pycom08g17170

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0000520
Physical Location & Seq
Reverse (-)
17331409 .. 17332364
956 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g17170.1

Sequence Viewer

Length: 699 bp
ATGTCCTCCTCCGGACCCCCAGCCAGTGATCCCTCATCTGAGGGCAAGCTCCCAGAATCCGTCTCATCAGACGAAGCCATGAACTGCCGAACCCCAGACAGTGATGAGGCTTTGGAAATCTTCGTTTGGAACGGCCGACCCTCAGCCAGTAAACCCCCATGTGAGACCAAGCTCCGACAAAACGTCGATTGGAACAGCCGACCCGGAGCCAGTGATCGCCTGTCCGTGGCCAAGTTCTCAGATGACCTCGTCTTCGATTGGTATAATCGAGGCCAACCGAAGGAACGAGGTGAGATCCGGACTCCTCTTGAGAAGCATACAGAAGCACTCCATCTTCGAAAACCAGGATGCCTCAAACTTGTGGAGGAGGATACAACTCCAGCTTCTTCGGAGGAGAGAGTTTCAAGCTGTCCAGAGGATACAACTCCACCTTCTTCAGAGGAGAGAATTCCAATCTGTCGAGAGGATACAACTCCAGCTTCTTCCGAGGAGAGAATTTCAAGCTGTCCAGAGGATACAACTCCAATCTGTCCAGGGGATACAACTCCAATCTTTCCAGAGGAGAGAATTCCAATCTGTCGAGCGGATACTACTCCAACCTGCCCAATTTGTATTCATGGTCGCCACTGGATGTCATTCTGCCCCTACTTGCGTCGTGTCCCGGATGACGTAACTAATATTGGCGAGGTGTGGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

25.79

Weight (kDa)

4.73

Isoelectric Point (pI)

60.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 608
AccBSI CCGCTC 1 cut(s) 584
AccIII TCCGGA 2 cut(s) 11, 297
AciI CCGC 1 cut(s) 584
AclWI GGATC 2 cut(s) 23, 289
AcoI YGGCCR 2 cut(s) 133, 228
AcsI RAATTY 3 cut(s) 447, 495, 567
AcuI CTGAAG 1 cut(s) 420
AfiI CCNNNNNNNGG 2 cut(s) 226, 280
AgsI TTSAA 2 cut(s) 405, 501
AhdI GACNNNNNGTC 1 cut(s) 182
AjnI CCWGG 2 cut(s) 343, 532
AluBI AGCT 6 cut(s) 49, 172, 383, 408, 479, 504
AluI AGCT 6 cut(s) 49, 172, 383, 408, 479, 504
Alw26I GTCTC 2 cut(s) 67, 158
AlwI GGATC 2 cut(s) 23, 289
Aor13HI TCCGGA 2 cut(s) 11, 297
AoxI GGCC 3 cut(s) 133, 228, 271
ApoI RAATTY 3 cut(s) 447, 495, 567
ArsI GACNNNNNNTTYG 2 cut(s) 236, 268
AspS9I GGNCC 1 cut(s) 14
AsuC2I CCSGG 2 cut(s) 204, 662
AsuHPI GGTGA 1 cut(s) 302
AsuII TTCGAA 1 cut(s) 337
AvaII GGWCC 1 cut(s) 14
BalI TGGCCA 1 cut(s) 230
BbsI GAAGAC 1 cut(s) 244
BbvCI CCTCAGC 1 cut(s) 142
BccI CCATC 1 cut(s) 339
BceAI ACGGC 1 cut(s) 148
BciT130I CCWGG 2 cut(s) 345, 534
BciVI GTATCC 6 cut(s) 364, 412, 460, 508, 532, 580
BcnI CCSGG 2 cut(s) 204, 662
BcoDI GTCTC 2 cut(s) 67, 158
BfuAI ACCTGC 1 cut(s) 608
BfuI GTATCC 6 cut(s) 364, 412, 460, 508, 532, 580
Bme1390I CCNGG 4 cut(s) 204, 345, 534, 662
Bme18I GGWCC 1 cut(s) 14
BmeRI GACNNNNNGTC 1 cut(s) 182
BmgT120I GGNCC 1 cut(s) 14
BmiI GGNNCC 2 cut(s) 16, 208
BmrFI CCNGG 4 cut(s) 204, 345, 534, 662
BmsI GCATC 1 cut(s) 338
BpiI GAAGAC 1 cut(s) 244
BpmI CTGGAG 2 cut(s) 363, 459
Bpu10I CCTNAGC 1 cut(s) 142
Bpu14I TTCGAA 1 cut(s) 337
BpuEI CTTGAG 1 cut(s) 329
BpuMI CCSGG 2 cut(s) 204, 662
BsaI GGTCTC 1 cut(s) 158
BsaJI CCNNGG 3 cut(s) 225, 486, 533
BsaWI WCCGGW 2 cut(s) 11, 297
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 280
Bse1I ACTGG 4 cut(s) 24, 147, 210, 632
BseAI TCCGGA 2 cut(s) 11, 297
BseBI CCWGG 2 cut(s) 345, 534
BseDI CCNNGG 3 cut(s) 225, 486, 533
BseGI GGATG 3 cut(s) 353, 636, 670
BseLI CCNNNNNNNGG 2 cut(s) 226, 280
BseMII CTCAG 3 cut(s) 30, 156, 252
BseNI ACTGG 4 cut(s) 24, 147, 210, 632
BseRI GAGGAG 6 cut(s) 294, 380, 407, 455, 503, 575
BseX3I CGGCCG 1 cut(s) 133
BseYI CCCAGC 1 cut(s) 19
Bsh1285I CGRYCG 1 cut(s) 136
BshFI GGCC 3 cut(s) 135, 230, 273
BsiEI CGRYCG 1 cut(s) 136
BsiSI CCGG 4 cut(s) 12, 204, 298, 662
BslFI GGGAC 1 cut(s) 644
BslI CCNNNNNNNGG 2 cut(s) 226, 280
BsmAI GTCTC 2 cut(s) 67, 158
BsmBI CGTCTC 1 cut(s) 67
BsmFI GGGAC 1 cut(s) 644
BsnI GGCC 3 cut(s) 135, 230, 273
Bso31I GGTCTC 1 cut(s) 158
Bsp119I TTCGAA 1 cut(s) 337
Bsp13I TCCGGA 2 cut(s) 11, 297
Bsp143I GATC 3 cut(s) 28, 214, 294
BspACI CCGC 1 cut(s) 584
BspANI GGCC 3 cut(s) 135, 230, 273
BspCNI CTCAG 3 cut(s) 31, 155, 251
BspEI TCCGGA 2 cut(s) 11, 297
BspLI GGNNCC 2 cut(s) 16, 208
BspMI ACCTGC 1 cut(s) 608
BspPI GGATC 2 cut(s) 23, 289
BspT104I TTCGAA 1 cut(s) 337
BspTNI GGTCTC 1 cut(s) 158
BsrBI CCGCTC 1 cut(s) 584
BsrI ACTGG 4 cut(s) 24, 147, 210, 632
BssECI CCNNGG 3 cut(s) 225, 486, 533
BssMI GATC 3 cut(s) 28, 214, 294
Bst2UI CCWGG 2 cut(s) 345, 534
Bst4CI ACNGT 1 cut(s) 101
BstBI TTCGAA 1 cut(s) 337
BstC8I GCNNGC 1 cut(s) 47
BstDEI CTNAG 3 cut(s) 39, 142, 238
BstDSI CCRYGG 1 cut(s) 225
BstF5I GGATG 3 cut(s) 353, 636, 670
BstKTI GATC 3 cut(s) 31, 217, 297
BstMAI GTCTC 2 cut(s) 67, 158
BstMBI GATC 3 cut(s) 28, 214, 294
BstMCI CGRYCG 1 cut(s) 136
BstNI CCWGG 2 cut(s) 345, 534
BstSCI CCNGG 4 cut(s) 202, 343, 532, 660
BstV2I GAAGAC 1 cut(s) 244
BstX2I RGATCY 1 cut(s) 294
BstYI RGATCY 1 cut(s) 294
BstZI CGGCCG 1 cut(s) 133
BsuI GTATCC 6 cut(s) 364, 412, 460, 508, 532, 580
BsuRI GGCC 3 cut(s) 135, 230, 273
BtgI CCRYGG 1 cut(s) 225
BtsCI GGATG 3 cut(s) 353, 636, 670
BtsIMutI CAGTG 4 cut(s) 31, 106, 217, 625
BveI ACCTGC 1 cut(s) 608
Cac8I GCNNGC 1 cut(s) 47
Cfr13I GGNCC 1 cut(s) 14
CseI GACGC 1 cut(s) 641
CviAII CATG 3 cut(s) 79, 159, 617
DdeI CTNAG 3 cut(s) 39, 142, 238
DpnI GATC 3 cut(s) 30, 216, 296
DpnII GATC 3 cut(s) 28, 214, 294
DriI GACNNNNNGTC 1 cut(s) 182
EaeI YGGCCR 2 cut(s) 133, 228
EagI CGGCCG 1 cut(s) 133
Eam1105I GACNNNNNGTC 1 cut(s) 182
EclXI CGGCCG 1 cut(s) 133
Eco31I GGTCTC 1 cut(s) 158
Eco47I GGWCC 1 cut(s) 14
Eco52I CGGCCG 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 420
EcoRI GAATTC 2 cut(s) 447, 567
EcoRII CCWGG 2 cut(s) 343, 532
Esp3I CGTCTC 1 cut(s) 67
FaeI CATG 3 cut(s) 82, 162, 620
FaiI YATR 6 cut(s) 80, 160, 264, 318, 618, 697
FaqI GGGAC 1 cut(s) 644
FatI CATG 3 cut(s) 78, 158, 616
FokI GGATG 3 cut(s) 360, 643, 677
GsaI CCCAGC 1 cut(s) 23
GsuI CTGGAG 2 cut(s) 363, 459
HaeIII GGCC 3 cut(s) 135, 230, 273
HapII CCGG 4 cut(s) 12, 204, 298, 662
HgaI GACGC 1 cut(s) 641
Hin1II CATG 3 cut(s) 82, 162, 620
HinfI GANTC 2 cut(s) 56, 301
HpaII CCGG 4 cut(s) 12, 204, 298, 662
HphI GGTGA 1 cut(s) 302
Hpy166II GTNNAC 2 cut(s) 152, 693
Hpy188I TCNGA 7 cut(s) 40, 70, 176, 241, 391, 439, 487
Hpy188III TCNNGA 7 cut(s) 12, 298, 308, 413, 461, 509, 557
Hpy8I GTNNAC 2 cut(s) 152, 693
Hpy99I CGWCG 2 cut(s) 188, 657
HpyAV CCTTC 2 cut(s) 274, 441
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4IV ACGT 2 cut(s) 183, 669
HpyF3I CTNAG 3 cut(s) 39, 142, 238
HpySE526I ACGT 2 cut(s) 183, 669
Hsp92II CATG 3 cut(s) 82, 162, 620
Kpn2I TCCGGA 2 cut(s) 11, 297
Kzo9I GATC 3 cut(s) 28, 214, 294
LmnI GCTCC 3 cut(s) 54, 177, 206
LweI GCATC 1 cut(s) 338
MaeII ACGT 2 cut(s) 183, 669
MaeIII GTNAC 1 cut(s) 670
MalI GATC 3 cut(s) 30, 216, 296
MbiI CCGCTC 1 cut(s) 584
MboI GATC 3 cut(s) 28, 214, 294
MboII GAAGA 6 cut(s) 112, 244, 326, 378, 426, 474
MflI RGATCY 1 cut(s) 294
MlsI TGGCCA 1 cut(s) 230
MluCI AATT 4 cut(s) 447, 495, 567, 606
MluNI TGGCCA 1 cut(s) 230
MlyI GAGTC 1 cut(s) 295
MmeI TCCRAC 2 cut(s) 199, 620
Mox20I TGGCCA 1 cut(s) 230
MroI TCCGGA 2 cut(s) 11, 297
MscI TGGCCA 1 cut(s) 230
Msp20I TGGCCA 1 cut(s) 230
MspI CCGG 4 cut(s) 12, 204, 298, 662
MspR9I CCNGG 4 cut(s) 204, 345, 534, 662
MvaI CCWGG 2 cut(s) 345, 534
NciI CCSGG 2 cut(s) 204, 662
NdeII GATC 3 cut(s) 28, 214, 294
NlaIII CATG 3 cut(s) 82, 162, 620
NlaIV GGNNCC 2 cut(s) 16, 208
NspV TTCGAA 1 cut(s) 337
PfeI GAWTC 1 cut(s) 56
PflFI GACNNNGTC 1 cut(s) 248
PfoI TCCNGGA 1 cut(s) 660
PleI GAGTC 1 cut(s) 295
PpsI GAGTC 1 cut(s) 295
Psp6I CCWGG 2 cut(s) 343, 532
PspFI CCCAGC 1 cut(s) 19
PspGI CCWGG 2 cut(s) 343, 532
PspN4I GGNNCC 2 cut(s) 16, 208
PspPI GGNCC 1 cut(s) 14
PsuI RGATCY 1 cut(s) 294
PsyI GACNNNGTC 1 cut(s) 248
Sau3AI GATC 3 cut(s) 28, 214, 294
Sau96I GGNCC 1 cut(s) 14
SchI GAGTC 1 cut(s) 295
ScrFI CCNGG 4 cut(s) 204, 345, 534, 662
SfaNI GCATC 1 cut(s) 338
SfuI TTCGAA 1 cut(s) 337
SinI GGWCC 1 cut(s) 14
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
Sse9I AATT 4 cut(s) 447, 495, 567, 606
SsiI CCGC 1 cut(s) 584
SspI AATATT 1 cut(s) 679
StyD4I CCNGG 4 cut(s) 202, 343, 532, 660
TaaI ACNGT 1 cut(s) 101
TaiI ACGT 2 cut(s) 186, 672
TaqI TCGA 6 cut(s) 186, 255, 268, 337, 460, 580
TasI AATT 4 cut(s) 447, 495, 567, 606
TfiI GAWTC 1 cut(s) 56
TscAI CASTG 4 cut(s) 31, 106, 217, 632
TspDTI ATGAA 2 cut(s) 95, 605
TspGWI ACGGA 2 cut(s) 49, 214
TspRI CASTG 4 cut(s) 31, 106, 217, 632
Tth111I GACNNNGTC 1 cut(s) 248
VpaK11BI GGWCC 1 cut(s) 14
XapI RAATTY 3 cut(s) 447, 495, 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.