MD07G1018900.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000520
Physical Location & Seq
Forward (+)
1645999 .. 1649077
3079 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1018900.v1.1.491

Sequence Viewer

Length: 366 bp
ATGGCTGAGCTCCAACTTAACGAGAAGAATACTACTACTCCAAAACCAGAAGAGAGGAAAACGCGCAGCGCAGTCGTATTTACTAGACCTTTCAAATTCACAATCCCTTGTAAAGTTTGCGGTGTGGTTGGCCACTTGAATGATGATTGCCCCTACATGAAACGTGTTCCAAACAATGTAACTGAGGTTGGCAAGGGCTATGAAATAGTTACCTTCCGTGGTGAGAAGCATGCTGTTAGGATGTTATGTGGTTATTGTCATATCAGCGCTGACCACCAGAGCGATGACTGCCCGCATAAGAGCAAAATCATTGCATGGAAGAACTCCCTTCGGAAGCCCCCTCCTGTAGGTCCTCTCACCTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.62

Weight (kDa)

9.24

Isoelectric Point (pI)

43.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 64
AciI CCGC 2 cut(s) 120, 293
AcoI YGGCCR 1 cut(s) 130
AcsI RAATTY 1 cut(s) 95
AfeI AGCGCT 1 cut(s) 268
AfiI CCNNNNNNNGG 1 cut(s) 347
AflIII ACRYGT 1 cut(s) 163
AgsI TTSAA 2 cut(s) 94, 139
AluBI AGCT 1 cut(s) 10
AluI AGCT 1 cut(s) 10
Alw21I GWGCWC 1 cut(s) 12
Aor51HI AGCGCT 1 cut(s) 268
AoxI GGCC 1 cut(s) 130
ApeKI GCWGC 1 cut(s) 66
ApoI RAATTY 1 cut(s) 95
AspLEI GCGC 3 cut(s) 66, 71, 269
AspS9I GGNCC 1 cut(s) 350
AsuHPI GGTGA 2 cut(s) 233, 349
AvaII GGWCC 1 cut(s) 350
BalI TGGCCA 1 cut(s) 132
BanII GRGCYC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 12
BbvI GCAGC 1 cut(s) 78
BcgI CGANNNNNNTGC 2 cut(s) 55, 89
BfaI CTAG 1 cut(s) 84
BfmI CTRYAG 1 cut(s) 345
BfoI RGCGCY 1 cut(s) 270
BisI GCNGC 1 cut(s) 67
BlpI GCTNAGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 68
Bme18I GGWCC 1 cut(s) 350
BmgT120I GGNCC 1 cut(s) 350
Bpu1102I GCTNAGC 1 cut(s) 6
BsaJI CCNNGG 1 cut(s) 217
BsaXI ACNNNNNCTCC 2 cut(s) 22, 52
Bsc4I CCNNNNNNNGG 1 cut(s) 347
Bse3DI GCAATG 1 cut(s) 309
BseDI CCNNGG 1 cut(s) 217
BseGI GGATG 1 cut(s) 246
BseLI CCNNNNNNNGG 1 cut(s) 347
BseMI GCAATG 1 cut(s) 309
BseMII CTCAG 1 cut(s) 174
BseXI GCAGC 1 cut(s) 78
Bsh1236I CGCG 1 cut(s) 64
BshFI GGCC 1 cut(s) 132
BsiHKAI GWGCWC 1 cut(s) 12
BslI CCNNNNNNNGG 1 cut(s) 347
BsnI GGCC 1 cut(s) 132
Bsp1286I GDGCHC 1 cut(s) 12
Bsp1720I GCTNAGC 1 cut(s) 6
BspACI CCGC 2 cut(s) 120, 293
BspANI GGCC 1 cut(s) 132
BspCNI CTCAG 1 cut(s) 175
BspFNI CGCG 1 cut(s) 64
BsrDI GCAATG 1 cut(s) 309
BssECI CCNNGG 1 cut(s) 217
Bst6I CTCTTC 1 cut(s) 45
BstC8I GCNNGC 2 cut(s) 231, 293
BstDEI CTNAG 2 cut(s) 6, 183
BstDSI CCRYGG 1 cut(s) 217
BstENI CCTNNNNNAGG 1 cut(s) 345
BstF5I GGATG 1 cut(s) 246
BstFNI CGCG 1 cut(s) 64
BstH2I RGCGCY 1 cut(s) 270
BstHHI GCGC 3 cut(s) 66, 71, 269
BstMWI GCNNNNNNNGC 1 cut(s) 288
BstNSI RCATGY 1 cut(s) 233
BstSFI CTRYAG 1 cut(s) 345
BstUI CGCG 1 cut(s) 64
BstV1I GCAGC 1 cut(s) 78
BsuRI GGCC 1 cut(s) 132
BtgI CCRYGG 1 cut(s) 217
BtgZI GCGATG 1 cut(s) 297
BtsCI GGATG 1 cut(s) 246
Cac8I GCNNGC 2 cut(s) 231, 293
CfoI GCGC 3 cut(s) 66, 71, 269
Cfr13I GGNCC 1 cut(s) 350
CviAII CATG 3 cut(s) 157, 230, 315
CviJI RGCY 5 cut(s) 5, 10, 132, 198, 337
CviKI_1 RGCY 5 cut(s) 5, 10, 132, 198, 337
DdeI CTNAG 2 cut(s) 6, 183
EaeI YGGCCR 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
Ecl136II GAGCTC 1 cut(s) 10
Eco24I GRGCYC 1 cut(s) 12
Eco47I GGWCC 1 cut(s) 350
Eco47III AGCGCT 1 cut(s) 268
Eco53kI GAGCTC 1 cut(s) 10
EcoICRI GAGCTC 1 cut(s) 10
EcoNI CCTNNNNNAGG 1 cut(s) 345
EcoO109I RGGNCCY 1 cut(s) 350
EcoT38I GRGCYC 1 cut(s) 12
FaeI CATG 3 cut(s) 160, 233, 318
FaiI YATR 7 cut(s) 158, 201, 231, 247, 261, 297, 316
FatI CATG 3 cut(s) 156, 229, 314
FauI CCCGC 1 cut(s) 300
Fnu4HI GCNGC 1 cut(s) 67
FokI GGATG 1 cut(s) 253
FriOI GRGCYC 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 67
FspBI CTAG 1 cut(s) 84
GlaI GCGC 3 cut(s) 65, 70, 268
GluI GCNGC 1 cut(s) 67
HaeII RGCGCY 1 cut(s) 270
HaeIII GGCC 1 cut(s) 132
HhaI GCGC 3 cut(s) 66, 71, 269
Hin1II CATG 3 cut(s) 160, 233, 318
Hin6I GCGC 3 cut(s) 64, 69, 267
HinP1I GCGC 3 cut(s) 64, 69, 267
HphI GGTGA 2 cut(s) 233, 349
Hpy188I TCNGA 1 cut(s) 333
Hpy188III TCNNGA 1 cut(s) 363
HpyAV CCTTC 2 cut(s) 223, 338
HpyCH4IV ACGT 1 cut(s) 163
HpyCH4V TGCA 1 cut(s) 314
HpyF10VI GCNNNNNNNGC 1 cut(s) 288
HpyF3I CTNAG 2 cut(s) 6, 183
HpySE526I ACGT 1 cut(s) 163
Hsp92II CATG 3 cut(s) 160, 233, 318
HspAI GCGC 3 cut(s) 64, 69, 267
LmnI GCTCC 1 cut(s) 15
LpnPI CCDG 3 cut(s) 60, 290, 357
Lsp1109I GCAGC 1 cut(s) 78
MaeI CTAG 1 cut(s) 84
MaeII ACGT 1 cut(s) 163
MaeIII GTNAC 2 cut(s) 178, 208
MboII GAAGA 3 cut(s) 37, 62, 331
MhlI GDGCHC 1 cut(s) 12
MlsI TGGCCA 1 cut(s) 132
MluCI AATT 1 cut(s) 95
MluNI TGGCCA 1 cut(s) 132
MmeI TCCRAC 1 cut(s) 37
MnlI CCTC 4 cut(s) 48, 178, 351, 363
Mox20I TGGCCA 1 cut(s) 132
MscI TGGCCA 1 cut(s) 132
MseI TTAA 1 cut(s) 18
MslI CAYNNNNRTG 1 cut(s) 138
Msp20I TGGCCA 1 cut(s) 132
MteI GCGCNGCGC 1 cut(s) 67
MvnI CGCG 1 cut(s) 64
MwoI GCNNNNNNNGC 1 cut(s) 288
NlaIII CATG 3 cut(s) 160, 233, 318
NspI RCATGY 1 cut(s) 233
PaeI GCATGC 1 cut(s) 233
PkrI GCNGC 1 cut(s) 68
PpuMI RGGWCCY 1 cut(s) 350
Psp124BI GAGCTC 1 cut(s) 12
Psp5II RGGWCCY 1 cut(s) 350
PspPI GGNCC 1 cut(s) 350
PspPPI RGGWCCY 1 cut(s) 350
RseI CAYNNNNRTG 1 cut(s) 138
SacI GAGCTC 1 cut(s) 12
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 1 cut(s) 67
Sau96I GGNCC 1 cut(s) 350
SduI GDGCHC 1 cut(s) 12
SetI ASST 7 cut(s) 12, 91, 166, 189, 215, 352, 362
SfcI CTRYAG 1 cut(s) 345
SinI GGWCC 1 cut(s) 350
SmiMI CAYNNNNRTG 1 cut(s) 138
SphI GCATGC 1 cut(s) 233
Sse9I AATT 1 cut(s) 95
SsiI CCGC 2 cut(s) 120, 293
SspMI CTAG 1 cut(s) 84
SstI GAGCTC 1 cut(s) 12
TaiI ACGT 1 cut(s) 166
TasI AATT 1 cut(s) 95
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TseI GCWGC 1 cut(s) 66
TspDTI ATGAA 2 cut(s) 173, 216
TspGWI ACGGA 1 cut(s) 206
VpaK11BI GGWCC 1 cut(s) 350
XagI CCTNNNNNAGG 1 cut(s) 345
XapI RAATTY 1 cut(s) 95
XceI RCATGY 1 cut(s) 233
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.