Rh2AG403900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000520
Physical Location & Seq
Forward (+)
60114284 .. 60144550
30267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG403900.1

Sequence Viewer

Length: 960 bp
ATGGACAGCAATTTCTCAGGGGCGATTGCAAAATTGAGAGGAGCGTCGGACGATGAGATCTCGATGGGGCAGCGCGGGGATTTGATGAAGCTCAATATCTCCGAGGAGCCAGATCGCCTCGGGAAAAAACCCGGCAAGGACATTCCACACCCCGCAAAACCAGACATCAGTGCTGCTGCAGCCAGTCTCAACCCTAAATTAGCCGCCCTTTCTCTGGGAAACCGAGGGAAGCGGTTGTGCTCTGGACCTAAAGGTCGTATTTCTCGAAGGCGCAATCGAAAAGATAAGGGAGCGTCCGTTGGTCTAGGCATCAAGTCCAAAGAACCAAAGGCTACTGGAGTATCAGACAAAAACAATAAAAAAGTGGCTGCAGTTGCTTCTTCTACTTCTGTCGTCACCGAAAGAGGAGGATGTCAGATCTGTGGTCATGATCACCAGCACATTCGTTGCCCATACTTGGAGTTGGTTCCACCTGGCGGAACTGTTGGCCCTGACTATCTAGTAGTATGTGGCGAATGTGGTTATGAGTTAAAGCAGCCTATTCCGGCTTCTTGTTGGTCGTGCGGTTATTGGGGAGGACGTGCGGTGGAGGCGTCTACCTTTGATTATAGCCTTCGTTACCACCTAGATGAATATTATATAGAAGTACCAGTTACGGCAGAGTACATGGACCCAGACAATTACACAGAACAAAAACCTGTAATGGCACAGTCCTCATGTAGAATTTTGTTGTTGCAGAGCCAGATCGCCTCGGGAAAAAACCCGGCAAGGACATTGCACACCCCGCAAAACCAGACATCAGTGCTGCTGCAGCCACCCTTTCTCTGGGAAACAAAGGCTCTTGATTACACATTGGGCATCTCCTTCCACTTCAATCTTCTTAAACTCAAAGATGAACTTAACTTGAGACCAGAAAGCAGAGCCTGTGTTTCTAAAGCTTTGGTTTGTATATTCCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

319

Amino Acids

34.79

Weight (kDa)

8.95

Isoelectric Point (pI)

43.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 252
AccI GTMKAC 1 cut(s) 596
AccII CGCG 1 cut(s) 75
AciI CCGC 8 cut(s) 75, 153, 204, 232, 477, 564, 584, 785
AcsI RAATTY 1 cut(s) 723
AcyI GRCGYC 1 cut(s) 593
AfaI GTAC 2 cut(s) 648, 665
AfiI CCNNNNNNNGG 4 cut(s) 214, 457, 476, 825
AgsI TTSAA 1 cut(s) 874
AjiI CACGTC 1 cut(s) 581
AjnI CCWGG 1 cut(s) 472
AluBI AGCT 2 cut(s) 91, 938
AluI AGCT 2 cut(s) 91, 938
Alw21I GWGCWC 1 cut(s) 242
Alw26I GTCTC 2 cut(s) 191, 901
AlwNI CAGNNNCTG 1 cut(s) 924
Ama87I CYCGRG 2 cut(s) 119, 751
AoxI GGCC 1 cut(s) 487
ApeKI GCWGC 9 cut(s) 70, 173, 176, 179, 368, 535, 805, 808, 811
ApoI RAATTY 1 cut(s) 723
AspLEI GCGC 2 cut(s) 75, 273
AspS9I GGNCC 3 cut(s) 245, 488, 670
AsuC2I CCSGG 2 cut(s) 132, 764
AsuHPI GGTGA 2 cut(s) 388, 425
AvaI CYCGRG 2 cut(s) 119, 751
AvaII GGWCC 2 cut(s) 245, 670
BaeI ACNNNNGTAYC 2 cut(s) 324, 357
Bbv12I GWGCWC 1 cut(s) 242
BbvI GCAGC 9 cut(s) 82, 160, 163, 191, 355, 547, 792, 795, 823
BccI CCATC 1 cut(s) 58
BceAI ACGGC 1 cut(s) 672
BciT130I CCWGG 1 cut(s) 474
BclI TGATCA 1 cut(s) 430
BcnI CCSGG 2 cut(s) 132, 764
BcoDI GTCTC 2 cut(s) 191, 901
BfaI CTAG 3 cut(s) 305, 500, 626
BfmI CTRYAG 3 cut(s) 177, 369, 809
BglII AGATCT 2 cut(s) 57, 417
Bme1390I CCNGG 3 cut(s) 132, 474, 764
Bme18I GGWCC 2 cut(s) 245, 670
BmeT110I CYCGRG 2 cut(s) 119, 751
BmgBI CACGTC 1 cut(s) 581
BmgT120I GGNCC 3 cut(s) 245, 488, 670
BmiI GGNNCC 3 cut(s) 108, 468, 672
BmrFI CCNGG 3 cut(s) 132, 474, 764
BmsI GCATC 2 cut(s) 318, 867
BpmI CTGGAG 1 cut(s) 357
BpuEI CTTGAG 1 cut(s) 925
BpuMI CCSGG 2 cut(s) 132, 764
BsaHI GRCGYC 1 cut(s) 593
BsaI GGTCTC 1 cut(s) 901
BsaJI CCNNGG 4 cut(s) 102, 118, 223, 750
BsaXI ACNNNNNCTCC 2 cut(s) 282, 312
Bsc4I CCNNNNNNNGG 4 cut(s) 214, 457, 476, 825
Bse1I ACTGG 3 cut(s) 183, 340, 650
Bse3DI GCAATG 1 cut(s) 773
BseBI CCWGG 1 cut(s) 474
BseDI CCNNGG 4 cut(s) 102, 118, 223, 750
BseGI GGATG 1 cut(s) 416
BseLI CCNNNNNNNGG 4 cut(s) 214, 457, 476, 825
BseMI GCAATG 1 cut(s) 773
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 3 cut(s) 183, 340, 650
BseRI GAGGAG 3 cut(s) 54, 119, 420
BseXI GCAGC 9 cut(s) 82, 160, 163, 191, 355, 547, 792, 795, 823
Bsh1236I CGCG 1 cut(s) 75
BshFI GGCC 1 cut(s) 489
BsiHKAI GWGCWC 1 cut(s) 242
BsiHKCI CYCGRG 2 cut(s) 119, 751
BsiSI CCGG 3 cut(s) 132, 545, 764
BslI CCNNNNNNNGG 4 cut(s) 214, 457, 476, 825
BsmAI GTCTC 2 cut(s) 191, 901
BsnI GGCC 1 cut(s) 489
Bso31I GGTCTC 1 cut(s) 901
BsoBI CYCGRG 2 cut(s) 119, 751
Bsp1286I GDGCHC 1 cut(s) 242
Bsp143I GATC 5 cut(s) 57, 112, 417, 430, 744
BspACI CCGC 8 cut(s) 75, 153, 204, 232, 477, 564, 584, 785
BspANI GGCC 1 cut(s) 489
BspCNI CTCAG 1 cut(s) 29
BspFNI CGCG 1 cut(s) 75
BspHI TCATGA 1 cut(s) 427
BspLI GGNNCC 3 cut(s) 108, 468, 672
BspMAI CTGCAG 3 cut(s) 181, 373, 813
BspTNI GGTCTC 1 cut(s) 901
BsrDI GCAATG 1 cut(s) 773
BsrI ACTGG 3 cut(s) 183, 340, 650
BssECI CCNNGG 4 cut(s) 102, 118, 223, 750
BssMI GATC 5 cut(s) 57, 112, 417, 430, 744
BssNI GRCGYC 1 cut(s) 593
Bst2UI CCWGG 1 cut(s) 474
Bst4CI ACNGT 2 cut(s) 484, 711
BstACI GRCGYC 1 cut(s) 593
BstDEI CTNAG 1 cut(s) 16
BstF5I GGATG 1 cut(s) 416
BstFNI CGCG 1 cut(s) 75
BstHHI GCGC 2 cut(s) 75, 273
BstKTI GATC 5 cut(s) 60, 115, 420, 433, 747
BstMAI GTCTC 2 cut(s) 191, 901
BstMBI GATC 5 cut(s) 57, 112, 417, 430, 744
BstMWI GCNNNNNNNGC 5 cut(s) 179, 374, 590, 784, 811
BstNI CCWGG 1 cut(s) 474
BstSCI CCNGG 3 cut(s) 130, 472, 762
BstSFI CTRYAG 3 cut(s) 177, 369, 809
BstUI CGCG 1 cut(s) 75
BstV1I GCAGC 9 cut(s) 82, 160, 163, 191, 355, 547, 792, 795, 823
BstX2I RGATCY 2 cut(s) 57, 417
BstYI RGATCY 2 cut(s) 57, 417
BsuRI GGCC 1 cut(s) 489
BtrI CACGTC 1 cut(s) 581
BtsCI GGATG 1 cut(s) 416
BtsIMutI CAGTG 2 cut(s) 175, 807
CaiI CAGNNNCTG 1 cut(s) 924
CciI TCATGA 1 cut(s) 427
CfoI GCGC 2 cut(s) 75, 273
Cfr13I GGNCC 3 cut(s) 245, 488, 670
CseI GACGC 3 cut(s) 33, 282, 582
Csp6I GTAC 2 cut(s) 647, 664
CviAII CATG 3 cut(s) 428, 667, 717
CviQI GTAC 2 cut(s) 647, 664
DdeI CTNAG 1 cut(s) 16
DpnI GATC 5 cut(s) 59, 114, 419, 432, 746
DpnII GATC 5 cut(s) 57, 112, 417, 430, 744
DrdI GACNNNNNNGTC 1 cut(s) 252
DseDI GACNNNNNNGTC 1 cut(s) 252
EciI GGCGGA 1 cut(s) 492
Eco31I GGTCTC 1 cut(s) 901
Eco47I GGWCC 2 cut(s) 245, 670
Eco88I CYCGRG 2 cut(s) 119, 751
EcoRII CCWGG 1 cut(s) 472
FaeI CATG 3 cut(s) 431, 670, 720
FalI AAGNNNNNCTT 2 cut(s) 882, 914
FatI CATG 3 cut(s) 427, 666, 716
FauI CCCGC 3 cut(s) 68, 160, 792
FbaI TGATCA 1 cut(s) 430
FblI GTMKAC 1 cut(s) 596
FokI GGATG 1 cut(s) 423
FspBI CTAG 3 cut(s) 305, 500, 626
GlaI GCGC 2 cut(s) 74, 272
GsuI CTGGAG 1 cut(s) 357
HaeIII GGCC 1 cut(s) 489
HapII CCGG 3 cut(s) 132, 545, 764
HgaI GACGC 3 cut(s) 33, 282, 582
HhaI GCGC 2 cut(s) 75, 273
Hin1I GRCGYC 1 cut(s) 593
Hin1II CATG 3 cut(s) 431, 670, 720
Hin6I GCGC 2 cut(s) 73, 271
HinP1I GCGC 2 cut(s) 73, 271
HindIII AAGCTT 1 cut(s) 936
HpaII CCGG 3 cut(s) 132, 545, 764
HphI GGTGA 2 cut(s) 388, 425
Hpy166II GTNNAC 1 cut(s) 597
Hpy188I TCNGA 4 cut(s) 49, 103, 346, 417
Hpy188III TCNNGA 7 cut(s) 61, 121, 243, 264, 428, 753, 842
Hpy8I GTNNAC 1 cut(s) 597
Hpy99I CGWCG 1 cut(s) 49
HpyAV CCTTC 3 cut(s) 261, 623, 874
HpyCH4III ACNGT 2 cut(s) 484, 711
HpyCH4IV ACGT 1 cut(s) 580
HpyCH4V TGCA 6 cut(s) 29, 179, 371, 736, 778, 811
HpyF10VI GCNNNNNNNGC 5 cut(s) 179, 374, 590, 784, 811
HpyF3I CTNAG 1 cut(s) 16
HpySE526I ACGT 1 cut(s) 580
Hsp92I GRCGYC 1 cut(s) 593
Hsp92II CATG 3 cut(s) 431, 670, 720
HspAI GCGC 2 cut(s) 73, 271
Ksp22I TGATCA 1 cut(s) 430
Kzo9I GATC 5 cut(s) 57, 112, 417, 430, 744
LmnI GCTCC 3 cut(s) 41, 106, 290
Lsp1109I GCAGC 9 cut(s) 82, 160, 163, 191, 355, 547, 792, 795, 823
LweI GCATC 2 cut(s) 318, 867
MaeI CTAG 3 cut(s) 305, 500, 626
MaeII ACGT 1 cut(s) 580
MaeIII GTNAC 3 cut(s) 394, 617, 652
MalI GATC 5 cut(s) 59, 114, 419, 432, 746
MboI GATC 5 cut(s) 57, 112, 417, 430, 744
MboII GAAGA 2 cut(s) 372, 869
MflI RGATCY 2 cut(s) 57, 417
MhlI GDGCHC 1 cut(s) 242
MluCI AATT 5 cut(s) 10, 32, 197, 679, 723
MmeI TCCRAC 1 cut(s) 27
MseI TTAA 3 cut(s) 530, 882, 900
MslI CAYNNNNRTG 1 cut(s) 627
MspI CCGG 3 cut(s) 132, 545, 764
MspR9I CCNGG 3 cut(s) 132, 474, 764
MvaI CCWGG 1 cut(s) 474
MvnI CGCG 1 cut(s) 75
MwoI GCNNNNNNNGC 5 cut(s) 179, 374, 590, 784, 811
NciI CCSGG 2 cut(s) 132, 764
NdeII GATC 5 cut(s) 57, 112, 417, 430, 744
NlaIII CATG 3 cut(s) 431, 670, 720
NlaIV GGNNCC 3 cut(s) 108, 468, 672
NmuCI GTSAC 1 cut(s) 394
PagI TCATGA 1 cut(s) 427
PcsI WCGNNNNNNNCGW 1 cut(s) 262
Psp6I CCWGG 1 cut(s) 472
PspGI CCWGG 1 cut(s) 472
PspN4I GGNNCC 3 cut(s) 108, 468, 672
PspPI GGNCC 3 cut(s) 245, 488, 670
PstI CTGCAG 3 cut(s) 181, 373, 813
PstNI CAGNNNCTG 1 cut(s) 924
PsuI RGATCY 2 cut(s) 57, 417
RsaI GTAC 2 cut(s) 648, 665
RsaNI GTAC 2 cut(s) 647, 664
RseI CAYNNNNRTG 1 cut(s) 627
SaqAI TTAA 3 cut(s) 530, 882, 900
Sau3AI GATC 5 cut(s) 57, 112, 417, 430, 744
Sau96I GGNCC 3 cut(s) 245, 488, 670
ScrFI CCNGG 3 cut(s) 132, 474, 764
SduI GDGCHC 1 cut(s) 242
SetI ASST 9 cut(s) 93, 250, 256, 475, 583, 602, 627, 700, 940
SfaNI GCATC 2 cut(s) 318, 867
SfcI CTRYAG 3 cut(s) 177, 369, 809
SinI GGWCC 2 cut(s) 245, 670
SmiMI CAYNNNNRTG 1 cut(s) 627
SmlI CTYRAG 1 cut(s) 904
SmoI CTYRAG 1 cut(s) 904
Sse9I AATT 5 cut(s) 10, 32, 197, 679, 723
SsiI CCGC 8 cut(s) 75, 153, 204, 232, 477, 564, 584, 785
SspI AATATT 1 cut(s) 635
SspMI CTAG 3 cut(s) 305, 500, 626
StyD4I CCNGG 3 cut(s) 130, 472, 762
TaaI ACNGT 2 cut(s) 484, 711
TaiI ACGT 1 cut(s) 583
TaqI TCGA 3 cut(s) 62, 265, 277
TasI AATT 5 cut(s) 10, 32, 197, 679, 723
TatI WGTACW 1 cut(s) 663
TauI GCSGC 1 cut(s) 206
Tru1I TTAA 3 cut(s) 530, 882, 900
Tru9I TTAA 3 cut(s) 530, 882, 900
TscAI CASTG 2 cut(s) 175, 807
TseFI GTSAC 1 cut(s) 394
TseI GCWGC 9 cut(s) 70, 173, 176, 179, 368, 535, 805, 808, 811
Tsp45I GTSAC 1 cut(s) 394
TspDTI ATGAA 3 cut(s) 101, 645, 909
TspGWI ACGGA 1 cut(s) 286
TspRI CASTG 2 cut(s) 175, 807
VpaK11BI GGWCC 2 cut(s) 245, 670
XapI RAATTY 1 cut(s) 723
XcmI CCANNNNNNNNNTGG 1 cut(s) 822
XmiI GTMKAC 1 cut(s) 596
XspI CTAG 3 cut(s) 305, 500, 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.