pycom02g26130

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000520
Physical Location & Seq
Forward (+)
23981372 .. 23983321
1950 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g26130.1

Sequence Viewer

Length: 513 bp
ATGATCAACCGATCCAAGGCCGAGGCCAAGGCCAGGTTCAAGGCTAAGGCCAAGGCCAAGTCGAAGTCCCTAGCCGGACGAGGATCCGGATCCTGGCAGGGGAAGATTCCAGGCCAACCGACGAAGCTCGGAGGTGAGATCCGGACTCCTCCCTCTTCTCATGATGGCCCTCCGACTCAACTCAAAAATGAAAAGGCTGTTGAAAAGAATCTGGCTAAAGTCCAGCTTGACAAGGAGAATACTACTACTCCAAAACCAAAACCAGTAAAGAGAAAGAGCAGAATGGGTAGAACTTTCCTATTCACAGACCCTTGTCGAATTTGCAATGTGTTTGGGCACTGGACTGATTTATGCCCCTACCTGAAATTTGTCCCATACAACGTAACTAAGGTTGTTGGCAAGGGCTATGAAATACATGACGACCGCCATGGAAGGTATGCTGCTCTGATTTATTGTCTTGACTGTACGGTGCCGGTTGAACACGAGGCTGAAAAGTGCCCGTACAACAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

18.98

Weight (kDa)

9.74

Isoelectric Point (pI)

23.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 469
AccIII TCCGGA 2 cut(s) 86, 141
AciI CCGC 1 cut(s) 424
AclWI GGATC 6 cut(s) 6, 78, 84, 91, 97, 133
AcsI RAATTY 2 cut(s) 318, 365
AfaI GTAC 2 cut(s) 466, 503
AfiI CCNNNNNNNGG 4 cut(s) 16, 33, 93, 99
AgsI TTSAA 3 cut(s) 40, 203, 479
AjnI CCWGG 3 cut(s) 32, 92, 109
AjuI GAANNNNNNNTTGG 2 cut(s) 20, 52
AluBI AGCT 3 cut(s) 127, 226, 510
AluI AGCT 3 cut(s) 127, 226, 510
AlwI GGATC 6 cut(s) 6, 78, 84, 91, 97, 133
Aor13HI TCCGGA 2 cut(s) 86, 141
AoxI GGCC 7 cut(s) 18, 24, 30, 48, 54, 112, 166
ApeKI GCWGC 1 cut(s) 440
ApoI RAATTY 2 cut(s) 318, 365
AspS9I GGNCC 1 cut(s) 167
AsuHPI GGTGA 1 cut(s) 146
BaeGI GKGCMC 2 cut(s) 339, 500
BamHI GGATCC 2 cut(s) 83, 89
BanI GGYRCC 1 cut(s) 469
BauI CACGAG 1 cut(s) 482
BbvI GCAGC 1 cut(s) 427
BccI CCATC 1 cut(s) 158
BciT130I CCWGG 3 cut(s) 34, 94, 111
BclI TGATCA 1 cut(s) 3
BfaI CTAG 1 cut(s) 71
BisI GCNGC 1 cut(s) 441
BlsI GCNGC 1 cut(s) 442
Bme1390I CCNGG 3 cut(s) 34, 94, 111
BmgT120I GGNCC 1 cut(s) 167
BmiI GGNNCC 3 cut(s) 85, 91, 471
BmrFI CCNGG 3 cut(s) 34, 94, 111
BoxI GACNNNNGTC 1 cut(s) 312
Bpu10I CCTNAGC 1 cut(s) 45
BsaBI GATNNNNATC 1 cut(s) 88
BsaJI CCNNGG 5 cut(s) 15, 21, 27, 51, 427
BsaWI WCCGGW 2 cut(s) 86, 141
BsaXI ACNNNNNCTCC 2 cut(s) 232, 262
Bsc4I CCNNNNNNNGG 4 cut(s) 16, 33, 93, 99
Bse118I RCCGGY 1 cut(s) 472
Bse1I ACTGG 2 cut(s) 263, 344
Bse3DI GCAATG 1 cut(s) 331
Bse8I GATNNNNATC 1 cut(s) 88
BseAI TCCGGA 2 cut(s) 86, 141
BseBI CCWGG 3 cut(s) 34, 94, 111
BseDI CCNNGG 5 cut(s) 15, 21, 27, 51, 427
BseJI GATNNNNATC 1 cut(s) 88
BseLI CCNNNNNNNGG 4 cut(s) 16, 33, 93, 99
BseMI GCAATG 1 cut(s) 331
BseNI ACTGG 2 cut(s) 263, 344
BseRI GAGGAG 1 cut(s) 138
BseSI GKGCMC 2 cut(s) 339, 500
BseXI GCAGC 1 cut(s) 427
Bsh1285I CGRYCG 1 cut(s) 424
BshFI GGCC 7 cut(s) 20, 26, 32, 50, 56, 114, 168
BshNI GGYRCC 1 cut(s) 469
BsiEI CGRYCG 1 cut(s) 424
BsiSI CCGG 4 cut(s) 75, 87, 142, 473
BslFI GGGAC 2 cut(s) 52, 356
BslI CCNNNNNNNGG 4 cut(s) 16, 33, 93, 99
BsmFI GGGAC 2 cut(s) 52, 356
BsnI GGCC 7 cut(s) 20, 26, 32, 50, 56, 114, 168
Bsp1286I GDGCHC 2 cut(s) 339, 500
Bsp13I TCCGGA 2 cut(s) 86, 141
Bsp143I GATC 5 cut(s) 3, 11, 83, 89, 138
Bsp19I CCATGG 1 cut(s) 427
BspACI CCGC 1 cut(s) 424
BspANI GGCC 7 cut(s) 20, 26, 32, 50, 56, 114, 168
BspEI TCCGGA 2 cut(s) 86, 141
BspHI TCATGA 1 cut(s) 160
BspLI GGNNCC 3 cut(s) 85, 91, 471
BspPI GGATC 6 cut(s) 6, 78, 84, 91, 97, 133
BspT107I GGYRCC 1 cut(s) 469
BsrDI GCAATG 1 cut(s) 331
BsrFI RCCGGY 1 cut(s) 472
BsrI ACTGG 2 cut(s) 263, 344
BssAI RCCGGY 1 cut(s) 472
BssECI CCNNGG 5 cut(s) 15, 21, 27, 51, 427
BssMI GATC 5 cut(s) 3, 11, 83, 89, 138
BssSI CACGAG 1 cut(s) 482
BssT1I CCWWGG 4 cut(s) 15, 27, 51, 427
Bst2BI CACGAG 1 cut(s) 482
Bst2UI CCWGG 3 cut(s) 34, 94, 111
Bst4CI ACNGT 2 cut(s) 464, 469
Bst6I CTCTTC 1 cut(s) 160
BstDEI CTNAG 2 cut(s) 45, 387
BstDSI CCRYGG 1 cut(s) 427
BstKTI GATC 5 cut(s) 6, 14, 86, 92, 141
BstMBI GATC 5 cut(s) 3, 11, 83, 89, 138
BstMCI CGRYCG 1 cut(s) 424
BstNI CCWGG 3 cut(s) 34, 94, 111
BstPAI GACNNNNGTC 1 cut(s) 312
BstSCI CCNGG 3 cut(s) 32, 92, 109
BstSLI GKGCMC 2 cut(s) 339, 500
BstV1I GCAGC 1 cut(s) 427
BstX2I RGATCY 3 cut(s) 83, 89, 138
BstYI RGATCY 3 cut(s) 83, 89, 138
BsuRI GGCC 7 cut(s) 20, 26, 32, 50, 56, 114, 168
BtgI CCRYGG 1 cut(s) 427
BtsIMutI CAGTG 1 cut(s) 337
CciI TCATGA 1 cut(s) 160
Cfr10I RCCGGY 1 cut(s) 472
Cfr13I GGNCC 1 cut(s) 167
Csp6I GTAC 2 cut(s) 465, 502
CviAII CATG 3 cut(s) 161, 416, 428
CviQI GTAC 2 cut(s) 465, 502
DdeI CTNAG 2 cut(s) 45, 387
DpnI GATC 5 cut(s) 5, 13, 85, 91, 140
DpnII GATC 5 cut(s) 3, 11, 83, 89, 138
Eam1104I CTCTTC 1 cut(s) 160
EarI CTCTTC 1 cut(s) 160
Eco130I CCWWGG 4 cut(s) 15, 27, 51, 427
EcoRII CCWGG 3 cut(s) 32, 92, 109
EcoT14I CCWWGG 4 cut(s) 15, 27, 51, 427
ErhI CCWWGG 4 cut(s) 15, 27, 51, 427
FaeI CATG 3 cut(s) 164, 419, 431
FaiI YATR 7 cut(s) 162, 352, 376, 408, 417, 429, 438
FalI AAGNNNNNCTT 2 cut(s) 210, 242
FaqI GGGAC 2 cut(s) 52, 356
FatI CATG 3 cut(s) 160, 415, 427
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 1 cut(s) 441
Fsp4HI GCNGC 1 cut(s) 441
FspBI CTAG 1 cut(s) 71
GluI GCNGC 1 cut(s) 441
HaeIII GGCC 7 cut(s) 20, 26, 32, 50, 56, 114, 168
HapII CCGG 4 cut(s) 75, 87, 142, 473
Hin1II CATG 3 cut(s) 164, 419, 431
HinfI GANTC 4 cut(s) 106, 145, 175, 208
HpaII CCGG 4 cut(s) 75, 87, 142, 473
HphI GGTGA 1 cut(s) 146
Hpy188I TCNGA 3 cut(s) 131, 174, 447
Hpy188III TCNNGA 4 cut(s) 87, 142, 161, 458
Hpy99I CGWCG 1 cut(s) 124
HpyAV CCTTC 1 cut(s) 426
HpyCH4III ACNGT 2 cut(s) 464, 469
HpyCH4IV ACGT 1 cut(s) 381
HpyCH4V TGCA 1 cut(s) 324
HpyF3I CTNAG 2 cut(s) 45, 387
HpySE526I ACGT 1 cut(s) 381
Hsp92II CATG 3 cut(s) 164, 419, 431
Kpn2I TCCGGA 2 cut(s) 86, 141
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 5 cut(s) 3, 11, 83, 89, 138
Lsp1109I GCAGC 1 cut(s) 427
MaeI CTAG 1 cut(s) 71
MaeII ACGT 1 cut(s) 381
MaeIII GTNAC 1 cut(s) 382
MalI GATC 5 cut(s) 5, 13, 85, 91, 140
MboI GATC 5 cut(s) 3, 11, 83, 89, 138
MboII GAAGA 2 cut(s) 115, 147
MflI RGATCY 3 cut(s) 83, 89, 138
MhlI GDGCHC 2 cut(s) 339, 500
MluCI AATT 2 cut(s) 318, 365
MlyI GAGTC 2 cut(s) 139, 169
MmeI TCCRAC 1 cut(s) 197
MnlI CCTC 7 cut(s) 16, 74, 125, 159, 163, 180, 478
MroI TCCGGA 2 cut(s) 86, 141
MspA1I CMGCKG 1 cut(s) 510
MspI CCGG 4 cut(s) 75, 87, 142, 473
MspR9I CCNGG 3 cut(s) 34, 94, 111
MvaI CCWGG 3 cut(s) 34, 94, 111
NcoI CCATGG 1 cut(s) 427
NdeII GATC 5 cut(s) 3, 11, 83, 89, 138
NlaIII CATG 3 cut(s) 164, 419, 431
NlaIV GGNNCC 3 cut(s) 85, 91, 471
NmeAIII GCCGAG 1 cut(s) 46
PagI TCATGA 1 cut(s) 160
PfeI GAWTC 2 cut(s) 106, 208
PkrI GCNGC 1 cut(s) 442
PleI GAGTC 2 cut(s) 139, 169
PpsI GAGTC 2 cut(s) 139, 169
PshAI GACNNNNGTC 1 cut(s) 312
Psp6I CCWGG 3 cut(s) 32, 92, 109
PspGI CCWGG 3 cut(s) 32, 92, 109
PspN4I GGNNCC 3 cut(s) 85, 91, 471
PspPI GGNCC 1 cut(s) 167
PsuI RGATCY 3 cut(s) 83, 89, 138
PvuII CAGCTG 1 cut(s) 510
RsaI GTAC 2 cut(s) 466, 503
RsaNI GTAC 2 cut(s) 465, 502
SatI GCNGC 1 cut(s) 441
Sau3AI GATC 5 cut(s) 3, 11, 83, 89, 138
Sau96I GGNCC 1 cut(s) 167
SchI GAGTC 2 cut(s) 139, 169
ScrFI CCNGG 3 cut(s) 34, 94, 111
SduI GDGCHC 2 cut(s) 339, 500
SetI ASST 9 cut(s) 38, 129, 136, 228, 363, 384, 393, 437, 512
Sse9I AATT 2 cut(s) 318, 365
SsiI CCGC 1 cut(s) 424
SspMI CTAG 1 cut(s) 71
StyD4I CCNGG 3 cut(s) 32, 92, 109
StyI CCWWGG 4 cut(s) 15, 27, 51, 427
TaaI ACNGT 2 cut(s) 464, 469
TaiI ACGT 1 cut(s) 384
TaqI TCGA 2 cut(s) 62, 316
TasI AATT 2 cut(s) 318, 365
TfiI GAWTC 2 cut(s) 106, 208
TscAI CASTG 1 cut(s) 344
TseI GCWGC 1 cut(s) 440
TspDTI ATGAA 2 cut(s) 204, 423
TspRI CASTG 1 cut(s) 344
XapI RAATTY 2 cut(s) 318, 365
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.