Rroxscaffold_2G00105770

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000520
Physical Location & Seq
Reverse (-)
29209268 .. 29235441
26174 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00105770.1

Sequence Viewer

Length: 798 bp
ATGGACAGCAATTTCTCAGGGTCGATTGCAAAATTGAGAGGAGCGTCGGACGATGAGATCTCGATGGGGCAGCGCGGGGATTTGATGAAGCCCAATAGCTCCGAGGTTTTGTGCTATCCATCAGCCAAAACAAAGGTCTCATCGATCACCGATCATACTGATTTGGTCCTGGAGGAGCCAGATCGCCTCGGGAAAAAACCCGGCAAGGACATTGCACACCCCGCAGAACCAGACATCAGTGCTGCTGCAGCCAGTCTCAACCCTAAATTAGCCGCCCTTTCTCTGGGAAACAAAGGGAAACGGTTGTGCTCTGGACCAAAAGGTCGTATTTCTCGAAGGCGCAATCGAAAAGATAGGGGAGCGTCCATTGGTCTAGCAATAAAACCTCAAATTAGCAGGCAGGCTACTGGAGTATCAGACAAAAACAATAAAAAAGTGCCTGCAGTTGCTTCTTCTACTTCTGTCGTCACCGAAAGAGGAGGATGTCAGATCTGTGGTCATGACCACCAGCACCACATTCGTTGCCCATACTTGGAGTTGGTTCCACCTGGCGGAACTGTTGGCCCTGACTATCTAGTAGTATGTGGCGAATGTGGTTATGAGTTAAAGCAGCCTATTCCGGCTTTTTGTTGGTCGTGCGGTTATTGGGGAGGGCGTGCGGTGGAGGCGTCTACCTTTGATTATAGCCTTCGTTACCACCTAGATGAATATTATATAGAAGTACCAGTTACGGCAGAGTACATGGACCCAGACAAGTACACAGAACAAAAACCTGTTATGGCACAGTCCTCATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

265

Amino Acids

28.73

Weight (kDa)

8.3

Isoelectric Point (pI)

41.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 321
AccI GTMKAC 1 cut(s) 671
AccII CGCG 1 cut(s) 75
AciI CCGC 6 cut(s) 75, 222, 273, 552, 639, 659
AcyI GRCGYC 1 cut(s) 668
AfaI GTAC 3 cut(s) 723, 740, 758
AfiI CCNNNNNNNGG 3 cut(s) 283, 532, 551
AjnI CCWGG 2 cut(s) 168, 547
AluBI AGCT 1 cut(s) 99
AluI AGCT 1 cut(s) 99
Alw21I GWGCWC 1 cut(s) 311
Alw26I GTCTC 2 cut(s) 142, 260
Ama87I CYCGRG 1 cut(s) 188
AoxI GGCC 1 cut(s) 562
ApeKI GCWGC 5 cut(s) 70, 242, 245, 248, 610
ArsI GACNNNNNNTTYG 2 cut(s) 120, 152
AspLEI GCGC 2 cut(s) 75, 342
AspS9I GGNCC 4 cut(s) 166, 314, 563, 745
AsuC2I CCSGG 1 cut(s) 201
AsuHPI GGTGA 2 cut(s) 139, 460
AvaI CYCGRG 1 cut(s) 188
AvaII GGWCC 3 cut(s) 166, 314, 745
BaeI ACNNNNGTAYC 2 cut(s) 396, 429
Bbv12I GWGCWC 1 cut(s) 311
BbvI GCAGC 5 cut(s) 82, 229, 232, 260, 622
BccI CCATC 2 cut(s) 58, 127
BceAI ACGGC 1 cut(s) 747
BcgI CGANNNNNNTGC 2 cut(s) 500, 534
BciT130I CCWGG 2 cut(s) 170, 549
BcnI CCSGG 1 cut(s) 201
BcoDI GTCTC 2 cut(s) 142, 260
BfaI CTAG 3 cut(s) 374, 575, 701
BfmI CTRYAG 2 cut(s) 246, 441
BglII AGATCT 2 cut(s) 57, 489
BisI GCNGC 6 cut(s) 71, 243, 246, 249, 273, 611
BlsI GCNGC 6 cut(s) 72, 244, 247, 250, 274, 612
Bme1390I CCNGG 3 cut(s) 170, 201, 549
Bme18I GGWCC 3 cut(s) 166, 314, 745
BmeT110I CYCGRG 1 cut(s) 188
BmgT120I GGNCC 4 cut(s) 166, 314, 563, 745
BmiI GGNNCC 3 cut(s) 177, 543, 747
BmrFI CCNGG 3 cut(s) 170, 201, 549
BpmI CTGGAG 2 cut(s) 191, 429
BpuMI CCSGG 1 cut(s) 201
Bsa29I ATCGAT 1 cut(s) 143
BsaHI GRCGYC 1 cut(s) 668
BsaI GGTCTC 1 cut(s) 142
BsaJI CCNNGG 2 cut(s) 102, 187
Bsc4I CCNNNNNNNGG 3 cut(s) 283, 532, 551
Bse1I ACTGG 3 cut(s) 252, 412, 725
Bse3DI GCAATG 1 cut(s) 210
BseBI CCWGG 2 cut(s) 170, 549
BseCI ATCGAT 1 cut(s) 143
BseDI CCNNGG 2 cut(s) 102, 187
BseGI GGATG 1 cut(s) 488
BseLI CCNNNNNNNGG 3 cut(s) 283, 532, 551
BseMI GCAATG 1 cut(s) 210
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 3 cut(s) 252, 412, 725
BseRI GAGGAG 3 cut(s) 54, 188, 492
BseXI GCAGC 5 cut(s) 82, 229, 232, 260, 622
Bsh1236I CGCG 1 cut(s) 75
BshFI GGCC 1 cut(s) 564
BshVI ATCGAT 1 cut(s) 143
BsiHKAI GWGCWC 1 cut(s) 311
BsiHKCI CYCGRG 1 cut(s) 188
BsiSI CCGG 2 cut(s) 201, 620
BslI CCNNNNNNNGG 3 cut(s) 283, 532, 551
BsmAI GTCTC 2 cut(s) 142, 260
BsnI GGCC 1 cut(s) 564
Bso31I GGTCTC 1 cut(s) 142
BsoBI CYCGRG 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 311
Bsp143I GATC 5 cut(s) 57, 144, 151, 181, 489
BspACI CCGC 6 cut(s) 75, 222, 273, 552, 639, 659
BspANI GGCC 1 cut(s) 564
BspCNI CTCAG 1 cut(s) 29
BspDI ATCGAT 1 cut(s) 143
BspFNI CGCG 1 cut(s) 75
BspHI TCATGA 1 cut(s) 499
BspLI GGNNCC 3 cut(s) 177, 543, 747
BspMAI CTGCAG 2 cut(s) 250, 445
BspTNI GGTCTC 1 cut(s) 142
BsrDI GCAATG 1 cut(s) 210
BsrI ACTGG 3 cut(s) 252, 412, 725
BssECI CCNNGG 2 cut(s) 102, 187
BssMI GATC 5 cut(s) 57, 144, 151, 181, 489
BssNI GRCGYC 1 cut(s) 668
Bst2UI CCWGG 2 cut(s) 170, 549
Bst4CI ACNGT 3 cut(s) 303, 559, 786
BstACI GRCGYC 1 cut(s) 668
BstC8I GCNNGC 4 cut(s) 398, 402, 441, 657
BstDEI CTNAG 1 cut(s) 16
BstF5I GGATG 1 cut(s) 488
BstFNI CGCG 1 cut(s) 75
BstHHI GCGC 2 cut(s) 75, 342
BstKTI GATC 5 cut(s) 60, 147, 154, 184, 492
BstMAI GTCTC 2 cut(s) 142, 260
BstMBI GATC 5 cut(s) 57, 144, 151, 181, 489
BstMWI GCNNNNNNNGC 3 cut(s) 221, 248, 665
BstNI CCWGG 2 cut(s) 170, 549
BstSCI CCNGG 3 cut(s) 168, 199, 547
BstSFI CTRYAG 2 cut(s) 246, 441
BstUI CGCG 1 cut(s) 75
BstV1I GCAGC 5 cut(s) 82, 229, 232, 260, 622
BstX2I RGATCY 2 cut(s) 57, 489
BstYI RGATCY 2 cut(s) 57, 489
Bsu15I ATCGAT 1 cut(s) 143
BsuRI GGCC 1 cut(s) 564
BsuTUI ATCGAT 1 cut(s) 143
BtsCI GGATG 1 cut(s) 488
BtsIMutI CAGTG 1 cut(s) 244
Cac8I GCNNGC 4 cut(s) 398, 402, 441, 657
CciI TCATGA 1 cut(s) 499
CfoI GCGC 2 cut(s) 75, 342
Cfr13I GGNCC 4 cut(s) 166, 314, 563, 745
ClaI ATCGAT 1 cut(s) 143
CseI GACGC 3 cut(s) 33, 351, 657
Csp6I GTAC 3 cut(s) 722, 739, 757
CspCI CAANNNNNGTGG 2 cut(s) 503, 538
CviAII CATG 2 cut(s) 500, 742
CviQI GTAC 3 cut(s) 722, 739, 757
DdeI CTNAG 1 cut(s) 16
DpnI GATC 5 cut(s) 59, 146, 153, 183, 491
DpnII GATC 5 cut(s) 57, 144, 151, 181, 489
DrdI GACNNNNNNGTC 1 cut(s) 321
DseDI GACNNNNNNGTC 1 cut(s) 321
EciI GGCGGA 1 cut(s) 567
Eco31I GGTCTC 1 cut(s) 142
Eco47I GGWCC 3 cut(s) 166, 314, 745
Eco88I CYCGRG 1 cut(s) 188
EcoRII CCWGG 2 cut(s) 168, 547
FaeI CATG 2 cut(s) 503, 745
FatI CATG 2 cut(s) 499, 741
FauI CCCGC 2 cut(s) 68, 229
FblI GTMKAC 1 cut(s) 671
Fnu4HI GCNGC 6 cut(s) 71, 243, 246, 249, 273, 611
FokI GGATG 1 cut(s) 495
Fsp4HI GCNGC 6 cut(s) 71, 243, 246, 249, 273, 611
FspBI CTAG 3 cut(s) 374, 575, 701
GlaI GCGC 2 cut(s) 74, 341
GluI GCNGC 6 cut(s) 71, 243, 246, 249, 273, 611
GsuI CTGGAG 2 cut(s) 191, 429
HaeIII GGCC 1 cut(s) 564
HapII CCGG 2 cut(s) 201, 620
HgaI GACGC 3 cut(s) 33, 351, 657
HhaI GCGC 2 cut(s) 75, 342
Hin1I GRCGYC 1 cut(s) 668
Hin1II CATG 2 cut(s) 503, 745
Hin6I GCGC 2 cut(s) 73, 340
HinP1I GCGC 2 cut(s) 73, 340
HpaII CCGG 2 cut(s) 201, 620
HphI GGTGA 2 cut(s) 139, 460
Hpy166II GTNNAC 2 cut(s) 672, 759
Hpy188I TCNGA 4 cut(s) 49, 103, 418, 489
Hpy188III TCNNGA 5 cut(s) 61, 190, 312, 333, 500
Hpy8I GTNNAC 2 cut(s) 672, 759
Hpy99I CGWCG 1 cut(s) 49
HpyAV CCTTC 2 cut(s) 330, 698
HpyCH4III ACNGT 3 cut(s) 303, 559, 786
HpyCH4V TGCA 4 cut(s) 29, 215, 248, 443
HpyF10VI GCNNNNNNNGC 3 cut(s) 221, 248, 665
HpyF3I CTNAG 1 cut(s) 16
Hsp92I GRCGYC 1 cut(s) 668
Hsp92II CATG 2 cut(s) 503, 745
HspAI GCGC 2 cut(s) 73, 340
Kzo9I GATC 5 cut(s) 57, 144, 151, 181, 489
LmnI GCTCC 4 cut(s) 41, 104, 175, 359
Lsp1109I GCAGC 5 cut(s) 82, 229, 232, 260, 622
MaeI CTAG 3 cut(s) 374, 575, 701
MaeIII GTNAC 3 cut(s) 466, 692, 727
MalI GATC 5 cut(s) 59, 146, 153, 183, 491
MboI GATC 5 cut(s) 57, 144, 151, 181, 489
MboII GAAGA 1 cut(s) 444
MflI RGATCY 2 cut(s) 57, 489
MhlI GDGCHC 1 cut(s) 311
MluCI AATT 4 cut(s) 10, 32, 266, 390
MmeI TCCRAC 1 cut(s) 27
MnlI CCTC 9 cut(s) 32, 97, 166, 197, 396, 470, 473, 644, 658
MseI TTAA 1 cut(s) 605
MslI CAYNNNNRTG 1 cut(s) 702
MspI CCGG 2 cut(s) 201, 620
MspR9I CCNGG 3 cut(s) 170, 201, 549
MvaI CCWGG 2 cut(s) 170, 549
MvnI CGCG 1 cut(s) 75
MwoI GCNNNNNNNGC 3 cut(s) 221, 248, 665
NciI CCSGG 1 cut(s) 201
NdeII GATC 5 cut(s) 57, 144, 151, 181, 489
NlaIII CATG 2 cut(s) 503, 745
NlaIV GGNNCC 3 cut(s) 177, 543, 747
NmuCI GTSAC 1 cut(s) 466
PagI TCATGA 1 cut(s) 499
PcsI WCGNNNNNNNCGW 1 cut(s) 331
PfoI TCCNGGA 1 cut(s) 168
PkrI GCNGC 6 cut(s) 72, 244, 247, 250, 274, 612
Psp6I CCWGG 2 cut(s) 168, 547
PspGI CCWGG 2 cut(s) 168, 547
PspN4I GGNNCC 3 cut(s) 177, 543, 747
PspPI GGNCC 4 cut(s) 166, 314, 563, 745
PstI CTGCAG 2 cut(s) 250, 445
PsuI RGATCY 2 cut(s) 57, 489
RsaI GTAC 3 cut(s) 723, 740, 758
RsaNI GTAC 3 cut(s) 722, 739, 757
RseI CAYNNNNRTG 1 cut(s) 702
SaqAI TTAA 1 cut(s) 605
SatI GCNGC 6 cut(s) 71, 243, 246, 249, 273, 611
Sau3AI GATC 5 cut(s) 57, 144, 151, 181, 489
Sau96I GGNCC 4 cut(s) 166, 314, 563, 745
ScrFI CCNGG 3 cut(s) 170, 201, 549
SduI GDGCHC 1 cut(s) 311
SetI ASST 9 cut(s) 101, 108, 138, 325, 388, 550, 677, 702, 775
SfcI CTRYAG 2 cut(s) 246, 441
SinI GGWCC 3 cut(s) 166, 314, 745
SmiMI CAYNNNNRTG 1 cut(s) 702
Sse9I AATT 4 cut(s) 10, 32, 266, 390
SsiI CCGC 6 cut(s) 75, 222, 273, 552, 639, 659
SspI AATATT 1 cut(s) 710
SspMI CTAG 3 cut(s) 374, 575, 701
StyD4I CCNGG 3 cut(s) 168, 199, 547
TaaI ACNGT 3 cut(s) 303, 559, 786
TaqI TCGA 5 cut(s) 23, 62, 143, 334, 346
TasI AATT 4 cut(s) 10, 32, 266, 390
TatI WGTACW 2 cut(s) 738, 756
TauI GCSGC 1 cut(s) 275
Tru1I TTAA 1 cut(s) 605
Tru9I TTAA 1 cut(s) 605
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 1 cut(s) 466
TseI GCWGC 5 cut(s) 70, 242, 245, 248, 610
Tsp45I GTSAC 1 cut(s) 466
TspDTI ATGAA 2 cut(s) 101, 720
TspRI CASTG 1 cut(s) 244
VpaK11BI GGWCC 3 cut(s) 166, 314, 745
XmiI GTMKAC 1 cut(s) 671
XspI CTAG 3 cut(s) 374, 575, 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.