 cut(s) 267
ArsI GACNNNNNNTTYG 4 cut(s) 38, 70, 267, 299
AspS9I GGNCC 1 cut(s) 340
AsuC2I CCSGG 1 cut(s) 488
AsuHPI GGTGA 1 cut(s) 167
BbvI GCAGC 2 cut(s) 181, 184
BccI CCATC 1 cut(s) 319
BcnI CCSGG 1 cut(s) 488
BcoDI GTCTC 2 cut(s) 364, 380
BfaI CTAG 4 cut(s) 224, 240, 315, 516
BfmI CTRYAG 1 cut(s) 198
BisI GCNGC 3 cut(s) 195, 198, 425
BlsI GCNGC 3 cut(s) 196, 199, 426
BmcAI AGTACT 1 cut(s) 238
Bme1390I CCNGG 1 cut(s) 488
BmgT120I GGNCC 1 cut(s) 340
BmiI GGNNCC 1 cut(s) 492
BmrFI CCNGG 1 cut(s) 488
BpuEI CTTGAG 2 cut(s) 164, 378
BpuMI CCSGG 1 cut(s) 488
BsaHI GRCGYC 1 cut(s) 373
BsaJI CCNNGG 1 cut(s) 362
BsaXI ACNNNNNCTCC 2 cut(s) 358, 388
Bsc4I CCNNNNNNNGG 1 cut(s) 226
Bse1I ACTGG 1 cut(s) 213
BseDI CCNNGG 1 cut(s) 362
BseLI CCNNNNNNNGG 1 cut(s) 226
BseNI ACTGG 1 cut(s) 213
BseRI GAGGAG 2 cut(s) 242, 382
BseXI GCAGC 2 cut(s) 181, 184
BseYI CCCAGC 1 cut(s) 244
BshFI GGCC 1 cut(s) 342
BsiSI CCGG 2 cut(s) 69, 488
BslI CCNNNNNNNGG 1 cut(s) 226
BsmAI GTCTC 2 cut(s) 364, 380
BsmBI CGTCTC 2 cut(s) 364, 380
BsmI GAATGC 1 cut(s) 488
BsnI GGCC 1 cut(s) 342
Bsp143I GATC 1 cut(s) 504
Bsp19I CCATGG 1 cut(s) 362
BspACI CCGC 3 cut(s) 19, 149, 424
BspANI GGCC 1 cut(s) 342
BspLI GGNNCC 1 cut(s) 492
BspMAI CTGCAG 1 cut(s) 202
BsrI ACTGG 1 cut(s) 213
BssECI CCNNGG 1 cut(s) 362
BssMI GATC 1 cut(s) 504
BssNI GRCGYC 1 cut(s) 373
BssT1I CCWWGG 1 cut(s) 362
Bst4CI ACNGT 1 cut(s) 359
Bst6I CTCTTC 2 cut(s) 227, 522
BstACI GRCGYC 1 cut(s) 373
BstDEI CTNAG 1 cut(s) 333
BstDSI CCRYGG 1 cut(s) 362
BstKTI GATC 1 cut(s) 507
BstMAI GTCTC 2 cut(s) 364, 380
BstMBI GATC 1 cut(s) 504
BstSCI CCNGG 1 cut(s) 486
BstSFI CTRYAG 1 cut(s) 198
BstV1I GCAGC 2 cut(s) 181, 184
BsuRI GGCC 1 cut(s) 342
BtgI CCRYGG 1 cut(s) 362
BtsIMutI CAGTG 1 cut(s) 355
Cfr13I GGNCC 1 cut(s) 340
Csp6I GTAC 2 cut(s) 16, 237
CviAII CATG 2 cut(s) 13, 363
CviJI RGCY 9 cut(s) 121, 194, 212, 243, 248, 289, 342, 408, 493
CviKI_1 RGCY 9 cut(s) 121, 194, 212, 243, 248, 289, 342, 408, 493
CviQI GTAC 2 cut(s) 16, 237
DdeI CTNAG 1 cut(s) 333
DpnI GATC 1 cut(s) 506
DpnII GATC 1 cut(s) 504
Eam1104I CTCTTC 2 cut(s) 227, 522
EarI CTCTTC 2 cut(s) 227, 522
Eco130I CCWWGG 1 cut(s) 362
Eco57I CTGAAG 1 cut(s) 462
EcoT14I CCWWGG 1 cut(s) 362
EcoT22I ATGCAT 1 cut(s) 281
ErhI CCWWGG 1 cut(s) 362
Esp3I CGTCTC 2 cut(s) 364, 380
FaeI CATG 2 cut(s) 16, 366
FaiI YATR 8 cut(s) 14, 281, 296, 328, 364, 411, 418, 523
FatI CATG 2 cut(s) 12, 362
Fnu4HI GCNGC 3 cut(s) 195, 198, 425
Fsp4HI GCNGC 3 cut(s) 195, 198, 425
FspBI CTAG 4 cut(s) 224, 240, 315, 516
GluI GCNGC 3 cut(s) 195, 198, 425
GsaI CCCAGC 1 cut(s) 248
HaeIII GGCC 1 cut(s) 342
HapII CCGG 2 cut(s) 69, 488
Hin1I GRCGYC 1 cut(s) 373
Hin1II CATG 2 cut(s) 16, 366
HinfI GANTC 3 cut(s) 78, 161, 172
HpaII CCGG 2 cut(s) 69, 488
HphI GGTGA 1 cut(s) 167
Hpy188I TCNGA 4 cut(s) 125, 168, 304, 481
Hpy188III TCNNGA 3 cut(s) 82, 181, 350
Hpy99I CGWCG 2 cut(s) 118, 172
HpyAV CCTTC 4 cut(s) 34, 40, 79, 391
HpyCH4III ACNGT 1 cut(s) 359
HpyCH4IV ACGT 1 cut(s) 373
HpyCH4V TGCA 3 cut(s) 200, 279, 330
HpyF3I CTNAG 1 cut(s) 333
HpySE526I ACGT 1 cut(s) 373
Hsp92I GRCGYC 1 cut(s) 373
Hsp92II CATG 2 cut(s) 16, 366
Kzo9I GATC 1 cut(s) 504
LmnI GCTCC 3 cut(s) 126, 352, 490
LpnPI CCDG 7 cut(s) 82, 194, 258, 363, 457, 501, 555
Lsp1109I GCAGC 2 cut(s) 181, 184
MaeI CTAG 4 cut(s) 224, 240, 315, 516
MaeII ACGT 1 cut(s) 373
MaeIII GTNAC 3 cut(s) 60, 388, 467
MalI GATC 1 cut(s) 506
MboI GATC 1 cut(s) 504
MboII GAAGA 8 cut(s) 103, 142, 145, 244, 526, 529, 539, 557
MluCI AATT 4 cut(s) 99, 267, 305, 556
MlyI GAGTC 1 cut(s) 155
MmeI TCCRAC 3 cut(s) 128, 191, 244
MnlI CCTC 4 cut(s) 188, 220, 253, 360
Mph1103I ATGCAT 1 cut(s) 281
MseI TTAA 2 cut(s) 156, 432
MspI CCGG 2 cut(s) 69, 488
MspR9I CCNGG 1 cut(s) 488
Mva1269I GAATGC 1 cut(s) 488
NciI CCSGG 1 cut(s) 488
NcoI CCATGG 1 cut(s) 362
NdeII GATC 1 cut(s) 504
NlaIII CATG 2 cut(s) 16, 366
NlaIV GGNNCC 1 cut(s) 492
NmuCI GTSAC 2 cut(s) 60, 467
NsiI ATGCAT 1 cut(s) 281
PctI GAATGC 1 cut(s) 488
PfeI GAWTC 2 cut(s) 78, 172
PkrI GCNGC 3 cut(s) 196, 199, 426
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
PspFI CCCAGC 1 cut(s) 244
PspN4I GGNNCC 1 cut(s) 492
PspPI GGNCC 1 cut(s) 340
PstI CTGCAG 1 cut(s) 202
RsaI GTAC 2 cut(s) 17, 238
RsaNI GTAC 2 cut(s) 16, 237
SaqAI TTAA 2 cut(s) 156, 432
SatI GCNGC 3 cut(s) 195, 198, 425
Sau3AI GATC 1 cut(s) 504
Sau96I GGNCC 1 cut(s) 340
ScaI AGTACT 1 cut(s) 238
SchI GAGTC 1 cut(s) 155
ScrFI CCNGG 1 cut(s) 488
SetI ASST 4 cut(s) 123, 180, 250, 376
SfcI CTRYAG 1 cut(s) 198
SmlI CTYRAG 2 cut(s) 179, 393
SmoI CTYRAG 2 cut(s) 179, 393
Sse9I AATT 4 cut(s) 99, 267, 305, 556
SsiI CCGC 3 cut(s) 19, 149, 424
SspMI CTAG 4 cut(s) 224, 240, 315, 516
StyD4I CCNGG 1 cut(s) 486
StyI CCWWGG 1 cut(s) 362
TaaI ACNGT 1 cut(s) 359
TaiI ACGT 1 cut(s) 376
TaqI TCGA 4 cut(s) 38, 113, 285, 507
TasI AATT 4 cut(s) 99, 267, 305, 556
TatI WGTACW 1 cut(s) 236
TauI GCSGC 1 cut(s) 427
TfiI GAWTC 2 cut(s) 78, 172
Tru1I TTAA 2 cut(s) 156, 432
Tru9I TTAA 2 cut(s) 156, 432
TscAI CASTG 1 cut(s) 362
TseFI GTSAC 2 cut(s) 60, 467
TseI GCWGC 2 cut(s) 194, 197
Tsp45I GTSAC 2 cut(s) 60, 467
TspDTI ATGAA 1 cut(s) 426
TspRI CASTG 1 cut(s) 362
XapI RAATTY 1 cut(s) 267
XspI CTAG 4 cut(s) 224, 240, 315, 516
ZraI GACGTC 1 cut(s) 374
ZrmI AGTACT 1 cut(s) 238
Zsp2I ATGCAT 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.