MD07G1019400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000520
Physical Location & Seq
Forward (+)
1663992 .. 1664740
749 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1019400.v1.1.491

Sequence Viewer

Length: 144 bp
ATGGGGAACCGCCGACTCGAAGTCACCAGATCCAATTTCAAGTCCCCCTCCGGACCGAAGAAACTCCGAGTTTGCGGAGTGGTTGGCCACTTTAATGATGATTGCCCCTACATGATACGTGTTCCAAACAATGGCCACTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

48

Amino Acids

5.29

Weight (kDa)

9.75

Isoelectric Point (pI)

47.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 131
AccIII TCCGGA 1 cut(s) 50
AciI CCGC 2 cut(s) 10, 75
AclWI GGATC 1 cut(s) 24
AcoI YGGCCR 2 cut(s) 85, 133
AfiI CCNNNNNNNGG 1 cut(s) 131
AflIII ACRYGT 1 cut(s) 118
AgsI TTSAA 1 cut(s) 40
AhdI GACNNNNNGTC 1 cut(s) 20
AlwI GGATC 1 cut(s) 24
Aor13HI TCCGGA 1 cut(s) 50
AoxI GGCC 2 cut(s) 85, 133
AspS9I GGNCC 1 cut(s) 53
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 1 cut(s) 53
BalI TGGCCA 2 cut(s) 87, 135
Bme18I GGWCC 1 cut(s) 53
BmeRI GACNNNNNGTC 1 cut(s) 20
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 1 cut(s) 8
BsaAI YACGTR 1 cut(s) 119
BsaWI WCCGGW 1 cut(s) 50
Bsc4I CCNNNNNNNGG 1 cut(s) 131
BseAI TCCGGA 1 cut(s) 50
BseLI CCNNNNNNNGG 1 cut(s) 131
BshFI GGCC 2 cut(s) 87, 135
BsiSI CCGG 1 cut(s) 51
BslFI GGGAC 1 cut(s) 28
BslI CCNNNNNNNGG 1 cut(s) 131
BsmFI GGGAC 1 cut(s) 28
BsnI GGCC 2 cut(s) 87, 135
Bsp13I TCCGGA 1 cut(s) 50
Bsp143I GATC 1 cut(s) 29
BspACI CCGC 2 cut(s) 10, 75
BspANI GGCC 2 cut(s) 87, 135
BspEI TCCGGA 1 cut(s) 50
BspLI GGNNCC 1 cut(s) 8
BspPI GGATC 1 cut(s) 24
BssMI GATC 1 cut(s) 29
Bst4CI ACNGT 1 cut(s) 140
BstBAI YACGTR 1 cut(s) 119
BstKTI GATC 1 cut(s) 32
BstMBI GATC 1 cut(s) 29
BstX2I RGATCY 1 cut(s) 29
BstYI RGATCY 1 cut(s) 29
BsuRI GGCC 2 cut(s) 87, 135
BtsIMutI CAGTG 1 cut(s) 136
Cfr13I GGNCC 1 cut(s) 53
CpoI CGGWCCG 1 cut(s) 53
CspI CGGWCCG 1 cut(s) 53
CviAII CATG 1 cut(s) 112
CviJI RGCY 2 cut(s) 87, 135
CviKI_1 RGCY 2 cut(s) 87, 135
DpnI GATC 1 cut(s) 31
DpnII GATC 1 cut(s) 29
DriI GACNNNNNGTC 1 cut(s) 20
EaeI YGGCCR 2 cut(s) 85, 133
Eam1105I GACNNNNNGTC 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 53
FaeI CATG 1 cut(s) 115
FaiI YATR 1 cut(s) 113
FaqI GGGAC 1 cut(s) 28
FatI CATG 1 cut(s) 111
HaeIII GGCC 2 cut(s) 87, 135
HapII CCGG 1 cut(s) 51
Hin1II CATG 1 cut(s) 115
HinfI GANTC 1 cut(s) 15
HpaII CCGG 1 cut(s) 51
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 1 cut(s) 68
Hpy188III TCNNGA 1 cut(s) 51
HpyCH4III ACNGT 1 cut(s) 140
HpyCH4IV ACGT 1 cut(s) 118
HpySE526I ACGT 1 cut(s) 118
Hsp92II CATG 1 cut(s) 115
Kpn2I TCCGGA 1 cut(s) 50
Kzo9I GATC 1 cut(s) 29
LpnPI CCDG 2 cut(s) 40, 64
MaeII ACGT 1 cut(s) 118
MaeIII GTNAC 1 cut(s) 22
MalI GATC 1 cut(s) 31
MboI GATC 1 cut(s) 29
MboII GAAGA 1 cut(s) 70
MflI RGATCY 1 cut(s) 29
MlsI TGGCCA 2 cut(s) 87, 135
MluCI AATT 1 cut(s) 34
MluNI TGGCCA 2 cut(s) 87, 135
MlyI GAGTC 1 cut(s) 9
MnlI CCTC 1 cut(s) 58
Mox20I TGGCCA 2 cut(s) 87, 135
MroI TCCGGA 1 cut(s) 50
MscI TGGCCA 2 cut(s) 87, 135
MseI TTAA 1 cut(s) 93
MslI CAYNNNNRTG 1 cut(s) 93
Msp20I TGGCCA 2 cut(s) 87, 135
MspI CCGG 1 cut(s) 51
NdeII GATC 1 cut(s) 29
NlaIII CATG 1 cut(s) 115
NlaIV GGNNCC 1 cut(s) 8
NmuCI GTSAC 1 cut(s) 22
PflMI CCANNNNNTGG 1 cut(s) 131
PleI GAGTC 1 cut(s) 9
PpsI GAGTC 1 cut(s) 9
Ppu21I YACGTR 1 cut(s) 119
PspN4I GGNNCC 1 cut(s) 8
PspPI GGNCC 1 cut(s) 53
PsuI RGATCY 1 cut(s) 29
RseI CAYNNNNRTG 1 cut(s) 93
Rsr2I CGGWCCG 1 cut(s) 53
RsrII CGGWCCG 1 cut(s) 53
SaqAI TTAA 1 cut(s) 93
Sau3AI GATC 1 cut(s) 29
Sau96I GGNCC 1 cut(s) 53
SchI GAGTC 1 cut(s) 9
SetI ASST 1 cut(s) 121
SgeI CNNG 7 cut(s) 29, 39, 52, 63, 80, 124, 131
SinI GGWCC 1 cut(s) 53
SmiMI CAYNNNNRTG 1 cut(s) 93
Sse9I AATT 1 cut(s) 34
SsiI CCGC 2 cut(s) 10, 75
TaaI ACNGT 1 cut(s) 140
TaiI ACGT 1 cut(s) 121
TaqI TCGA 1 cut(s) 18
TaqII GACCGA 1 cut(s) 70
TasI AATT 1 cut(s) 34
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TscAI CASTG 1 cut(s) 143
TseFI GTSAC 1 cut(s) 22
Tsp45I GTSAC 1 cut(s) 22
TspRI CASTG 1 cut(s) 143
Van91I CCANNNNNTGG 1 cut(s) 131
VpaK11BI GGWCC 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.