MD02G1305800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0000520
Physical Location & Seq
Reverse (-)
35890988 .. 35892969
1982 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1305800.v1.1.491

Sequence Viewer

Length: 543 bp
ATGAACCCCCGATCAAGGGCGATAGCCAACGCTAAGGCCAGGGCTAAGGCCAAGTCCAAGTCCCTAGCCGGACCAGGATCCGGATCCCGGCAGGAGAAGATTCCAGGCCAACGGACGAAGCTAGGAGATGGCCCCTCCTCTCAACTCAAAAATGAAAAGGCTGTTGAAGAGAATCTGGCTAAAGTCCAACTTGACGAGGAGAATACTACTACTCCAAAACCAAAACCAGAAGAGAAGAAAATGAGCAGGGCATTCACAGCTGAGAAACCTTTCAGATTCCAATTCAAACACCCTTGCGAAGTTTGCAATGTGTTTGGCCACTGGAGTGATAAATGCCCCTACCTGAAACGTATACCAGACAATGTAACTGAGGTTGGCAAGGGCTACAGAATATTGGATGGCCGGGGGCTGAGGTATGCTGATATGATGTGCTGTCTTCTTTGTGGCAAATTTCGTGACCACGAGGATGAGGACTGCCCGGATTTAAGCAAATTCATTGCAGAAGGCCACCCCCTTCTCAACCGAGTTCCTCGCAGCCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

20.2

Weight (kDa)

9.34

Isoelectric Point (pI)

36.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 352
AccIII TCCGGA 1 cut(s) 80
AclWI GGATC 4 cut(s) 72, 78, 85, 91
AcoI YGGCCR 2 cut(s) 316, 400
AcsI RAATTY 2 cut(s) 449, 491
AfiI CCNNNNNNNGG 4 cut(s) 15, 16, 80, 87
AgsI TTSAA 2 cut(s) 167, 286
AjnI CCWGG 3 cut(s) 38, 73, 103
AleI CACNNNNGTG 1 cut(s) 324
AluBI AGCT 2 cut(s) 121, 260
AluI AGCT 2 cut(s) 121, 260
AlwI GGATC 4 cut(s) 72, 78, 85, 91
Aor13HI TCCGGA 1 cut(s) 80
AoxI GGCC 7 cut(s) 36, 48, 106, 130, 316, 400, 505
ApeKI GCWGC 1 cut(s) 534
ApoI RAATTY 2 cut(s) 449, 491
Asp700I GAANNNNTTC 1 cut(s) 269
AspS9I GGNCC 2 cut(s) 71, 131
AsuC2I CCSGG 3 cut(s) 88, 404, 479
AvaII GGWCC 1 cut(s) 71
BalI TGGCCA 1 cut(s) 318
BamHI GGATCC 2 cut(s) 77, 83
BauI CACGAG 1 cut(s) 461
BbsI GAAGAC 1 cut(s) 428
BbvCI CCTCAGC 1 cut(s) 410
BccI CCATC 2 cut(s) 122, 392
BciT130I CCWGG 3 cut(s) 40, 75, 105
BcnI CCSGG 3 cut(s) 88, 404, 479
BfaI CTAG 2 cut(s) 65, 122
BfmI CTRYAG 1 cut(s) 385
BisI GCNGC 1 cut(s) 535
BlsI GCNGC 1 cut(s) 536
Bme1390I CCNGG 6 cut(s) 40, 75, 88, 105, 404, 479
Bme18I GGWCC 1 cut(s) 71
BmgT120I GGNCC 2 cut(s) 71, 131
BmiI GGNNCC 3 cut(s) 79, 85, 133
BmrFI CCNGG 6 cut(s) 40, 75, 88, 105, 404, 479
BpiI GAAGAC 1 cut(s) 428
BpmI CTGGAG 1 cut(s) 343
Bpu10I CCTNAGC 3 cut(s) 33, 45, 410
BpuMI CCSGG 3 cut(s) 88, 404, 479
BsaBI GATNNNNATC 1 cut(s) 82
BsaJI CCNNGG 2 cut(s) 39, 403
BsaWI WCCGGW 1 cut(s) 80
BsaXI ACNNNNNCTCC 2 cut(s) 196, 226
Bsc4I CCNNNNNNNGG 4 cut(s) 15, 16, 80, 87
Bse1I ACTGG 1 cut(s) 326
Bse3DI GCAATG 2 cut(s) 313, 495
Bse8I GATNNNNATC 1 cut(s) 82
BseAI TCCGGA 1 cut(s) 80
BseBI CCWGG 3 cut(s) 40, 75, 105
BseDI CCNNGG 2 cut(s) 39, 403
BseGI GGATG 2 cut(s) 403, 472
BseJI GATNNNNATC 1 cut(s) 82
BseLI CCNNNNNNNGG 4 cut(s) 15, 16, 80, 87
BseMI GCAATG 2 cut(s) 313, 495
BseMII CTCAG 3 cut(s) 252, 360, 401
BseNI ACTGG 1 cut(s) 326
BseRI GAGGAG 2 cut(s) 127, 212
BshFI GGCC 7 cut(s) 38, 50, 108, 132, 318, 402, 507
BsiSI CCGG 5 cut(s) 69, 81, 88, 403, 479
BslFI GGGAC 1 cut(s) 46
BslI CCNNNNNNNGG 4 cut(s) 15, 16, 80, 87
BsmFI GGGAC 1 cut(s) 46
BsmI GAATGC 1 cut(s) 251
BsnI GGCC 7 cut(s) 38, 50, 108, 132, 318, 402, 507
Bsp13I TCCGGA 1 cut(s) 80
Bsp143I GATC 3 cut(s) 11, 77, 83
BspANI GGCC 7 cut(s) 38, 50, 108, 132, 318, 402, 507
BspCNI CTCAG 3 cut(s) 253, 361, 402
BspEI TCCGGA 1 cut(s) 80
BspLI GGNNCC 3 cut(s) 79, 85, 133
BspPI GGATC 4 cut(s) 72, 78, 85, 91
BsrDI GCAATG 2 cut(s) 313, 495
BsrI ACTGG 1 cut(s) 326
BssECI CCNNGG 2 cut(s) 39, 403
BssMI GATC 3 cut(s) 11, 77, 83
BssNAI GTATAC 1 cut(s) 353
BssSI CACGAG 1 cut(s) 461
Bst1107I GTATAC 1 cut(s) 353
Bst2BI CACGAG 1 cut(s) 461
Bst2UI CCWGG 3 cut(s) 40, 75, 105
Bst6I CTCTTC 2 cut(s) 162, 225
BstDEI CTNAG 5 cut(s) 33, 45, 261, 369, 410
BstF5I GGATG 2 cut(s) 403, 472
BstKTI GATC 3 cut(s) 14, 80, 86
BstMBI GATC 3 cut(s) 11, 77, 83
BstMWI GCNNNNNNNGC 2 cut(s) 257, 303
BstNI CCWGG 3 cut(s) 40, 75, 105
BstSCI CCNGG 6 cut(s) 38, 73, 86, 103, 402, 477
BstSFI CTRYAG 1 cut(s) 385
BstV2I GAAGAC 1 cut(s) 428
BstX2I RGATCY 2 cut(s) 77, 83
BstYI RGATCY 2 cut(s) 77, 83
BstZ17I GTATAC 1 cut(s) 353
BsuRI GGCC 7 cut(s) 38, 50, 108, 132, 318, 402, 507
BtsCI GGATG 2 cut(s) 403, 472
BtsIMutI CAGTG 1 cut(s) 319
Cfr13I GGNCC 2 cut(s) 71, 131
DdeI CTNAG 5 cut(s) 33, 45, 261, 369, 410
DpnI GATC 3 cut(s) 13, 79, 85
DpnII GATC 3 cut(s) 11, 77, 83
EaeI YGGCCR 2 cut(s) 316, 400
Eam1104I CTCTTC 2 cut(s) 162, 225
EarI CTCTTC 2 cut(s) 162, 225
Eco47I GGWCC 1 cut(s) 71
EcoRII CCWGG 3 cut(s) 38, 73, 103
FaiI YATR 3 cut(s) 353, 417, 425
FalI AAGNNNNNCTT 2 cut(s) 174, 206
FaqI GGGAC 1 cut(s) 46
FblI GTMKAC 1 cut(s) 352
Fnu4HI GCNGC 1 cut(s) 535
FokI GGATG 2 cut(s) 410, 479
Fsp4HI GCNGC 1 cut(s) 535
FspBI CTAG 2 cut(s) 65, 122
GluI GCNGC 1 cut(s) 535
GsuI CTGGAG 1 cut(s) 343
HaeIII GGCC 7 cut(s) 38, 50, 108, 132, 318, 402, 507
HapII CCGG 5 cut(s) 69, 81, 88, 403, 479
HinfI GANTC 3 cut(s) 100, 172, 276
HpaII CCGG 5 cut(s) 69, 81, 88, 403, 479
Hpy166II GTNNAC 1 cut(s) 353
Hpy188I TCNGA 1 cut(s) 275
Hpy188III TCNNGA 2 cut(s) 81, 455
Hpy8I GTNNAC 1 cut(s) 353
HpyAV CCTTC 2 cut(s) 497, 524
HpyCH4IV ACGT 1 cut(s) 349
HpyCH4V TGCA 2 cut(s) 306, 500
HpyF10VI GCNNNNNNNGC 2 cut(s) 257, 303
HpyF3I CTNAG 5 cut(s) 33, 45, 261, 369, 410
HpySE526I ACGT 1 cut(s) 349
Kpn2I TCCGGA 1 cut(s) 80
Kzo9I GATC 3 cut(s) 11, 77, 83
MaeI CTAG 2 cut(s) 65, 122
MaeII ACGT 1 cut(s) 349
MaeIII GTNAC 2 cut(s) 364, 455
MalI GATC 3 cut(s) 13, 79, 85
MboI GATC 3 cut(s) 11, 77, 83
MboII GAAGA 5 cut(s) 109, 179, 242, 247, 428
MflI RGATCY 2 cut(s) 77, 83
MlsI TGGCCA 1 cut(s) 318
MluCI AATT 3 cut(s) 281, 449, 491
MluNI TGGCCA 1 cut(s) 318
MmeI TCCRAC 1 cut(s) 211
MnlI CCTC 8 cut(s) 145, 148, 190, 364, 405, 457, 463, 540
Mox20I TGGCCA 1 cut(s) 318
MroI TCCGGA 1 cut(s) 80
MroXI GAANNNNTTC 1 cut(s) 269
MscI TGGCCA 1 cut(s) 318
MseI TTAA 1 cut(s) 485
MslI CAYNNNNRTG 2 cut(s) 324, 465
Msp20I TGGCCA 1 cut(s) 318
MspA1I CMGCKG 1 cut(s) 260
MspI CCGG 5 cut(s) 69, 81, 88, 403, 479
MspR9I CCNGG 6 cut(s) 40, 75, 88, 105, 404, 479
Mva1269I GAATGC 1 cut(s) 251
MvaI CCWGG 3 cut(s) 40, 75, 105
MwoI GCNNNNNNNGC 2 cut(s) 257, 303
NciI CCSGG 3 cut(s) 88, 404, 479
NdeII GATC 3 cut(s) 11, 77, 83
NlaIV GGNNCC 3 cut(s) 79, 85, 133
NmuCI GTSAC 1 cut(s) 455
OliI CACNNNNGTG 1 cut(s) 324
PctI GAATGC 1 cut(s) 251
PdmI GAANNNNTTC 1 cut(s) 269
PfeI GAWTC 3 cut(s) 100, 172, 276
PkrI GCNGC 1 cut(s) 536
Psp6I CCWGG 3 cut(s) 38, 73, 103
PspGI CCWGG 3 cut(s) 38, 73, 103
PspN4I GGNNCC 3 cut(s) 79, 85, 133
PspPI GGNCC 2 cut(s) 71, 131
PsuI RGATCY 2 cut(s) 77, 83
PvuII CAGCTG 1 cut(s) 260
RseI CAYNNNNRTG 2 cut(s) 324, 465
SaqAI TTAA 1 cut(s) 485
SatI GCNGC 1 cut(s) 535
Sau3AI GATC 3 cut(s) 11, 77, 83
Sau96I GGNCC 2 cut(s) 71, 131
ScrFI CCNGG 6 cut(s) 40, 75, 88, 105, 404, 479
SetI ASST 7 cut(s) 123, 262, 271, 345, 352, 375, 416
SfcI CTRYAG 1 cut(s) 385
SinI GGWCC 1 cut(s) 71
SmiMI CAYNNNNRTG 2 cut(s) 324, 465
Sse9I AATT 3 cut(s) 281, 449, 491
SspI AATATT 1 cut(s) 393
SspMI CTAG 2 cut(s) 65, 122
StyD4I CCNGG 6 cut(s) 38, 73, 86, 103, 402, 477
TaiI ACGT 1 cut(s) 352
TasI AATT 3 cut(s) 281, 449, 491
TfiI GAWTC 3 cut(s) 100, 172, 276
Tru1I TTAA 1 cut(s) 485
Tru9I TTAA 1 cut(s) 485
TscAI CASTG 1 cut(s) 326
TseFI GTSAC 1 cut(s) 455
TseI GCWGC 1 cut(s) 534
Tsp45I GTSAC 1 cut(s) 455
TspDTI ATGAA 3 cut(s) 17, 168, 484
TspGWI ACGGA 1 cut(s) 127
TspRI CASTG 1 cut(s) 326
VpaK11BI GGWCC 1 cut(s) 71
XapI RAATTY 2 cut(s) 449, 491
XmiI GTMKAC 1 cut(s) 352
XmnI GAANNNNTTC 1 cut(s) 269
XspI CTAG 2 cut(s) 65, 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.