Rh7AG315900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000520
Physical Location & Seq
Reverse (-)
35491400 .. 35494503
3104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG315900.1

Sequence Viewer

Length: 519 bp
ATGTCTCTGATGATAGAGAAACCAGCCGGCAAGGAGGTGGGCTGCGACCCGGCGCAACTGGCGAAACGTGGATGGCTCAAGGGCGACGACCTCAGAGAGCCGACCTGCATACGTATGTTGCCAATGAAAAACAAGGACGACGACGACGAGATCTGGGTTCCGGCACAGTACTGTAACAAGCCTGAAGAACCTCCTAGTGATGAAGAGCTAAAACGCCTGTCTCACCTTTTGGCAGAAGAACCAGACAAGCTCACAAAGGACGAATCAAACATCCTATGTCGCTTTCTCCCTACCCCCAAGTTTGATGAACTCTTCTTTAAACGGGCAAGGGAGAAGAAAGGTTTTGGAATGAATAATGGAACCACTGTCAATTCAAAACATTCAAGTACAATCCACCGCTACAATATAAAAGTCAGAGATGCAGCTGAAGGCAGCATATATAGAATTCTAGTAACCTTGCTTGTCAAGTCAACTATCAGCACGAGTAGAGAATTAAGTGAACTAACCATAAAACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

19.65

Weight (kDa)

7.64

Isoelectric Point (pI)

47.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 113
AciI CCGC 1 cut(s) 397
AcsI RAATTY 1 cut(s) 444
AcuI CTGAAG 2 cut(s) 204, 447
AfaI GTAC 2 cut(s) 170, 388
AgsI TTSAA 2 cut(s) 375, 384
AluBI AGCT 3 cut(s) 208, 250, 425
AluI AGCT 3 cut(s) 208, 250, 425
Alw26I GTCTC 2 cut(s) 9, 225
ApeKI GCWGC 3 cut(s) 42, 422, 432
ApoI RAATTY 1 cut(s) 444
AspLEI GCGC 1 cut(s) 55
AsuC2I CCSGG 1 cut(s) 50
AsuHPI GGTGA 1 cut(s) 215
BauI CACGAG 1 cut(s) 481
BbvI GCAGC 3 cut(s) 29, 434, 444
BccI CCATC 1 cut(s) 66
BcnI CCSGG 1 cut(s) 50
BcoDI GTCTC 2 cut(s) 9, 225
BfaI CTAG 2 cut(s) 195, 449
BfuAI ACCTGC 1 cut(s) 113
BglII AGATCT 1 cut(s) 150
BisI GCNGC 3 cut(s) 43, 423, 433
BlsI GCNGC 3 cut(s) 44, 424, 434
BmcAI AGTACT 1 cut(s) 170
Bme1390I CCNGG 1 cut(s) 50
BmiI GGNNCC 2 cut(s) 159, 361
BmrFI CCNGG 1 cut(s) 50
BmsI GCATC 1 cut(s) 409
BpuEI CTTGAG 1 cut(s) 62
BpuMI CCSGG 1 cut(s) 50
BsaAI YACGTR 1 cut(s) 113
Bse118I RCCGGY 1 cut(s) 26
Bse1I ACTGG 1 cut(s) 63
BseGI GGATG 2 cut(s) 77, 270
BseMII CTCAG 1 cut(s) 106
BseNI ACTGG 1 cut(s) 63
BseXI GCAGC 3 cut(s) 29, 434, 444
BsiSI CCGG 3 cut(s) 27, 50, 161
BsmAI GTCTC 2 cut(s) 9, 225
Bsp143I GATC 1 cut(s) 150
BspACI CCGC 1 cut(s) 397
BspCNI CTCAG 1 cut(s) 105
BspLI GGNNCC 2 cut(s) 159, 361
BspMI ACCTGC 1 cut(s) 113
BspQI GCTCTTC 1 cut(s) 198
BsrFI RCCGGY 1 cut(s) 26
BsrI ACTGG 1 cut(s) 63
BssAI RCCGGY 1 cut(s) 26
BssMI GATC 1 cut(s) 150
BssSI CACGAG 1 cut(s) 481
Bst2BI CACGAG 1 cut(s) 481
Bst4CI ACNGT 3 cut(s) 168, 173, 367
Bst6I CTCTTC 2 cut(s) 198, 317
BstBAI YACGTR 1 cut(s) 113
BstC8I GCNNGC 1 cut(s) 28
BstDEI CTNAG 1 cut(s) 92
BstF5I GGATG 2 cut(s) 77, 270
BstHHI GCGC 1 cut(s) 55
BstKTI GATC 1 cut(s) 153
BstMAI GTCTC 2 cut(s) 9, 225
BstMBI GATC 1 cut(s) 150
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstSCI CCNGG 1 cut(s) 48
BstSNI TACGTA 1 cut(s) 113
BstV1I GCAGC 3 cut(s) 29, 434, 444
BstX2I RGATCY 1 cut(s) 150
BstYI RGATCY 1 cut(s) 150
BtsCI GGATG 2 cut(s) 77, 270
BtsIMutI CAGTG 1 cut(s) 363
BveI ACCTGC 1 cut(s) 113
Cac8I GCNNGC 1 cut(s) 28
CfoI GCGC 1 cut(s) 55
Cfr10I RCCGGY 1 cut(s) 26
Csp6I GTAC 2 cut(s) 169, 387
CviJI RGCY 8 cut(s) 26, 42, 76, 100, 181, 208, 250, 425
CviKI_1 RGCY 8 cut(s) 26, 42, 76, 100, 181, 208, 250, 425
CviQI GTAC 2 cut(s) 169, 387
DdeI CTNAG 1 cut(s) 92
DpnI GATC 1 cut(s) 152
DpnII GATC 1 cut(s) 150
DraI TTTAAA 1 cut(s) 319
Eam1104I CTCTTC 2 cut(s) 198, 317
EarI CTCTTC 2 cut(s) 198, 317
Eco105I TACGTA 1 cut(s) 113
Eco57I CTGAAG 2 cut(s) 204, 447
EcoRI GAATTC 1 cut(s) 444
FaiI YATR 9 cut(s) 110, 116, 277, 407, 437, 439, 441, 509, 517
Fnu4HI GCNGC 3 cut(s) 43, 423, 433
FokI GGATG 2 cut(s) 84, 257
Fsp4HI GCNGC 3 cut(s) 43, 423, 433
FspBI CTAG 2 cut(s) 195, 449
GlaI GCGC 1 cut(s) 54
GluI GCNGC 3 cut(s) 43, 423, 433
HapII CCGG 3 cut(s) 27, 50, 161
HhaI GCGC 1 cut(s) 55
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HincII GTYRAC 1 cut(s) 471
HindII GTYRAC 1 cut(s) 471
HinfI GANTC 1 cut(s) 263
HpaII CCGG 3 cut(s) 27, 50, 161
HphI GGTGA 1 cut(s) 215
Hpy166II GTNNAC 2 cut(s) 471, 500
Hpy188I TCNGA 3 cut(s) 9, 95, 416
Hpy8I GTNNAC 2 cut(s) 471, 500
Hpy99I CGWCG 4 cut(s) 89, 143, 146, 149
HpyAV CCTTC 1 cut(s) 422
HpyCH4III ACNGT 3 cut(s) 168, 173, 367
HpyCH4IV ACGT 2 cut(s) 67, 112
HpyCH4V TGCA 2 cut(s) 108, 422
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpyF3I CTNAG 1 cut(s) 92
HpySE526I ACGT 2 cut(s) 67, 112
HspAI GCGC 1 cut(s) 53
KroI GCCGGC 1 cut(s) 26
KroNI GCCGGC 1 cut(s) 28
Kzo9I GATC 1 cut(s) 150
LguI GCTCTTC 1 cut(s) 198
Lsp1109I GCAGC 3 cut(s) 29, 434, 444
LweI GCATC 1 cut(s) 409
MaeI CTAG 2 cut(s) 195, 449
MaeII ACGT 2 cut(s) 67, 112
MaeIII GTNAC 2 cut(s) 173, 451
MalI GATC 1 cut(s) 152
MboI GATC 1 cut(s) 150
MboII GAAGA 5 cut(s) 197, 215, 248, 304, 346
MflI RGATCY 1 cut(s) 150
MluCI AATT 3 cut(s) 370, 444, 491
MnlI CCTC 3 cut(s) 28, 101, 201
MroNI GCCGGC 1 cut(s) 26
MseI TTAA 2 cut(s) 318, 494
MslI CAYNNNNRTG 1 cut(s) 113
MspA1I CMGCKG 1 cut(s) 425
MspI CCGG 3 cut(s) 27, 50, 161
MspR9I CCNGG 1 cut(s) 50
MwoI GCNNNNNNNGC 1 cut(s) 59
NaeI GCCGGC 1 cut(s) 28
NciI CCSGG 1 cut(s) 50
NdeII GATC 1 cut(s) 150
NgoMIV GCCGGC 1 cut(s) 26
NlaIV GGNNCC 2 cut(s) 159, 361
PciSI GCTCTTC 1 cut(s) 198
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PdiI GCCGGC 1 cut(s) 28
PfeI GAWTC 1 cut(s) 263
PkrI GCNGC 3 cut(s) 44, 424, 434
Ppu21I YACGTR 1 cut(s) 113
PspN4I GGNNCC 2 cut(s) 159, 361
PsuI RGATCY 1 cut(s) 150
PvuII CAGCTG 1 cut(s) 425
RsaI GTAC 2 cut(s) 170, 388
RsaNI GTAC 2 cut(s) 169, 387
RseI CAYNNNNRTG 1 cut(s) 113
SapI GCTCTTC 1 cut(s) 198
SaqAI TTAA 2 cut(s) 318, 494
SatI GCNGC 3 cut(s) 43, 423, 433
Sau3AI GATC 1 cut(s) 150
ScaI AGTACT 1 cut(s) 170
ScrFI CCNGG 1 cut(s) 50
SfaNI GCATC 1 cut(s) 409
SmiMI CAYNNNNRTG 1 cut(s) 113
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
SnaBI TACGTA 1 cut(s) 113
Sse9I AATT 3 cut(s) 370, 444, 491
SsiI CCGC 1 cut(s) 397
SspMI CTAG 2 cut(s) 195, 449
StyD4I CCNGG 1 cut(s) 48
TaaI ACNGT 3 cut(s) 168, 173, 367
TaiI ACGT 2 cut(s) 70, 115
TasI AATT 3 cut(s) 370, 444, 491
TatI WGTACW 2 cut(s) 168, 386
TfiI GAWTC 1 cut(s) 263
Tru1I TTAA 2 cut(s) 318, 494
Tru9I TTAA 2 cut(s) 318, 494
TscAI CASTG 1 cut(s) 370
TseI GCWGC 3 cut(s) 42, 422, 432
TspDTI ATGAA 4 cut(s) 140, 216, 321, 365
TspRI CASTG 1 cut(s) 370
XapI RAATTY 1 cut(s) 444
XspI CTAG 2 cut(s) 195, 449
ZrmI AGTACT 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.