Rh2DG424000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000520
Physical Location & Seq
Forward (+)
61456933 .. 61457472
540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG424000.1

Sequence Viewer

Length: 483 bp
ATGGACATTTCTGGAATCACAGCGAGATCAGCAGCCGGCGGTAAGGAGAAGGCGAAGGAGAAGCCTGAAGAAGGGTGTCGGATTTGTGGTGATGACCACCAACACATTCGTTGCCCGTACTTGGAGTGTGTTCCACCTGGTGCAACTGTTGGCCCTGACTACCTAGTAATATGTGACTTGTGTCGTTATGAGTTATTGCAGCCTACTGCGACTCATTGTTGGATGTGCGGTAAGTGGGGAGGACGTGCGGTGGAGGCGTCTACCTTCGATGAGAGCTATCGTAACCACCTAGAAGAAGATTACATAGCAGAACCAATTGTCTATGCAGAGTACATAGACTTTGACAATTACACAGCACCAGAACCAGAGCAAGTTCAGAAGACAGAACATCAGGATCGCATAAAGAAACATCATACAAAAATTAAAAGTCGGACTCAGAGGGAACACAAAAATAAAAGCCAGACTCTGAAGAAAAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

18.37

Weight (kDa)

6.7

Isoelectric Point (pI)

43.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 260
AciI CCGC 3 cut(s) 39, 228, 248
AclWI GGATC 1 cut(s) 402
AcuI CTGAAG 1 cut(s) 87
AcyI GRCGYC 1 cut(s) 257
AdeI CACNNNGTG 1 cut(s) 140
AfaI GTAC 2 cut(s) 119, 332
AfiI CCNNNNNNNGG 2 cut(s) 71, 121
AjiI CACGTC 1 cut(s) 245
AjnI CCWGG 1 cut(s) 136
AluBI AGCT 1 cut(s) 276
AluI AGCT 1 cut(s) 276
AlwI GGATC 1 cut(s) 402
AlwNI CAGNNNCTG 1 cut(s) 466
AoxI GGCC 1 cut(s) 151
ApeKI GCWGC 2 cut(s) 32, 199
AspS9I GGNCC 1 cut(s) 152
AsuHPI GGTGA 1 cut(s) 101
BbsI GAAGAC 1 cut(s) 386
BbvI GCAGC 2 cut(s) 44, 211
BciT130I CCWGG 1 cut(s) 138
BfaI CTAG 2 cut(s) 164, 290
BisI GCNGC 2 cut(s) 33, 200
BlsI GCNGC 2 cut(s) 34, 201
Bme1390I CCNGG 1 cut(s) 138
BmgBI CACGTC 1 cut(s) 245
BmgT120I GGNCC 1 cut(s) 152
BmrFI CCNGG 1 cut(s) 138
BoxI GACNNNNGTC 1 cut(s) 180
BpiI GAAGAC 1 cut(s) 386
BsaHI GRCGYC 1 cut(s) 257
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 121
Bse118I RCCGGY 1 cut(s) 35
BseBI CCWGG 1 cut(s) 138
BseGI GGATG 1 cut(s) 228
BseLI CCNNNNNNNGG 2 cut(s) 71, 121
BseMII CTCAG 1 cut(s) 449
BseXI GCAGC 2 cut(s) 44, 211
BshFI GGCC 1 cut(s) 153
BsiSI CCGG 1 cut(s) 36
BslI CCNNNNNNNGG 2 cut(s) 71, 121
BsnI GGCC 1 cut(s) 153
Bsp143I GATC 2 cut(s) 26, 394
BspACI CCGC 3 cut(s) 39, 228, 248
BspANI GGCC 1 cut(s) 153
BspCNI CTCAG 1 cut(s) 448
BspPI GGATC 1 cut(s) 402
BsrFI RCCGGY 1 cut(s) 35
BssAI RCCGGY 1 cut(s) 35
BssMI GATC 2 cut(s) 26, 394
BssNI GRCGYC 1 cut(s) 257
Bst2UI CCWGG 1 cut(s) 138
Bst4CI ACNGT 1 cut(s) 148
BstACI GRCGYC 1 cut(s) 257
BstC8I GCNNGC 1 cut(s) 37
BstDEI CTNAG 1 cut(s) 435
BstENI CCTNNNNNAGG 1 cut(s) 69
BstF5I GGATG 1 cut(s) 228
BstKTI GATC 2 cut(s) 29, 397
BstMBI GATC 2 cut(s) 26, 394
BstMWI GCNNNNNNNGC 2 cut(s) 29, 254
BstNI CCWGG 1 cut(s) 138
BstPAI GACNNNNGTC 1 cut(s) 180
BstSCI CCNGG 1 cut(s) 136
BstV1I GCAGC 2 cut(s) 44, 211
BstV2I GAAGAC 1 cut(s) 386
BsuRI GGCC 1 cut(s) 153
BtrI CACGTC 1 cut(s) 245
BtsCI GGATG 1 cut(s) 228
Cac8I GCNNGC 1 cut(s) 37
CaiI CAGNNNCTG 1 cut(s) 466
Cfr10I RCCGGY 1 cut(s) 35
Cfr13I GGNCC 1 cut(s) 152
CseI GACGC 1 cut(s) 246
CsiI ACCWGGT 1 cut(s) 136
Csp6I GTAC 2 cut(s) 118, 331
CviJI RGCY 6 cut(s) 35, 64, 153, 202, 276, 459
CviKI_1 RGCY 6 cut(s) 35, 64, 153, 202, 276, 459
CviQI GTAC 2 cut(s) 118, 331
DdeI CTNAG 1 cut(s) 435
DpnI GATC 2 cut(s) 28, 396
DpnII GATC 2 cut(s) 26, 394
DraIII CACNNNGTG 1 cut(s) 140
Eco57I CTGAAG 1 cut(s) 87
EcoNI CCTNNNNNAGG 1 cut(s) 69
EcoRII CCWGG 1 cut(s) 136
FaiI YATR 7 cut(s) 172, 189, 305, 324, 335, 401, 414
FblI GTMKAC 1 cut(s) 260
Fnu4HI GCNGC 2 cut(s) 33, 200
FokI GGATG 1 cut(s) 235
Fsp4HI GCNGC 2 cut(s) 33, 200
FspBI CTAG 2 cut(s) 164, 290
GluI GCNGC 2 cut(s) 33, 200
HaeIII GGCC 1 cut(s) 153
HapII CCGG 1 cut(s) 36
HgaI GACGC 1 cut(s) 246
Hin1I GRCGYC 1 cut(s) 257
HinfI GANTC 4 cut(s) 15, 211, 433, 463
HpaII CCGG 1 cut(s) 36
HphI GGTGA 1 cut(s) 101
Hpy166II GTNNAC 1 cut(s) 261
Hpy188I TCNGA 5 cut(s) 81, 378, 432, 438, 468
Hpy188III TCNNGA 2 cut(s) 12, 392
Hpy8I GTNNAC 1 cut(s) 261
HpyAV CCTTC 4 cut(s) 43, 49, 65, 274
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4IV ACGT 1 cut(s) 244
HpyCH4V TGCA 3 cut(s) 143, 199, 326
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 254
HpyF3I CTNAG 1 cut(s) 435
HpySE526I ACGT 1 cut(s) 244
Hsp92I GRCGYC 1 cut(s) 257
KroI GCCGGC 1 cut(s) 35
KroNI GCCGGC 1 cut(s) 37
Kzo9I GATC 2 cut(s) 26, 394
LpnPI CCDG 9 cut(s) 49, 78, 123, 150, 168, 372, 377, 378, 473
Lsp1109I GCAGC 2 cut(s) 44, 211
MabI ACCWGGT 1 cut(s) 136
MaeI CTAG 2 cut(s) 164, 290
MaeII ACGT 1 cut(s) 244
MaeIII GTNAC 2 cut(s) 173, 281
MalI GATC 2 cut(s) 28, 396
MboI GATC 2 cut(s) 26, 394
MboII GAAGA 5 cut(s) 80, 305, 308, 391, 481
MfeI CAATTG 1 cut(s) 315
MluCI AATT 3 cut(s) 315, 346, 420
MlyI GAGTC 3 cut(s) 205, 427, 457
MmeI TCCRAC 3 cut(s) 59, 200, 410
MnlI CCTC 3 cut(s) 233, 247, 432
MroNI GCCGGC 1 cut(s) 35
MseI TTAA 1 cut(s) 423
MspI CCGG 1 cut(s) 36
MspR9I CCNGG 1 cut(s) 138
MunI CAATTG 1 cut(s) 315
MvaI CCWGG 1 cut(s) 138
MwoI GCNNNNNNNGC 2 cut(s) 29, 254
NaeI GCCGGC 1 cut(s) 37
NdeII GATC 2 cut(s) 26, 394
NgoMIV GCCGGC 1 cut(s) 35
NmuCI GTSAC 1 cut(s) 173
PdiI GCCGGC 1 cut(s) 37
PfeI GAWTC 1 cut(s) 15
PkrI GCNGC 2 cut(s) 34, 201
PleI GAGTC 3 cut(s) 205, 427, 457
PpsI GAGTC 3 cut(s) 205, 427, 457
PshAI GACNNNNGTC 1 cut(s) 180
Psp6I CCWGG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 136
PspPI GGNCC 1 cut(s) 152
PstNI CAGNNNCTG 1 cut(s) 466
RsaI GTAC 2 cut(s) 119, 332
RsaNI GTAC 2 cut(s) 118, 331
SaqAI TTAA 1 cut(s) 423
SatI GCNGC 2 cut(s) 33, 200
Sau3AI GATC 2 cut(s) 26, 394
Sau96I GGNCC 1 cut(s) 152
SchI GAGTC 3 cut(s) 205, 427, 457
ScrFI CCNGG 1 cut(s) 138
SetI ASST 6 cut(s) 139, 165, 247, 266, 278, 291
SexAI ACCWGGT 1 cut(s) 136
Sse9I AATT 3 cut(s) 315, 346, 420
SsiI CCGC 3 cut(s) 39, 228, 248
SspMI CTAG 2 cut(s) 164, 290
StyD4I CCNGG 1 cut(s) 136
TaaI ACNGT 1 cut(s) 148
TaiI ACGT 1 cut(s) 247
TaqI TCGA 1 cut(s) 267
TasI AATT 3 cut(s) 315, 346, 420
TatI WGTACW 1 cut(s) 330
TfiI GAWTC 1 cut(s) 15
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TseFI GTSAC 1 cut(s) 173
TseI GCWGC 2 cut(s) 32, 199
Tsp45I GTSAC 1 cut(s) 173
XagI CCTNNNNNAGG 1 cut(s) 69
XmiI GTMKAC 1 cut(s) 260
XspI CTAG 2 cut(s) 164, 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.