Rh2CG390000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000520
Physical Location & Seq
Forward (+)
53088056 .. 53094812
6757 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG390000.1

Sequence Viewer

Length: 981 bp
ATGGACAGCAATTTCTCAGGGGCGATTGCAAAATTGAGAGGAGCGTCGGACGATGAGATCTCGATGGGGCAGCGCGGGGATTTGATGAAGCTCAATATCTCCGAGGAGCCAGATCGCCTCGGGAAAAAACCCGGCAAGGACATTCCACACCCCGCAAAACCAGACATCAGTGCTGCTGCAGCCAGTCTCAACCCTAAATTAGCCGCCCTTTCTCTGGGAAACCGAGGGAAGCGGTTGTGCTCTGGACCTAAAGGTCGTATTTCTCGAAGGCGCAATCGAAAAGATAAGGGAGCGTCCGTTGGTCTAGGCATCAAGTCCAAAGAACCAAAGGCTACTGGAGTATCAGACAAAAACAATAAAAAAGTGGCTGCAGTTGCTTCTTCTACTTCTGTCGTCACCGAAAGAGGAGGATGTCAGATCTGTGGTCATGATCACCAGCACATTCGTTGCCCATACTTGGAGTTGGTTCCACCTGGCGGAACTGTTGGCCCTGACTATCTAGTAGTATGTGGCGAATGTGGTTATGAGTTAAAGCAGCCTATTCCGGCTTCTTGTTGGTCGTGCGGTTATTGGGGAGGACGTGCGGTGGAGGCGTCTACCTTTGATTATAGCCTTCGTTACCACCTAGATGAATATTATATAGAAGTACCAGTTACGGCAGAGTACATGGACCCAGACAATTACACAGAACAAAAACCTGTAATGGCACAGTCCTCATGGAGAGACATTCACCCGAGCACCAAGCCCTTAGATATGGACATTTCTGGAATCACAGCGAGAGCAGCAGCCGGCGGTAAGGAGAAGGCGAAGGAGAAGCCTGAAGAAGGGTGTCGGATTTGTGGTGATGACCACCAACACATTCGTTGCCCGTACTTGGAGTGTGTTCCACCTGGTGCAACTGTTGGCCCTGACTATCTAGTAAAATGTGACTTGTGTCGTTATGAGTTATTCCAGCCTACTGCGACTCATTGTTGGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

326

Amino Acids

35.47

Weight (kDa)

8.1

Isoelectric Point (pI)

39.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 252
AccI GTMKAC 1 cut(s) 596
AccII CGCG 1 cut(s) 75
AciI CCGC 8 cut(s) 75, 153, 204, 232, 477, 564, 584, 792
AcuI CTGAAG 1 cut(s) 840
AcyI GRCGYC 1 cut(s) 593
AdeI CACNNNGTG 1 cut(s) 893
AfaI GTAC 3 cut(s) 648, 665, 872
AfiI CCNNNNNNNGG 5 cut(s) 214, 457, 476, 824, 874
AjiI CACGTC 1 cut(s) 581
AjnI CCWGG 2 cut(s) 472, 889
AluBI AGCT 1 cut(s) 91
AluI AGCT 1 cut(s) 91
Alw21I GWGCWC 2 cut(s) 242, 740
Alw26I GTCTC 2 cut(s) 191, 717
Ama87I CYCGRG 2 cut(s) 119, 733
AoxI GGCC 2 cut(s) 487, 904
ApeKI GCWGC 8 cut(s) 70, 173, 176, 179, 368, 535, 782, 785
AspLEI GCGC 2 cut(s) 75, 273
AspS9I GGNCC 4 cut(s) 245, 488, 670, 905
AsuC2I CCSGG 1 cut(s) 132
AsuHPI GGTGA 4 cut(s) 388, 425, 722, 854
AvaI CYCGRG 2 cut(s) 119, 733
AvaII GGWCC 2 cut(s) 245, 670
BaeI ACNNNNGTAYC 2 cut(s) 324, 357
Bbv12I GWGCWC 2 cut(s) 242, 740
BbvI GCAGC 8 cut(s) 82, 160, 163, 191, 355, 547, 794, 797
BccI CCATC 1 cut(s) 58
BceAI ACGGC 1 cut(s) 672
BciT130I CCWGG 2 cut(s) 474, 891
BclI TGATCA 1 cut(s) 430
BcnI CCSGG 1 cut(s) 132
BcoDI GTCTC 2 cut(s) 191, 717
BfaI CTAG 4 cut(s) 305, 500, 626, 917
BfmI CTRYAG 2 cut(s) 177, 369
BglII AGATCT 2 cut(s) 57, 417
BisI GCNGC 9 cut(s) 71, 174, 177, 180, 204, 369, 536, 783, 786
BlsI GCNGC 9 cut(s) 72, 175, 178, 181, 205, 370, 537, 784, 787
Bme1390I CCNGG 3 cut(s) 132, 474, 891
Bme18I GGWCC 2 cut(s) 245, 670
BmeT110I CYCGRG 2 cut(s) 119, 733
BmgBI CACGTC 1 cut(s) 581
BmgT120I GGNCC 4 cut(s) 245, 488, 670, 905
BmiI GGNNCC 3 cut(s) 108, 468, 672
BmrFI CCNGG 3 cut(s) 132, 474, 891
BmsI GCATC 1 cut(s) 318
BoxI GACNNNNGTC 1 cut(s) 933
BpmI CTGGAG 1 cut(s) 357
BpuMI CCSGG 1 cut(s) 132
BsaHI GRCGYC 1 cut(s) 593
BsaJI CCNNGG 3 cut(s) 102, 118, 223
BsaXI ACNNNNNCTCC 2 cut(s) 282, 312
Bsc4I CCNNNNNNNGG 5 cut(s) 214, 457, 476, 824, 874
Bse118I RCCGGY 1 cut(s) 788
Bse1I ACTGG 3 cut(s) 183, 340, 650
BseBI CCWGG 2 cut(s) 474, 891
BseDI CCNNGG 3 cut(s) 102, 118, 223
BseGI GGATG 2 cut(s) 416, 981
BseLI CCNNNNNNNGG 5 cut(s) 214, 457, 476, 824, 874
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 3 cut(s) 183, 340, 650
BseRI GAGGAG 3 cut(s) 54, 119, 420
BseXI GCAGC 8 cut(s) 82, 160, 163, 191, 355, 547, 794, 797
Bsh1236I CGCG 1 cut(s) 75
BshFI GGCC 2 cut(s) 489, 906
BsiHKAI GWGCWC 2 cut(s) 242, 740
BsiHKCI CYCGRG 2 cut(s) 119, 733
BsiSI CCGG 3 cut(s) 132, 545, 789
BslI CCNNNNNNNGG 5 cut(s) 214, 457, 476, 824, 874
BsmAI GTCTC 2 cut(s) 191, 717
BsnI GGCC 2 cut(s) 489, 906
BsoBI CYCGRG 2 cut(s) 119, 733
Bsp1286I GDGCHC 2 cut(s) 242, 740
Bsp143I GATC 4 cut(s) 57, 112, 417, 430
BspACI CCGC 8 cut(s) 75, 153, 204, 232, 477, 564, 584, 792
BspANI GGCC 2 cut(s) 489, 906
BspCNI CTCAG 1 cut(s) 29
BspFNI CGCG 1 cut(s) 75
BspHI TCATGA 1 cut(s) 427
BspLI GGNNCC 3 cut(s) 108, 468, 672
BspMAI CTGCAG 2 cut(s) 181, 373
BsrFI RCCGGY 1 cut(s) 788
BsrI ACTGG 3 cut(s) 183, 340, 650
BssAI RCCGGY 1 cut(s) 788
BssECI CCNNGG 3 cut(s) 102, 118, 223
BssMI GATC 4 cut(s) 57, 112, 417, 430
BssNI GRCGYC 1 cut(s) 593
Bst2UI CCWGG 2 cut(s) 474, 891
Bst4CI ACNGT 3 cut(s) 484, 711, 901
BstACI GRCGYC 1 cut(s) 593
BstC8I GCNNGC 1 cut(s) 790
BstDEI CTNAG 2 cut(s) 16, 748
BstENI CCTNNNNNAGG 1 cut(s) 822
BstF5I GGATG 2 cut(s) 416, 981
BstFNI CGCG 1 cut(s) 75
BstHHI GCGC 2 cut(s) 75, 273
BstKTI GATC 4 cut(s) 60, 115, 420, 433
BstMAI GTCTC 2 cut(s) 191, 717
BstMBI GATC 4 cut(s) 57, 112, 417, 430
BstMWI GCNNNNNNNGC 4 cut(s) 179, 374, 590, 782
BstNI CCWGG 2 cut(s) 474, 891
BstPAI GACNNNNGTC 1 cut(s) 933
BstSCI CCNGG 3 cut(s) 130, 472, 889
BstSFI CTRYAG 2 cut(s) 177, 369
BstUI CGCG 1 cut(s) 75
BstV1I GCAGC 8 cut(s) 82, 160, 163, 191, 355, 547, 794, 797
BstX2I RGATCY 2 cut(s) 57, 417
BstYI RGATCY 2 cut(s) 57, 417
BsuRI GGCC 2 cut(s) 489, 906
BtrI CACGTC 1 cut(s) 581
BtsCI GGATG 2 cut(s) 416, 981
BtsIMutI CAGTG 1 cut(s) 175
Cac8I GCNNGC 1 cut(s) 790
CciI TCATGA 1 cut(s) 427
CfoI GCGC 2 cut(s) 75, 273
Cfr10I RCCGGY 1 cut(s) 788
Cfr13I GGNCC 4 cut(s) 245, 488, 670, 905
CseI GACGC 3 cut(s) 33, 282, 582
CsiI ACCWGGT 1 cut(s) 889
Csp6I GTAC 3 cut(s) 647, 664, 871
CviAII CATG 3 cut(s) 428, 667, 717
CviQI GTAC 3 cut(s) 647, 664, 871
DdeI CTNAG 2 cut(s) 16, 748
DpnI GATC 4 cut(s) 59, 114, 419, 432
DpnII GATC 4 cut(s) 57, 112, 417, 430
DraIII CACNNNGTG 1 cut(s) 893
DrdI GACNNNNNNGTC 1 cut(s) 252
DseDI GACNNNNNNGTC 1 cut(s) 252
EciI GGCGGA 1 cut(s) 492
Eco47I GGWCC 2 cut(s) 245, 670
Eco57I CTGAAG 1 cut(s) 840
Eco88I CYCGRG 2 cut(s) 119, 733
EcoNI CCTNNNNNAGG 1 cut(s) 822
EcoRII CCWGG 2 cut(s) 472, 889
FaeI CATG 3 cut(s) 431, 670, 720
FatI CATG 3 cut(s) 427, 666, 716
FauI CCCGC 2 cut(s) 68, 160
FbaI TGATCA 1 cut(s) 430
FblI GTMKAC 1 cut(s) 596
Fnu4HI GCNGC 9 cut(s) 71, 174, 177, 180, 204, 369, 536, 783, 786
FokI GGATG 1 cut(s) 423
Fsp4HI GCNGC 9 cut(s) 71, 174, 177, 180, 204, 369, 536, 783, 786
FspBI CTAG 4 cut(s) 305, 500, 626, 917
GlaI GCGC 2 cut(s) 74, 272
GluI GCNGC 9 cut(s) 71, 174, 177, 180, 204, 369, 536, 783, 786
GsuI CTGGAG 1 cut(s) 357
HaeIII GGCC 2 cut(s) 489, 906
HapII CCGG 3 cut(s) 132, 545, 789
HgaI GACGC 3 cut(s) 33, 282, 582
HhaI GCGC 2 cut(s) 75, 273
Hin1I GRCGYC 1 cut(s) 593
Hin1II CATG 3 cut(s) 431, 670, 720
Hin6I GCGC 2 cut(s) 73, 271
HinP1I GCGC 2 cut(s) 73, 271
HinfI GANTC 2 cut(s) 768, 964
HpaII CCGG 3 cut(s) 132, 545, 789
HphI GGTGA 4 cut(s) 388, 425, 722, 854
Hpy166II GTNNAC 1 cut(s) 597
Hpy188I TCNGA 5 cut(s) 49, 103, 346, 417, 834
Hpy188III TCNNGA 6 cut(s) 61, 121, 243, 264, 428, 765
Hpy8I GTNNAC 1 cut(s) 597
Hpy99I CGWCG 1 cut(s) 49
HpyAV CCTTC 5 cut(s) 261, 623, 796, 802, 818
HpyCH4III ACNGT 3 cut(s) 484, 711, 901
HpyCH4IV ACGT 1 cut(s) 580
HpyCH4V TGCA 4 cut(s) 29, 179, 371, 896
HpyF10VI GCNNNNNNNGC 4 cut(s) 179, 374, 590, 782
HpyF3I CTNAG 2 cut(s) 16, 748
HpySE526I ACGT 1 cut(s) 580
Hsp92I GRCGYC 1 cut(s) 593
Hsp92II CATG 3 cut(s) 431, 670, 720
HspAI GCGC 2 cut(s) 73, 271
KroI GCCGGC 1 cut(s) 788
KroNI GCCGGC 1 cut(s) 790
Ksp22I TGATCA 1 cut(s) 430
Kzo9I GATC 4 cut(s) 57, 112, 417, 430
LmnI GCTCC 3 cut(s) 41, 106, 290
Lsp1109I GCAGC 8 cut(s) 82, 160, 163, 191, 355, 547, 794, 797
LweI GCATC 1 cut(s) 318
MabI ACCWGGT 1 cut(s) 889
MaeI CTAG 4 cut(s) 305, 500, 626, 917
MaeII ACGT 1 cut(s) 580
MaeIII GTNAC 4 cut(s) 394, 617, 652, 926
MalI GATC 4 cut(s) 59, 114, 419, 432
MboI GATC 4 cut(s) 57, 112, 417, 430
MboII GAAGA 2 cut(s) 372, 833
MflI RGATCY 2 cut(s) 57, 417
MhlI GDGCHC 2 cut(s) 242, 740
MluCI AATT 4 cut(s) 10, 32, 197, 679
MlyI GAGTC 1 cut(s) 958
MmeI TCCRAC 3 cut(s) 27, 812, 953
MnlI CCTC 9 cut(s) 32, 97, 128, 218, 398, 401, 569, 583, 724
MroNI GCCGGC 1 cut(s) 788
MseI TTAA 1 cut(s) 530
MslI CAYNNNNRTG 1 cut(s) 627
MspI CCGG 3 cut(s) 132, 545, 789
MspR9I CCNGG 3 cut(s) 132, 474, 891
MvaI CCWGG 2 cut(s) 474, 891
MvnI CGCG 1 cut(s) 75
MwoI GCNNNNNNNGC 4 cut(s) 179, 374, 590, 782
NaeI GCCGGC 1 cut(s) 790
NciI CCSGG 1 cut(s) 132
NdeII GATC 4 cut(s) 57, 112, 417, 430
NgoMIV GCCGGC 1 cut(s) 788
NlaIII CATG 3 cut(s) 431, 670, 720
NlaIV GGNNCC 3 cut(s) 108, 468, 672
NmuCI GTSAC 2 cut(s) 394, 926
PagI TCATGA 1 cut(s) 427
PcsI WCGNNNNNNNCGW 1 cut(s) 262
PdiI GCCGGC 1 cut(s) 790
PfeI GAWTC 1 cut(s) 768
PkrI GCNGC 9 cut(s) 72, 175, 178, 181, 205, 370, 537, 784, 787
PleI GAGTC 1 cut(s) 958
PpsI GAGTC 1 cut(s) 958
PshAI GACNNNNGTC 1 cut(s) 933
Psp6I CCWGG 2 cut(s) 472, 889
PspGI CCWGG 2 cut(s) 472, 889
PspN4I GGNNCC 3 cut(s) 108, 468, 672
PspPI GGNCC 4 cut(s) 245, 488, 670, 905
PstI CTGCAG 2 cut(s) 181, 373
PsuI RGATCY 2 cut(s) 57, 417
RsaI GTAC 3 cut(s) 648, 665, 872
RsaNI GTAC 3 cut(s) 647, 664, 871
RseI CAYNNNNRTG 1 cut(s) 627
SaqAI TTAA 1 cut(s) 530
SatI GCNGC 9 cut(s) 71, 174, 177, 180, 204, 369, 536, 783, 786
Sau3AI GATC 4 cut(s) 57, 112, 417, 430
Sau96I GGNCC 4 cut(s) 245, 488, 670, 905
SchI GAGTC 1 cut(s) 958
ScrFI CCNGG 3 cut(s) 132, 474, 891
SduI GDGCHC 2 cut(s) 242, 740
SetI ASST 9 cut(s) 93, 250, 256, 475, 583, 602, 627, 700, 892
SexAI ACCWGGT 1 cut(s) 889
SfaNI GCATC 1 cut(s) 318
SfcI CTRYAG 2 cut(s) 177, 369
SinI GGWCC 2 cut(s) 245, 670
SmiMI CAYNNNNRTG 1 cut(s) 627
Sse9I AATT 4 cut(s) 10, 32, 197, 679
SsiI CCGC 8 cut(s) 75, 153, 204, 232, 477, 564, 584, 792
SspI AATATT 1 cut(s) 635
SspMI CTAG 4 cut(s) 305, 500, 626, 917
StyD4I CCNGG 3 cut(s) 130, 472, 889
TaaI ACNGT 3 cut(s) 484, 711, 901
TaiI ACGT 1 cut(s) 583
TaqI TCGA 3 cut(s) 62, 265, 277
TasI AATT 4 cut(s) 10, 32, 197, 679
TatI WGTACW 1 cut(s) 663
TauI GCSGC 1 cut(s) 206
TfiI GAWTC 1 cut(s) 768
Tru1I TTAA 1 cut(s) 530
Tru9I TTAA 1 cut(s) 530
TscAI CASTG 1 cut(s) 175
TseFI GTSAC 2 cut(s) 394, 926
TseI GCWGC 8 cut(s) 70, 173, 176, 179, 368, 535, 782, 785
Tsp45I GTSAC 2 cut(s) 394, 926
TspDTI ATGAA 2 cut(s) 101, 645
TspGWI ACGGA 1 cut(s) 286
TspRI CASTG 1 cut(s) 175
VpaK11BI GGWCC 2 cut(s) 245, 670
XagI CCTNNNNNAGG 1 cut(s) 822
XmiI GTMKAC 1 cut(s) 596
XspI CTAG 4 cut(s) 305, 500, 626, 917
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.