MD05G1031200.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0000520
Physical Location & Seq
Forward (+)
5076864 .. 5077926
1063 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1031200.v1.1.491

Sequence Viewer

Length: 225 bp
ATGAAAAAGTTGGTGCATACCGACTATTCCAGATTTCTCCAAGAAAGAGACAAAGCCATGTACCGCCTATCCAAAGACAGGAATCGCCGACCCGGATCTAAGGCCAAGCGCCTCCCGGAAACGGAATTAGGATCCGGTCCAGGCCAACCACCGAAGCACCTAGATGATTCAGGTGAGAAGAAAGAAGAAGAGGCTTTGGATGACTCTGACTCAACTACAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.46

Weight (kDa)

8.01

Isoelectric Point (pI)

60.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 64
AclWI GGATC 3 cut(s) 103, 126, 139
AfaI GTAC 1 cut(s) 62
AfiI CCNNNNNNNGG 2 cut(s) 78, 121
AjnI CCWGG 1 cut(s) 139
Alw26I GTCTC 1 cut(s) 42
AlwI GGATC 3 cut(s) 103, 126, 139
AoxI GGCC 2 cut(s) 102, 142
AspLEI GCGC 1 cut(s) 111
AspS9I GGNCC 1 cut(s) 137
AsuC2I CCSGG 2 cut(s) 93, 116
AsuHPI GGTGA 1 cut(s) 185
AvaII GGWCC 1 cut(s) 137
BamHI GGATCC 1 cut(s) 131
BciT130I CCWGG 1 cut(s) 141
BcnI CCSGG 2 cut(s) 93, 116
BcoDI GTCTC 1 cut(s) 42
BfaI CTAG 1 cut(s) 161
BfoI RGCGCY 1 cut(s) 112
Bme1390I CCNGG 3 cut(s) 93, 116, 141
Bme18I GGWCC 1 cut(s) 137
BmgT120I GGNCC 1 cut(s) 137
BmiI GGNNCC 1 cut(s) 133
BmrFI CCNGG 3 cut(s) 93, 116, 141
BpuMI CCSGG 2 cut(s) 93, 116
BsaWI WCCGGW 1 cut(s) 134
Bsc4I CCNNNNNNNGG 2 cut(s) 78, 121
BseBI CCWGG 1 cut(s) 141
BseGI GGATG 1 cut(s) 205
BseLI CCNNNNNNNGG 2 cut(s) 78, 121
BshFI GGCC 2 cut(s) 104, 144
BsiSI CCGG 3 cut(s) 93, 116, 135
BslI CCNNNNNNNGG 2 cut(s) 78, 121
BsmAI GTCTC 1 cut(s) 42
BsnI GGCC 2 cut(s) 104, 144
Bsp143I GATC 2 cut(s) 95, 131
BspACI CCGC 1 cut(s) 64
BspANI GGCC 2 cut(s) 104, 144
BspLI GGNNCC 1 cut(s) 133
BspPI GGATC 3 cut(s) 103, 126, 139
BssMI GATC 2 cut(s) 95, 131
Bst2UI CCWGG 1 cut(s) 141
Bst6I CTCTTC 1 cut(s) 183
BstDEI CTNAG 1 cut(s) 99
BstF5I GGATG 1 cut(s) 205
BstH2I RGCGCY 1 cut(s) 112
BstHHI GCGC 1 cut(s) 111
BstKTI GATC 2 cut(s) 98, 134
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 2 cut(s) 95, 131
BstNI CCWGG 1 cut(s) 141
BstSCI CCNGG 3 cut(s) 91, 114, 139
BstX2I RGATCY 2 cut(s) 95, 131
BstYI RGATCY 2 cut(s) 95, 131
BsuRI GGCC 2 cut(s) 104, 144
BtsCI GGATG 1 cut(s) 205
CfoI GCGC 1 cut(s) 111
Cfr13I GGNCC 1 cut(s) 137
Csp6I GTAC 1 cut(s) 61
CviAII CATG 1 cut(s) 58
CviJI RGCY 4 cut(s) 56, 104, 144, 194
CviKI_1 RGCY 4 cut(s) 56, 104, 144, 194
CviQI GTAC 1 cut(s) 61
DdeI CTNAG 1 cut(s) 99
DpnI GATC 2 cut(s) 97, 133
DpnII GATC 2 cut(s) 95, 131
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
Eco47I GGWCC 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 139
FaeI CATG 1 cut(s) 61
FaiI YATR 2 cut(s) 18, 59
FatI CATG 1 cut(s) 57
FokI GGATG 1 cut(s) 212
FspBI CTAG 1 cut(s) 161
GlaI GCGC 1 cut(s) 110
HaeII RGCGCY 1 cut(s) 112
HaeIII GGCC 2 cut(s) 104, 144
HapII CCGG 3 cut(s) 93, 116, 135
HhaI GCGC 1 cut(s) 111
Hin1II CATG 1 cut(s) 61
Hin6I GCGC 1 cut(s) 109
HinP1I GCGC 1 cut(s) 109
HinfI GANTC 4 cut(s) 82, 167, 203, 209
HpaII CCGG 3 cut(s) 93, 116, 135
HphI GGTGA 1 cut(s) 185
Hpy188I TCNGA 1 cut(s) 208
Hpy188III TCNNGA 1 cut(s) 30
HpyCH4V TGCA 1 cut(s) 16
HpyF3I CTNAG 1 cut(s) 99
Hsp92II CATG 1 cut(s) 61
HspAI GCGC 1 cut(s) 109
Kzo9I GATC 2 cut(s) 95, 131
LpnPI CCDG 8 cut(s) 43, 64, 106, 126, 129, 148, 153, 156
MaeI CTAG 1 cut(s) 161
MalI GATC 2 cut(s) 97, 133
MboI GATC 2 cut(s) 95, 131
MboII GAAGA 3 cut(s) 190, 197, 200
MflI RGATCY 2 cut(s) 95, 131
MluCI AATT 1 cut(s) 125
MlyI GAGTC 2 cut(s) 197, 203
MnlI CCTC 2 cut(s) 122, 184
MslI CAYNNNNRTG 1 cut(s) 162
MspI CCGG 3 cut(s) 93, 116, 135
MspR9I CCNGG 3 cut(s) 93, 116, 141
MvaI CCWGG 1 cut(s) 141
NciI CCSGG 2 cut(s) 93, 116
NdeII GATC 2 cut(s) 95, 131
NlaIII CATG 1 cut(s) 61
NlaIV GGNNCC 1 cut(s) 133
PfeI GAWTC 2 cut(s) 82, 167
PfoI TCCNGGA 1 cut(s) 114
PleI GAGTC 2 cut(s) 197, 203
PpsI GAGTC 2 cut(s) 197, 203
Psp6I CCWGG 1 cut(s) 139
PspGI CCWGG 1 cut(s) 139
PspN4I GGNNCC 1 cut(s) 133
PspPI GGNCC 1 cut(s) 137
PsuI RGATCY 2 cut(s) 95, 131
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
RseI CAYNNNNRTG 1 cut(s) 162
Sau3AI GATC 2 cut(s) 95, 131
Sau96I GGNCC 1 cut(s) 137
SchI GAGTC 2 cut(s) 197, 203
ScrFI CCNGG 3 cut(s) 93, 116, 141
SetI ASST 2 cut(s) 162, 175
SinI GGWCC 1 cut(s) 137
SmiMI CAYNNNNRTG 1 cut(s) 162
Sse9I AATT 1 cut(s) 125
SsiI CCGC 1 cut(s) 64
SspMI CTAG 1 cut(s) 161
StyD4I CCNGG 3 cut(s) 91, 114, 139
TasI AATT 1 cut(s) 125
TfiI GAWTC 2 cut(s) 82, 167
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 137
VpaK11BI GGWCC 1 cut(s) 137
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.