MD02G1311300.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0000520
Physical Location & Seq
Forward (+)
36647112 .. 36649571
2460 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1311300.v1.1.491

Sequence Viewer

Length: 486 bp
ATGATCAACCGATCCAAGGCCGAGGCCAAGGCCAGGTTCAAGGCTAAGGCCAAGTCGAAGTCCCTAGCCGGACGAGGATCCGGATCCTGGCAGGGGAAGATTCCAGGCCAACCGACGAAGCCCGGAGATGGCCCTCCTACTCAACTCAAAAATCAAAAGGCTGTTGAAAAGAATCTGGCTAAAGTCCAGCTTGACAAGGAGAATTCTACTACTCCAAAACCAAAACCAGAAAAGAGAAAGAGCAGAATGGGTAGAACTTTCCTATTCACAGACCCTTGTCGAATTTGCAATGTGTTTGGGCACTGGACTGATTTATGCCCCTACCTGAAATTTGTCCCATACAACGTAACTAAGGTTGGCAAGGGCTATGAAATACATGACGGCCGCCATGGGAGGTATGCTGCTCCGATTTATTGTCTTAACTGTATGGAGCCGGTTGAACACGAGGCTGGAAAGTGCCCGCACGACACTGATGCATGGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

18.03

Weight (kDa)

9.72

Isoelectric Point (pI)

19.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 80
AciI CCGC 2 cut(s) 385, 461
AclWI GGATC 5 cut(s) 6, 72, 78, 85, 91
AcoI YGGCCR 1 cut(s) 382
AcsI RAATTY 3 cut(s) 202, 282, 329
AfiI CCNNNNNNNGG 5 cut(s) 16, 33, 87, 93, 128
AgsI TTSAA 3 cut(s) 40, 167, 440
AjnI CCWGG 3 cut(s) 32, 86, 103
AjuI GAANNNNNNNTTGG 2 cut(s) 20, 52
AluBI AGCT 1 cut(s) 190
AluI AGCT 1 cut(s) 190
AlwI GGATC 5 cut(s) 6, 72, 78, 85, 91
Aor13HI TCCGGA 1 cut(s) 80
AoxI GGCC 7 cut(s) 18, 24, 30, 48, 106, 130, 382
ApeKI GCWGC 1 cut(s) 401
ApoI RAATTY 3 cut(s) 202, 282, 329
AspS9I GGNCC 1 cut(s) 131
AsuC2I CCSGG 1 cut(s) 123
BaeGI GKGCMC 2 cut(s) 303, 461
BamHI GGATCC 2 cut(s) 77, 83
BauI CACGAG 1 cut(s) 443
BbvI GCAGC 1 cut(s) 388
BccI CCATC 1 cut(s) 122
BceAI ACGGC 1 cut(s) 397
BcgI CGANNNNNNTGC 1 cut(s) 455
BciT130I CCWGG 3 cut(s) 34, 88, 105
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 1 cut(s) 123
BfaI CTAG 1 cut(s) 65
BisI GCNGC 2 cut(s) 385, 402
BlsI GCNGC 2 cut(s) 386, 403
Bme1390I CCNGG 4 cut(s) 34, 88, 105, 123
BmgT120I GGNCC 1 cut(s) 131
BmiI GGNNCC 3 cut(s) 79, 85, 432
BmrFI CCNGG 4 cut(s) 34, 88, 105, 123
BmsI GCATC 1 cut(s) 463
BoxI GACNNNNGTC 1 cut(s) 276
Bpu10I CCTNAGC 1 cut(s) 45
BpuMI CCSGG 1 cut(s) 123
BsaBI GATNNNNATC 1 cut(s) 82
BsaJI CCNNGG 4 cut(s) 15, 21, 27, 388
BsaWI WCCGGW 1 cut(s) 80
Bsc4I CCNNNNNNNGG 5 cut(s) 16, 33, 87, 93, 128
Bse118I RCCGGY 1 cut(s) 433
Bse1I ACTGG 1 cut(s) 308
Bse3DI GCAATG 1 cut(s) 295
Bse8I GATNNNNATC 1 cut(s) 82
BseAI TCCGGA 1 cut(s) 80
BseBI CCWGG 3 cut(s) 34, 88, 105
BseDI CCNNGG 4 cut(s) 15, 21, 27, 388
BseJI GATNNNNATC 1 cut(s) 82
BseLI CCNNNNNNNGG 5 cut(s) 16, 33, 87, 93, 128
BseMI GCAATG 1 cut(s) 295
BseNI ACTGG 1 cut(s) 308
BseSI GKGCMC 2 cut(s) 303, 461
BseX3I CGGCCG 1 cut(s) 382
BseXI GCAGC 1 cut(s) 388
Bsh1285I CGRYCG 1 cut(s) 385
BshFI GGCC 7 cut(s) 20, 26, 32, 50, 108, 132, 384
BsiEI CGRYCG 1 cut(s) 385
BsiSI CCGG 4 cut(s) 69, 81, 123, 434
BslFI GGGAC 2 cut(s) 46, 320
BslI CCNNNNNNNGG 5 cut(s) 16, 33, 87, 93, 128
BsmFI GGGAC 2 cut(s) 46, 320
BsnI GGCC 7 cut(s) 20, 26, 32, 50, 108, 132, 384
Bsp1286I GDGCHC 2 cut(s) 303, 461
Bsp13I TCCGGA 1 cut(s) 80
Bsp143I GATC 4 cut(s) 3, 11, 77, 83
Bsp19I CCATGG 1 cut(s) 388
BspACI CCGC 2 cut(s) 385, 461
BspANI GGCC 7 cut(s) 20, 26, 32, 50, 108, 132, 384
BspEI TCCGGA 1 cut(s) 80
BspLI GGNNCC 3 cut(s) 79, 85, 432
BspPI GGATC 5 cut(s) 6, 72, 78, 85, 91
BsrDI GCAATG 1 cut(s) 295
BsrFI RCCGGY 1 cut(s) 433
BsrI ACTGG 1 cut(s) 308
BssAI RCCGGY 1 cut(s) 433
BssECI CCNNGG 4 cut(s) 15, 21, 27, 388
BssMI GATC 4 cut(s) 3, 11, 77, 83
BssSI CACGAG 1 cut(s) 443
BssT1I CCWWGG 3 cut(s) 15, 27, 388
Bst2BI CACGAG 1 cut(s) 443
Bst2UI CCWGG 3 cut(s) 34, 88, 105
Bst4CI ACNGT 1 cut(s) 425
BstC8I GCNNGC 1 cut(s) 461
BstDEI CTNAG 2 cut(s) 45, 351
BstDSI CCRYGG 1 cut(s) 388
BstKTI GATC 4 cut(s) 6, 14, 80, 86
BstMBI GATC 4 cut(s) 3, 11, 77, 83
BstMCI CGRYCG 1 cut(s) 385
BstNI CCWGG 3 cut(s) 34, 88, 105
BstPAI GACNNNNGTC 1 cut(s) 276
BstSCI CCNGG 4 cut(s) 32, 86, 103, 121
BstSLI GKGCMC 2 cut(s) 303, 461
BstV1I GCAGC 1 cut(s) 388
BstX2I RGATCY 2 cut(s) 77, 83
BstYI RGATCY 2 cut(s) 77, 83
BstZI CGGCCG 1 cut(s) 382
BsuRI GGCC 7 cut(s) 20, 26, 32, 50, 108, 132, 384
BtgI CCRYGG 1 cut(s) 388
BtsIMutI CAGTG 2 cut(s) 301, 468
Cac8I GCNNGC 1 cut(s) 461
Cfr10I RCCGGY 1 cut(s) 433
Cfr13I GGNCC 1 cut(s) 131
CviAII CATG 3 cut(s) 377, 389, 477
DdeI CTNAG 2 cut(s) 45, 351
DpnI GATC 4 cut(s) 5, 13, 79, 85
DpnII GATC 4 cut(s) 3, 11, 77, 83
EaeI YGGCCR 1 cut(s) 382
EagI CGGCCG 1 cut(s) 382
EclXI CGGCCG 1 cut(s) 382
Eco130I CCWWGG 3 cut(s) 15, 27, 388
Eco52I CGGCCG 1 cut(s) 382
EcoRI GAATTC 1 cut(s) 202
EcoRII CCWGG 3 cut(s) 32, 86, 103
EcoT14I CCWWGG 3 cut(s) 15, 27, 388
EcoT22I ATGCAT 1 cut(s) 478
ErhI CCWWGG 3 cut(s) 15, 27, 388
FaeI CATG 3 cut(s) 380, 392, 480
FaiI YATR 8 cut(s) 316, 340, 369, 378, 390, 399, 428, 478
FalI AAGNNNNNCTT 2 cut(s) 174, 206
FaqI GGGAC 2 cut(s) 46, 320
FatI CATG 3 cut(s) 376, 388, 476
FauI CCCGC 1 cut(s) 468
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 2 cut(s) 385, 402
Fsp4HI GCNGC 2 cut(s) 385, 402
FspBI CTAG 1 cut(s) 65
GluI GCNGC 2 cut(s) 385, 402
HaeIII GGCC 7 cut(s) 20, 26, 32, 50, 108, 132, 384
HapII CCGG 4 cut(s) 69, 81, 123, 434
Hin1II CATG 3 cut(s) 380, 392, 480
HinfI GANTC 2 cut(s) 100, 172
HpaII CCGG 4 cut(s) 69, 81, 123, 434
Hpy188I TCNGA 1 cut(s) 408
Hpy188III TCNNGA 1 cut(s) 81
Hpy99I CGWCG 1 cut(s) 118
HpyCH4III ACNGT 1 cut(s) 425
HpyCH4IV ACGT 1 cut(s) 345
HpyCH4V TGCA 2 cut(s) 288, 476
HpyF3I CTNAG 2 cut(s) 45, 351
HpySE526I ACGT 1 cut(s) 345
Hsp92II CATG 3 cut(s) 380, 392, 480
Kpn2I TCCGGA 1 cut(s) 80
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 4 cut(s) 3, 11, 77, 83
LmnI GCTCC 2 cut(s) 409, 430
Lsp1109I GCAGC 1 cut(s) 388
LweI GCATC 1 cut(s) 463
MaeI CTAG 1 cut(s) 65
MaeII ACGT 1 cut(s) 345
MaeIII GTNAC 1 cut(s) 346
MalI GATC 4 cut(s) 5, 13, 79, 85
MboI GATC 4 cut(s) 3, 11, 77, 83
MboII GAAGA 1 cut(s) 109
MflI RGATCY 2 cut(s) 77, 83
MhlI GDGCHC 2 cut(s) 303, 461
MluCI AATT 3 cut(s) 202, 282, 329
MnlI CCTC 5 cut(s) 16, 68, 144, 387, 439
Mph1103I ATGCAT 1 cut(s) 478
MroI TCCGGA 1 cut(s) 80
MseI TTAA 1 cut(s) 420
MspI CCGG 4 cut(s) 69, 81, 123, 434
MspR9I CCNGG 4 cut(s) 34, 88, 105, 123
MvaI CCWGG 3 cut(s) 34, 88, 105
NciI CCSGG 1 cut(s) 123
NcoI CCATGG 1 cut(s) 388
NdeII GATC 4 cut(s) 3, 11, 77, 83
NlaIII CATG 3 cut(s) 380, 392, 480
NlaIV GGNNCC 3 cut(s) 79, 85, 432
NmeAIII GCCGAG 1 cut(s) 46
NsiI ATGCAT 1 cut(s) 478
PfeI GAWTC 2 cut(s) 100, 172
PkrI GCNGC 2 cut(s) 386, 403
PshAI GACNNNNGTC 1 cut(s) 276
Psp6I CCWGG 3 cut(s) 32, 86, 103
PspGI CCWGG 3 cut(s) 32, 86, 103
PspN4I GGNNCC 3 cut(s) 79, 85, 432
PspPI GGNCC 1 cut(s) 131
PsuI RGATCY 2 cut(s) 77, 83
SaqAI TTAA 1 cut(s) 420
SatI GCNGC 2 cut(s) 385, 402
Sau3AI GATC 4 cut(s) 3, 11, 77, 83
Sau96I GGNCC 1 cut(s) 131
ScrFI CCNGG 4 cut(s) 34, 88, 105, 123
SduI GDGCHC 2 cut(s) 303, 461
SetI ASST 6 cut(s) 38, 192, 327, 348, 357, 398
SfaNI GCATC 1 cut(s) 463
Sse9I AATT 3 cut(s) 202, 282, 329
SsiI CCGC 2 cut(s) 385, 461
SspMI CTAG 1 cut(s) 65
StyD4I CCNGG 4 cut(s) 32, 86, 103, 121
StyI CCWWGG 3 cut(s) 15, 27, 388
TaaI ACNGT 1 cut(s) 425
TaiI ACGT 1 cut(s) 348
TaqI TCGA 2 cut(s) 56, 280
TasI AATT 3 cut(s) 202, 282, 329
TauI GCSGC 1 cut(s) 387
TfiI GAWTC 2 cut(s) 100, 172
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TscAI CASTG 2 cut(s) 308, 475
TseI GCWGC 1 cut(s) 401
TspDTI ATGAA 1 cut(s) 384
TspRI CASTG 2 cut(s) 308, 475
XapI RAATTY 3 cut(s) 202, 282, 329
XspI CTAG 1 cut(s) 65
Zsp2I ATGCAT 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.