Rorug02G0354400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000520
Physical Location & Seq
Forward (+)
44571114 .. 44572598
1485 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0354400.1

Sequence Viewer

Length: 351 bp
ATGGAGGAGGAGGCGTCTTATATAGCCTACTTTGGGATTGGAGATTTACCCGCTTTCGATATGGGAGAATGTGCGCAAAGTAATTCTACTGAGTTTGATCGCCTGAGGATGAGTGTGGATTTCACTATGCAGAATTGTTTCTACGAGGGAGATGTTCATCGAGACGGGGATTACCATCGAGCTGTTCATGTCTGGATTTTCGCCGAAAGCACGCAAGAACTGCTTATCCAGAAACGTGCTGACTTCAAGGATTCTTGGGCCGGCTTGTGGGACATCTCCAGTGCTGGACATATATCCGCCGACGATTCGTCTCTTATCACTGCCCGGAGGGAGCTTGAAGAGGAGCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.34

Weight (kDa)

4.41

Isoelectric Point (pI)

57.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUDIX PF00293 58 - 115 8.4e-10 NUDIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 75
AciI CCGC 2 cut(s) 51, 297
AcyI GRCGYC 1 cut(s) 14
AfeI AGCGCT 1 cut(s) 347
AfiI CCNNNNNNNGG 2 cut(s) 33, 267
AgsI TTSAA 2 cut(s) 247, 338
AhdI GACNNNNNGTC 1 cut(s) 307
AloI GAACNNNNNNTCC 2 cut(s) 210, 242
AluBI AGCT 2 cut(s) 182, 334
AluI AGCT 2 cut(s) 182, 334
Alw26I GTCTC 2 cut(s) 156, 315
Aor51HI AGCGCT 1 cut(s) 347
AoxI GGCC 1 cut(s) 258
Asp700I GAANNNNTTC 1 cut(s) 137
AspLEI GCGC 2 cut(s) 76, 348
AspS9I GGNCC 1 cut(s) 258
AsuC2I CCSGG 1 cut(s) 325
AxyI CCTNAGG 1 cut(s) 104
BccI CCATC 1 cut(s) 183
BcnI CCSGG 1 cut(s) 325
BcoDI GTCTC 2 cut(s) 156, 315
BfaI CTAG 1 cut(s) 349
BfoI RGCGCY 1 cut(s) 349
Bme1390I CCNGG 1 cut(s) 325
BmeRI GACNNNNNGTC 1 cut(s) 307
BmgT120I GGNCC 1 cut(s) 258
BmrFI CCNGG 1 cut(s) 325
BpmI CTGGAG 1 cut(s) 262
BpuMI CCSGG 1 cut(s) 325
BsaBI GATNNNNATC 2 cut(s) 156, 174
BsaHI GRCGYC 1 cut(s) 14
BsaXI ACNNNNNCTCC 1 cut(s) 29
Bsc4I CCNNNNNNNGG 2 cut(s) 33, 267
Bse118I RCCGGY 1 cut(s) 260
Bse1I ACTGG 1 cut(s) 279
Bse21I CCTNAGG 1 cut(s) 104
Bse8I GATNNNNATC 2 cut(s) 156, 174
BseGI GGATG 1 cut(s) 114
BseJI GATNNNNATC 2 cut(s) 156, 174
BseLI CCNNNNNNNGG 2 cut(s) 33, 267
BseMII CTCAG 2 cut(s) 81, 95
BseNI ACTGG 1 cut(s) 279
BseRI GAGGAG 2 cut(s) 20, 23
BshFI GGCC 1 cut(s) 260
BsiSI CCGG 2 cut(s) 261, 325
BslFI GGGAC 1 cut(s) 284
BslI CCNNNNNNNGG 2 cut(s) 33, 267
BsmAI GTCTC 2 cut(s) 156, 315
BsmBI CGTCTC 2 cut(s) 156, 315
BsmFI GGGAC 1 cut(s) 284
BsnI GGCC 1 cut(s) 260
Bsp143I GATC 1 cut(s) 97
BspACI CCGC 2 cut(s) 51, 297
BspANI GGCC 1 cut(s) 260
BspCNI CTCAG 2 cut(s) 82, 96
BsrFI RCCGGY 1 cut(s) 260
BsrI ACTGG 1 cut(s) 279
BssAI RCCGGY 1 cut(s) 260
BssMI GATC 1 cut(s) 97
BssNI GRCGYC 1 cut(s) 14
Bst6I CTCTTC 1 cut(s) 333
BstACI GRCGYC 1 cut(s) 14
BstAPI GCANNNNNTGC 1 cut(s) 220
BstC8I GCNNGC 2 cut(s) 212, 262
BstDEI CTNAG 2 cut(s) 90, 104
BstF5I GGATG 1 cut(s) 114
BstH2I RGCGCY 1 cut(s) 349
BstHHI GCGC 2 cut(s) 76, 348
BstKTI GATC 1 cut(s) 100
BstMAI GTCTC 2 cut(s) 156, 315
BstMBI GATC 1 cut(s) 97
BstMWI GCNNNNNNNGC 1 cut(s) 220
BstSCI CCNGG 1 cut(s) 323
Bsu36I CCTNAGG 1 cut(s) 104
BsuRI GGCC 1 cut(s) 260
BtsCI GGATG 1 cut(s) 114
BtsI GCAGTG 1 cut(s) 318
BtsIMutI CAGTG 2 cut(s) 286, 318
Cac8I GCNNGC 2 cut(s) 212, 262
CfoI GCGC 2 cut(s) 76, 348
Cfr10I RCCGGY 1 cut(s) 260
Cfr13I GGNCC 1 cut(s) 258
CseI GACGC 1 cut(s) 3
CviAII CATG 1 cut(s) 188
CviJI RGCY 5 cut(s) 26, 182, 260, 264, 334
CviKI_1 RGCY 5 cut(s) 26, 182, 260, 264, 334
DdeI CTNAG 2 cut(s) 90, 104
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
DriI GACNNNNNGTC 1 cut(s) 307
Eam1104I CTCTTC 1 cut(s) 333
Eam1105I GACNNNNNGTC 1 cut(s) 307
EarI CTCTTC 1 cut(s) 333
EciI GGCGGA 1 cut(s) 286
Eco47III AGCGCT 1 cut(s) 347
Eco81I CCTNAGG 1 cut(s) 104
Esp3I CGTCTC 2 cut(s) 156, 315
FaeI CATG 1 cut(s) 191
FaiI YATR 7 cut(s) 21, 23, 62, 128, 189, 291, 293
FalI AAGNNNNNCTT 2 cut(s) 207, 239
FaqI GGGAC 1 cut(s) 284
FatI CATG 1 cut(s) 187
FauI CCCGC 1 cut(s) 58
FokI GGATG 1 cut(s) 121
FspBI CTAG 1 cut(s) 349
FspI TGCGCA 1 cut(s) 75
GlaI GCGC 2 cut(s) 75, 347
GsuI CTGGAG 1 cut(s) 262
HaeII RGCGCY 1 cut(s) 349
HaeIII GGCC 1 cut(s) 260
HapII CCGG 2 cut(s) 261, 325
HgaI GACGC 1 cut(s) 3
HhaI GCGC 2 cut(s) 76, 348
Hin1I GRCGYC 1 cut(s) 14
Hin1II CATG 1 cut(s) 191
Hin6I GCGC 2 cut(s) 74, 346
HinP1I GCGC 2 cut(s) 74, 346
HinfI GANTC 2 cut(s) 251, 305
HpaII CCGG 2 cut(s) 261, 325
Hpy188III TCNNGA 3 cut(s) 161, 193, 229
Hpy99I CGWCG 1 cut(s) 305
HpyCH4IV ACGT 1 cut(s) 235
HpyCH4V TGCA 1 cut(s) 130
HpyF10VI GCNNNNNNNGC 1 cut(s) 220
HpyF3I CTNAG 2 cut(s) 90, 104
HpySE526I ACGT 1 cut(s) 235
Hsp92I GRCGYC 1 cut(s) 14
Hsp92II CATG 1 cut(s) 191
HspAI GCGC 2 cut(s) 74, 346
KroI GCCGGC 1 cut(s) 260
KroNI GCCGGC 1 cut(s) 262
Kzo9I GATC 1 cut(s) 97
LmnI GCTCC 2 cut(s) 331, 343
LpnPI CCDG 7 cut(s) 116, 178, 242, 270, 274, 292, 338
MaeI CTAG 1 cut(s) 349
MaeII ACGT 1 cut(s) 235
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MboII GAAGA 1 cut(s) 350
MluCI AATT 2 cut(s) 82, 133
MnlI CCTC 5 cut(s) 4, 99, 139, 321, 334
MroNI GCCGGC 1 cut(s) 260
MroXI GAANNNNTTC 1 cut(s) 137
MspI CCGG 2 cut(s) 261, 325
MspR9I CCNGG 1 cut(s) 325
MwoI GCNNNNNNNGC 1 cut(s) 220
NaeI GCCGGC 1 cut(s) 262
NciI CCSGG 1 cut(s) 325
NdeII GATC 1 cut(s) 97
NgoMIV GCCGGC 1 cut(s) 260
NlaIII CATG 1 cut(s) 191
NsbI TGCGCA 1 cut(s) 75
PdiI GCCGGC 1 cut(s) 262
PdmI GAANNNNTTC 1 cut(s) 137
PfeI GAWTC 2 cut(s) 251, 305
PspPI GGNCC 1 cut(s) 258
Sau3AI GATC 1 cut(s) 97
Sau96I GGNCC 1 cut(s) 258
ScrFI CCNGG 1 cut(s) 325
SetI ASST 3 cut(s) 184, 238, 336
Sse9I AATT 2 cut(s) 82, 133
SsiI CCGC 2 cut(s) 51, 297
SspMI CTAG 1 cut(s) 349
StyD4I CCNGG 1 cut(s) 323
TaiI ACGT 1 cut(s) 238
TaqI TCGA 3 cut(s) 57, 160, 178
TasI AATT 2 cut(s) 82, 133
TfiI GAWTC 2 cut(s) 251, 305
TscAI CASTG 2 cut(s) 286, 325
TspDTI ATGAA 2 cut(s) 146, 176
TspRI CASTG 2 cut(s) 286, 325
XmnI GAANNNNTTC 1 cut(s) 137
XspI CTAG 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.