MD07G1023400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000520
Physical Location & Seq
Forward (+)
1947372 .. 1949034
1663 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1023400.v1.1.491

Sequence Viewer

Length: 372 bp
ATGGCTCGACTCCAACTTGACGAGGAGAATACTACTATTCCAAAATCACAACCCCTTGTAAAGTTTGCTAGACCTTTCAAATTCACAGTCCCTTGTGAAGTTTGCGGAGTGGTTGGCCACTATAATGATAGATGCCCCTACATCGAAGTAGGCCTCCCAGACAACGTAACTGAGGCTCCCAAGGGCTATGAAATAGTTACCTTACGTGGTGGGAAGCGTGCTGTTAGGATCATGTTTTGTGGTTGTTGTAAAATGCTCCGTGACCACAAGATCAAGGACTGCCCGAATAAGAGCAAGATGACTGCAATAATGAACTCTATTCTGAAGGCTGCTCGCCCTCCTGCAGGTCCGCTGACCACAGGATCTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.58

Weight (kDa)

9.22

Isoelectric Point (pI)

51.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 335
AciI CCGC 2 cut(s) 105, 350
AclWI GGATC 2 cut(s) 236, 370
AcoI YGGCCR 1 cut(s) 115
AcsI RAATTY 1 cut(s) 80
AcuI CTGAAG 1 cut(s) 344
AfiI CCNNNNNNNGG 1 cut(s) 344
AgsI TTSAA 1 cut(s) 79
AlwI GGATC 2 cut(s) 236, 370
AoxI GGCC 2 cut(s) 115, 151
ApeKI GCWGC 1 cut(s) 329
ApoI RAATTY 1 cut(s) 80
ArsI GACNNNNNNTTYG 2 cut(s) 72, 104
AspS9I GGNCC 1 cut(s) 347
AvaII GGWCC 1 cut(s) 347
BalI TGGCCA 1 cut(s) 117
BbvI GCAGC 1 cut(s) 316
BfaI CTAG 1 cut(s) 69
BfmI CTRYAG 1 cut(s) 342
BfuAI ACCTGC 1 cut(s) 335
BisI GCNGC 1 cut(s) 330
BlsI GCNGC 1 cut(s) 331
Bme18I GGWCC 1 cut(s) 347
BmgT120I GGNCC 1 cut(s) 347
BmiI GGNNCC 1 cut(s) 177
BmsI GCATC 1 cut(s) 122
BsaAI YACGTR 1 cut(s) 206
BsaJI CCNNGG 1 cut(s) 180
BsaXI ACNNNNNCTCC 2 cut(s) 160, 190
Bsc4I CCNNNNNNNGG 1 cut(s) 344
BseDI CCNNGG 1 cut(s) 180
BseLI CCNNNNNNNGG 1 cut(s) 344
BseMII CTCAG 1 cut(s) 162
BseRI GAGGAG 1 cut(s) 38
BseXI GCAGC 1 cut(s) 316
BshFI GGCC 2 cut(s) 117, 153
BslFI GGGAC 1 cut(s) 74
BslI CCNNNNNNNGG 1 cut(s) 344
BsmFI GGGAC 1 cut(s) 74
BsnI GGCC 2 cut(s) 117, 153
Bsp143I GATC 3 cut(s) 228, 270, 362
BspACI CCGC 2 cut(s) 105, 350
BspANI GGCC 2 cut(s) 117, 153
BspCNI CTCAG 1 cut(s) 163
BspLI GGNNCC 1 cut(s) 177
BspMAI CTGCAG 1 cut(s) 346
BspMI ACCTGC 1 cut(s) 335
BspPI GGATC 2 cut(s) 236, 370
BssECI CCNNGG 1 cut(s) 180
BssMI GATC 3 cut(s) 228, 270, 362
BssT1I CCWWGG 1 cut(s) 180
Bst4CI ACNGT 1 cut(s) 88
BstBAI YACGTR 1 cut(s) 206
BstC8I GCNNGC 2 cut(s) 219, 334
BstDEI CTNAG 1 cut(s) 171
BstENI CCTNNNNNAGG 1 cut(s) 342
BstKTI GATC 3 cut(s) 231, 273, 365
BstMBI GATC 3 cut(s) 228, 270, 362
BstSFI CTRYAG 1 cut(s) 342
BstV1I GCAGC 1 cut(s) 316
BstX2I RGATCY 1 cut(s) 362
BstYI RGATCY 1 cut(s) 362
BsuRI GGCC 2 cut(s) 117, 153
BveI ACCTGC 1 cut(s) 335
Cac8I GCNNGC 2 cut(s) 219, 334
Cfr13I GGNCC 1 cut(s) 347
CviAII CATG 1 cut(s) 232
CviJI RGCY 6 cut(s) 5, 117, 153, 176, 186, 329
CviKI_1 RGCY 6 cut(s) 5, 117, 153, 176, 186, 329
DdeI CTNAG 1 cut(s) 171
DpnI GATC 3 cut(s) 230, 272, 364
DpnII GATC 3 cut(s) 228, 270, 362
EaeI YGGCCR 1 cut(s) 115
Eco130I CCWWGG 1 cut(s) 180
Eco147I AGGCCT 1 cut(s) 153
Eco47I GGWCC 1 cut(s) 347
Eco57I CTGAAG 1 cut(s) 344
EcoNI CCTNNNNNAGG 1 cut(s) 342
EcoT14I CCWWGG 1 cut(s) 180
ErhI CCWWGG 1 cut(s) 180
FaeI CATG 1 cut(s) 235
FaiI YATR 3 cut(s) 123, 189, 233
FaqI GGGAC 1 cut(s) 74
FatI CATG 1 cut(s) 231
Fnu4HI GCNGC 1 cut(s) 330
Fsp4HI GCNGC 1 cut(s) 330
FspBI CTAG 1 cut(s) 69
GluI GCNGC 1 cut(s) 330
HaeIII GGCC 2 cut(s) 117, 153
Hin1II CATG 1 cut(s) 235
HinfI GANTC 1 cut(s) 9
Hpy188I TCNGA 1 cut(s) 324
HpyAV CCTTC 1 cut(s) 319
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4IV ACGT 2 cut(s) 165, 205
HpyCH4V TGCA 2 cut(s) 305, 344
HpyF3I CTNAG 1 cut(s) 171
HpySE526I ACGT 2 cut(s) 165, 205
Hsp92II CATG 1 cut(s) 235
Kzo9I GATC 3 cut(s) 228, 270, 362
LmnI GCTCC 2 cut(s) 181, 261
LpnPI CCDG 4 cut(s) 171, 330, 345, 354
Lsp1109I GCAGC 1 cut(s) 316
LweI GCATC 1 cut(s) 122
MaeI CTAG 1 cut(s) 69
MaeII ACGT 2 cut(s) 165, 205
MaeIII GTNAC 3 cut(s) 166, 196, 260
MalI GATC 3 cut(s) 230, 272, 364
MboI GATC 3 cut(s) 228, 270, 362
MflI RGATCY 1 cut(s) 362
MlsI TGGCCA 1 cut(s) 117
MluCI AATT 1 cut(s) 80
MluNI TGGCCA 1 cut(s) 117
MlyI GAGTC 1 cut(s) 3
MmeI TCCRAC 1 cut(s) 37
MnlI CCTC 4 cut(s) 16, 164, 166, 348
Mox20I TGGCCA 1 cut(s) 117
MscI TGGCCA 1 cut(s) 117
MslI CAYNNNNRTG 1 cut(s) 123
Msp20I TGGCCA 1 cut(s) 117
MspA1I CMGCKG 1 cut(s) 352
NdeII GATC 3 cut(s) 228, 270, 362
NlaIII CATG 1 cut(s) 235
NlaIV GGNNCC 1 cut(s) 177
NmuCI GTSAC 1 cut(s) 260
PceI AGGCCT 1 cut(s) 153
PkrI GCNGC 1 cut(s) 331
PleI GAGTC 1 cut(s) 3
PpsI GAGTC 1 cut(s) 3
Ppu21I YACGTR 1 cut(s) 206
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 1 cut(s) 347
PstI CTGCAG 1 cut(s) 346
PsuI RGATCY 1 cut(s) 362
RseI CAYNNNNRTG 1 cut(s) 123
SatI GCNGC 1 cut(s) 330
Sau3AI GATC 3 cut(s) 228, 270, 362
Sau96I GGNCC 1 cut(s) 347
SbfI CCTGCAGG 1 cut(s) 346
SchI GAGTC 1 cut(s) 3
SdaI CCTGCAGG 1 cut(s) 346
SetI ASST 5 cut(s) 76, 168, 203, 208, 349
SfaNI GCATC 1 cut(s) 122
SfcI CTRYAG 1 cut(s) 342
SinI GGWCC 1 cut(s) 347
SmiMI CAYNNNNRTG 1 cut(s) 123
Sse8387I CCTGCAGG 1 cut(s) 346
Sse9I AATT 1 cut(s) 80
SseBI AGGCCT 1 cut(s) 153
SsiI CCGC 2 cut(s) 105, 350
SspMI CTAG 1 cut(s) 69
StuI AGGCCT 1 cut(s) 153
StyI CCWWGG 1 cut(s) 180
TaaI ACNGT 1 cut(s) 88
TaiI ACGT 2 cut(s) 168, 208
TaqI TCGA 2 cut(s) 7, 144
TasI AATT 1 cut(s) 80
TseFI GTSAC 1 cut(s) 260
TseI GCWGC 1 cut(s) 329
Tsp45I GTSAC 1 cut(s) 260
TspDTI ATGAA 2 cut(s) 204, 326
TspGWI ACGGA 1 cut(s) 248
VpaK11BI GGWCC 1 cut(s) 347
XagI CCTNNNNNAGG 1 cut(s) 342
XapI RAATTY 1 cut(s) 80
XspI CTAG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.