pycom08g20290

Tumour-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0000520
Physical Location & Seq
Reverse (-)
20140393 .. 20141815
1423 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g20290.3

Sequence Viewer

Length: 663 bp
ATGTTCGGTTTAGTATATAAGTCTGTCGAAGGTTTAGGATACTCGGCAATCCAATTAGAACCAAAAAAACAAACTCGTGCAACTGCAGTCTCTCTCTCTCTGACAAAAACCATGCATCGCCGACCCAAAGCCACATCCAAGGCGAAGGCTAGGTCCAAGTCCCTCGCCGAACAAGGATCCGGGAGGGGGAAGAATCCAATTCCATCCCAACCGACGAAGCTCCGAGATAAGAAGAAAGAAAACAAGGCGGCTGTTAAAGACTCTCCGACGACTCACCTCAAGAATATAAAGGCTGTTGCGGACTCTCTGGCTCAAATCCAACTTGAGGAGAAGAATCCTAGCCCAGCTTTTTACCAGGAGGACAAAATTCCCAAATGCATAGTCGAGCCACGTGTAGTTTCCGAATTGCCGTCAAGTTGTCCAATTTGCACTAAGTTTGGCCACGCTCCTGAACAATGTCCCTGGAGGAGACGTCTCCCTTTCGGCGTAACTCAAGTTGGCAAGGGCTATGAAATATACGGGCGGCGTGTTAATATCCTTTGGTGTTCTTTTTGTGATGAGATTGGTCACGACACGATCTCAGAATGCCCCGAGGGGAACAAAAAGATGGGGAGAACTGGATCATGGGAAGAGTTCTTCTTCCCTGAAGATAAGGACAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Membralin

Protein Analysis

221

Amino Acids

24.6

Weight (kDa)

9.46

Isoelectric Point (pI)

68.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 475
AciI CCGC 3 cut(s) 248, 299, 523
AclWI GGATC 3 cut(s) 171, 184, 628
AcoI YGGCCR 1 cut(s) 439
AcsI RAATTY 1 cut(s) 366
AcvI CACGTG 1 cut(s) 392
AcyI GRCGYC 1 cut(s) 472
AfiI CCNNNNNNNGG 2 cut(s) 186, 325
AflIII ACRYGT 1 cut(s) 391
AjnI CCWGG 2 cut(s) 354, 461
AluBI AGCT 2 cut(s) 220, 347
AluI AGCT 2 cut(s) 220, 347
Alw26I GTCTC 3 cut(s) 94, 463, 479
AlwI GGATC 3 cut(s) 171, 184, 628
Ama87I CYCGRG 1 cut(s) 590
AoxI GGCC 1 cut(s) 439
ApoI RAATTY 1 cut(s) 366
ArsI GACNNNNNNTTYG 4 cut(s) 137, 169, 366, 398
AspS9I GGNCC 1 cut(s) 153
AsuC2I CCSGG 1 cut(s) 181
AsuHPI GGTGA 1 cut(s) 266
AvaI CYCGRG 1 cut(s) 590
AvaII GGWCC 1 cut(s) 153
BalI TGGCCA 1 cut(s) 441
BamHI GGATCC 1 cut(s) 176
BauI CACGAG 1 cut(s) 75
BbrPI CACGTG 1 cut(s) 392
BccI CCATC 2 cut(s) 211, 601
BceAI ACGGC 1 cut(s) 394
BciT130I CCWGG 2 cut(s) 356, 463
BciVI GTATCC 1 cut(s) 32
BcnI CCSGG 1 cut(s) 181
BcoDI GTCTC 3 cut(s) 94, 463, 479
BfaI CTAG 2 cut(s) 150, 339
BfmI CTRYAG 1 cut(s) 84
BfuI GTATCC 1 cut(s) 32
BisI GCNGC 2 cut(s) 249, 524
BlsI GCNGC 2 cut(s) 250, 525
Bme1390I CCNGG 3 cut(s) 181, 356, 463
Bme18I GGWCC 1 cut(s) 153
BmeT110I CYCGRG 1 cut(s) 590
BmgT120I GGNCC 1 cut(s) 153
BmiI GGNNCC 1 cut(s) 178
BmrFI CCNGG 3 cut(s) 181, 356, 463
BmsI GCATC 1 cut(s) 124
BpmI CTGGAG 1 cut(s) 484
BpuEI CTTGAG 3 cut(s) 263, 344, 477
BpuMI CCSGG 1 cut(s) 181
BsaAI YACGTR 1 cut(s) 392
BsaHI GRCGYC 1 cut(s) 472
BsaJI CCNNGG 3 cut(s) 138, 461, 591
BsaXI ACNNNNNCTCC 2 cut(s) 457, 487
Bsc4I CCNNNNNNNGG 2 cut(s) 186, 325
Bse1I ACTGG 1 cut(s) 622
BseBI CCWGG 2 cut(s) 356, 463
BseDI CCNNGG 3 cut(s) 138, 461, 591
BseGI GGATG 2 cut(s) 134, 203
BseLI CCNNNNNNNGG 2 cut(s) 186, 325
BseMII CTCAG 1 cut(s) 594
BseNI ACTGG 1 cut(s) 622
BseRI GAGGAG 2 cut(s) 341, 481
BseYI CCCAGC 1 cut(s) 343
BshFI GGCC 1 cut(s) 441
BsiHKCI CYCGRG 1 cut(s) 590
BsiSI CCGG 1 cut(s) 180
BslFI GGGAC 2 cut(s) 145, 444
BslI CCNNNNNNNGG 2 cut(s) 186, 325
BsmAI GTCTC 3 cut(s) 94, 463, 479
BsmBI CGTCTC 2 cut(s) 463, 479
BsmFI GGGAC 2 cut(s) 145, 444
BsmI GAATGC 1 cut(s) 590
BsnI GGCC 1 cut(s) 441
BsoBI CYCGRG 1 cut(s) 590
Bsp143I GATC 3 cut(s) 176, 576, 620
BspACI CCGC 3 cut(s) 248, 299, 523
BspANI GGCC 1 cut(s) 441
BspCNI CTCAG 1 cut(s) 593
BspLI GGNNCC 1 cut(s) 178
BspMAI CTGCAG 1 cut(s) 88
BspPI GGATC 3 cut(s) 171, 184, 628
BsrI ACTGG 1 cut(s) 622
BssECI CCNNGG 3 cut(s) 138, 461, 591
BssMI GATC 3 cut(s) 176, 576, 620
BssNI GRCGYC 1 cut(s) 472
BssSI CACGAG 1 cut(s) 75
BssT1I CCWWGG 1 cut(s) 138
Bst2BI CACGAG 1 cut(s) 75
Bst2UI CCWGG 2 cut(s) 356, 463
Bst4CI ACNGT 1 cut(s) 659
Bst6I CTCTTC 1 cut(s) 624
BstACI GRCGYC 1 cut(s) 472
BstBAI YACGTR 1 cut(s) 392
BstDEI CTNAG 2 cut(s) 432, 580
BstF5I GGATG 2 cut(s) 134, 203
BstKTI GATC 3 cut(s) 179, 579, 623
BstMAI GTCTC 3 cut(s) 94, 463, 479
BstMBI GATC 3 cut(s) 176, 576, 620
BstNI CCWGG 2 cut(s) 356, 463
BstSCI CCNGG 3 cut(s) 179, 354, 461
BstSFI CTRYAG 1 cut(s) 84
BstX2I RGATCY 1 cut(s) 176
BstYI RGATCY 1 cut(s) 176
BsuI GTATCC 1 cut(s) 32
BsuRI GGCC 1 cut(s) 441
BtgZI GCGATG 1 cut(s) 101
BtsCI GGATG 2 cut(s) 134, 203
Cfr13I GGNCC 1 cut(s) 153
CviAII CATG 2 cut(s) 112, 624
DdeI CTNAG 2 cut(s) 432, 580
DpnI GATC 3 cut(s) 178, 578, 622
DpnII GATC 3 cut(s) 176, 576, 620
EaeI YGGCCR 1 cut(s) 439
Eam1104I CTCTTC 1 cut(s) 624
EarI CTCTTC 1 cut(s) 624
Eco130I CCWWGG 1 cut(s) 138
Eco47I GGWCC 1 cut(s) 153
Eco72I CACGTG 1 cut(s) 392
Eco88I CYCGRG 1 cut(s) 590
EcoRII CCWGG 2 cut(s) 354, 461
EcoT14I CCWWGG 1 cut(s) 138
EcoT22I ATGCAT 2 cut(s) 117, 380
ErhI CCWWGG 1 cut(s) 138
Esp3I CGTCTC 2 cut(s) 463, 479
FaeI CATG 2 cut(s) 115, 627
FaiI YATR 8 cut(s) 16, 18, 113, 287, 380, 510, 517, 625
FaqI GGGAC 2 cut(s) 145, 444
FatI CATG 2 cut(s) 111, 623
Fnu4HI GCNGC 2 cut(s) 249, 524
FokI GGATG 2 cut(s) 121, 190
Fsp4HI GCNGC 2 cut(s) 249, 524
FspBI CTAG 2 cut(s) 150, 339
GluI GCNGC 2 cut(s) 249, 524
GsaI CCCAGC 1 cut(s) 347
GsuI CTGGAG 1 cut(s) 484
HaeIII GGCC 1 cut(s) 441
HapII CCGG 1 cut(s) 180
Hin1I GRCGYC 1 cut(s) 472
Hin1II CATG 2 cut(s) 115, 627
HinfI GANTC 5 cut(s) 193, 260, 271, 302, 334
HpaII CCGG 1 cut(s) 180
HphI GGTGA 1 cut(s) 266
Hpy188I TCNGA 5 cut(s) 102, 224, 267, 403, 583
Hpy188III TCNNGA 3 cut(s) 280, 449, 569
Hpy99I CGWCG 2 cut(s) 217, 271
HpyAV CCTTC 2 cut(s) 23, 139
HpyCH4III ACNGT 1 cut(s) 659
HpyCH4IV ACGT 2 cut(s) 391, 472
HpyCH4V TGCA 5 cut(s) 80, 86, 115, 378, 429
HpyF3I CTNAG 2 cut(s) 432, 580
HpySE526I ACGT 2 cut(s) 391, 472
Hsp92I GRCGYC 1 cut(s) 472
Hsp92II CATG 2 cut(s) 115, 627
Kzo9I GATC 3 cut(s) 176, 576, 620
LmnI GCTCC 2 cut(s) 225, 451
LweI GCATC 1 cut(s) 124
MaeI CTAG 2 cut(s) 150, 339
MaeII ACGT 2 cut(s) 391, 472
MaeIII GTNAC 2 cut(s) 487, 566
MalI GATC 3 cut(s) 178, 578, 622
MboI GATC 3 cut(s) 176, 576, 620
MboII GAAGA 7 cut(s) 202, 244, 343, 628, 631, 641, 659
MflI RGATCY 1 cut(s) 176
MlsI TGGCCA 1 cut(s) 441
MluCI AATT 5 cut(s) 53, 198, 366, 404, 423
MluNI TGGCCA 1 cut(s) 441
MlyI GAGTC 3 cut(s) 254, 265, 296
MmeI TCCRAC 2 cut(s) 290, 343
MnlI CCTC 7 cut(s) 173, 177, 287, 319, 352, 459, 586
Mox20I TGGCCA 1 cut(s) 441
Mph1103I ATGCAT 2 cut(s) 117, 380
MscI TGGCCA 1 cut(s) 441
MseI TTAA 2 cut(s) 255, 531
Msp20I TGGCCA 1 cut(s) 441
MspI CCGG 1 cut(s) 180
MspR9I CCNGG 3 cut(s) 181, 356, 463
Mva1269I GAATGC 1 cut(s) 590
MvaI CCWGG 2 cut(s) 356, 463
NciI CCSGG 1 cut(s) 181
NdeII GATC 3 cut(s) 176, 576, 620
NlaIII CATG 2 cut(s) 115, 627
NlaIV GGNNCC 1 cut(s) 178
NmeAIII GCCGAG 1 cut(s) 23
NmuCI GTSAC 1 cut(s) 566
NsiI ATGCAT 2 cut(s) 117, 380
PctI GAATGC 1 cut(s) 590
PfeI GAWTC 2 cut(s) 193, 334
PfoI TCCNGGA 1 cut(s) 179
PkrI GCNGC 2 cut(s) 250, 525
PleI GAGTC 3 cut(s) 254, 265, 296
PmaCI CACGTG 1 cut(s) 392
PmlI CACGTG 1 cut(s) 392
PpsI GAGTC 3 cut(s) 254, 265, 296
Ppu21I YACGTR 1 cut(s) 392
Psp6I CCWGG 2 cut(s) 354, 461
PspCI CACGTG 1 cut(s) 392
PspFI CCCAGC 1 cut(s) 343
PspGI CCWGG 2 cut(s) 354, 461
PspN4I GGNNCC 1 cut(s) 178
PspPI GGNCC 1 cut(s) 153
PstI CTGCAG 1 cut(s) 88
PsuI RGATCY 1 cut(s) 176
SaqAI TTAA 2 cut(s) 255, 531
SatI GCNGC 2 cut(s) 249, 524
Sau3AI GATC 3 cut(s) 176, 576, 620
Sau96I GGNCC 1 cut(s) 153
SchI GAGTC 3 cut(s) 254, 265, 296
ScrFI CCNGG 3 cut(s) 181, 356, 463
SetI ASST 7 cut(s) 34, 155, 222, 279, 349, 394, 475
SfaNI GCATC 1 cut(s) 124
SfcI CTRYAG 1 cut(s) 84
SinI GGWCC 1 cut(s) 153
SmlI CTYRAG 3 cut(s) 278, 323, 492
SmoI CTYRAG 3 cut(s) 278, 323, 492
Sse9I AATT 5 cut(s) 53, 198, 366, 404, 423
SsiI CCGC 3 cut(s) 248, 299, 523
SspMI CTAG 2 cut(s) 150, 339
StyD4I CCNGG 3 cut(s) 179, 354, 461
StyI CCWWGG 1 cut(s) 138
TaaI ACNGT 1 cut(s) 659
TaiI ACGT 2 cut(s) 394, 475
TaqI TCGA 2 cut(s) 27, 384
TasI AATT 5 cut(s) 53, 198, 366, 404, 423
TauI GCSGC 2 cut(s) 251, 526
TfiI GAWTC 2 cut(s) 193, 334
Tru1I TTAA 2 cut(s) 255, 531
Tru9I TTAA 2 cut(s) 255, 531
TseFI GTSAC 1 cut(s) 566
Tsp45I GTSAC 1 cut(s) 566
TspDTI ATGAA 1 cut(s) 525
VpaK11BI GGWCC 1 cut(s) 153
XapI RAATTY 1 cut(s) 366
XspI CTAG 2 cut(s) 150, 339
ZraI GACGTC 1 cut(s) 473
Zsp2I ATGCAT 2 cut(s) 117, 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.