Rh2AG403700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
60105367 .. 60106035
669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG403700.1

Sequence Viewer

Length: 240 bp
ATGGACAGCAATTTCTCAGGGGCGATTGCAAAATTGAGAGGAGCGTCGGACGATGAGATCTCGATGGGGCAGCGCGGCGATTTGATGAAGCCCAATAACTCCGAGGGCATCAAGTCCAAAGAACCAAAGGCTACTGGAGTATCAGACAAAAACAATAAAAAAGTGGCTGCAGTTGCTTCTTCTTCTACTTCTGTCGTCACCGAAAGAGGAGGATGTCAGATCTGCGGTCATGAATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

8.17

Weight (kDa)

7.78

Isoelectric Point (pI)

19.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 75
AciI CCGC 2 cut(s) 75, 225
ApeKI GCWGC 2 cut(s) 70, 167
AspLEI GCGC 1 cut(s) 75
AsuHPI GGTGA 1 cut(s) 190
BaeI ACNNNNGTAYC 2 cut(s) 123, 156
BbvI GCAGC 2 cut(s) 82, 154
BccI CCATC 1 cut(s) 58
BfmI CTRYAG 1 cut(s) 168
BglII AGATCT 2 cut(s) 57, 219
BisI GCNGC 3 cut(s) 71, 76, 168
BlsI GCNGC 3 cut(s) 72, 77, 169
BmsI GCATC 1 cut(s) 117
BpmI CTGGAG 1 cut(s) 156
BsaJI CCNNGG 1 cut(s) 102
Bse1I ACTGG 1 cut(s) 139
BseDI CCNNGG 1 cut(s) 102
BseGI GGATG 1 cut(s) 218
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 1 cut(s) 139
BseRI GAGGAG 2 cut(s) 54, 222
BseXI GCAGC 2 cut(s) 82, 154
Bsh1236I CGCG 1 cut(s) 75
Bsp143I GATC 2 cut(s) 57, 219
BspACI CCGC 2 cut(s) 75, 225
BspCNI CTCAG 1 cut(s) 29
BspFNI CGCG 1 cut(s) 75
BspHI TCATGA 2 cut(s) 229, 236
BspMAI CTGCAG 1 cut(s) 172
BsrI ACTGG 1 cut(s) 139
BssECI CCNNGG 1 cut(s) 102
BssMI GATC 2 cut(s) 57, 219
BstDEI CTNAG 1 cut(s) 16
BstF5I GGATG 1 cut(s) 218
BstFNI CGCG 1 cut(s) 75
BstHHI GCGC 1 cut(s) 75
BstKTI GATC 2 cut(s) 60, 222
BstMBI GATC 2 cut(s) 57, 219
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstSFI CTRYAG 1 cut(s) 168
BstUI CGCG 1 cut(s) 75
BstV1I GCAGC 2 cut(s) 82, 154
BstX2I RGATCY 2 cut(s) 57, 219
BstYI RGATCY 2 cut(s) 57, 219
BtsCI GGATG 1 cut(s) 218
CciI TCATGA 2 cut(s) 229, 236
CfoI GCGC 1 cut(s) 75
CseI GACGC 1 cut(s) 33
CviAII CATG 2 cut(s) 230, 237
CviJI RGCY 3 cut(s) 91, 131, 167
CviKI_1 RGCY 3 cut(s) 91, 131, 167
DdeI CTNAG 1 cut(s) 16
DpnI GATC 2 cut(s) 59, 221
DpnII GATC 2 cut(s) 57, 219
FaeI CATG 2 cut(s) 233, 240
FaiI YATR 2 cut(s) 231, 238
FatI CATG 2 cut(s) 229, 236
Fnu4HI GCNGC 3 cut(s) 71, 76, 168
FokI GGATG 1 cut(s) 225
Fsp4HI GCNGC 3 cut(s) 71, 76, 168
GlaI GCGC 1 cut(s) 74
GluI GCNGC 3 cut(s) 71, 76, 168
GsuI CTGGAG 1 cut(s) 156
HgaI GACGC 1 cut(s) 33
HhaI GCGC 1 cut(s) 75
Hin1II CATG 2 cut(s) 233, 240
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HinfI GANTC 1 cut(s) 233
HphI GGTGA 1 cut(s) 190
Hpy188I TCNGA 4 cut(s) 49, 103, 145, 219
Hpy188III TCNNGA 3 cut(s) 61, 230, 237
Hpy99I CGWCG 1 cut(s) 49
HpyCH4V TGCA 2 cut(s) 29, 170
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
HpyF3I CTNAG 1 cut(s) 16
Hsp92II CATG 2 cut(s) 233, 240
HspAI GCGC 1 cut(s) 73
Kzo9I GATC 2 cut(s) 57, 219
LmnI GCTCC 1 cut(s) 41
LpnPI CCDG 2 cut(s) 3, 120
Lsp1109I GCAGC 2 cut(s) 82, 154
LweI GCATC 1 cut(s) 117
MaeIII GTNAC 1 cut(s) 196
MalI GATC 2 cut(s) 59, 221
MboI GATC 2 cut(s) 57, 219
MboII GAAGA 2 cut(s) 171, 174
MflI RGATCY 2 cut(s) 57, 219
MluCI AATT 2 cut(s) 10, 32
MmeI TCCRAC 1 cut(s) 27
MnlI CCTC 4 cut(s) 32, 97, 200, 203
MvnI CGCG 1 cut(s) 75
MwoI GCNNNNNNNGC 1 cut(s) 173
NdeII GATC 2 cut(s) 57, 219
NlaIII CATG 2 cut(s) 233, 240
NmuCI GTSAC 1 cut(s) 196
PagI TCATGA 2 cut(s) 229, 236
PfeI GAWTC 1 cut(s) 233
PkrI GCNGC 3 cut(s) 72, 77, 169
PstI CTGCAG 1 cut(s) 172
PsuI RGATCY 2 cut(s) 57, 219
SatI GCNGC 3 cut(s) 71, 76, 168
Sau3AI GATC 2 cut(s) 57, 219
SfaNI GCATC 1 cut(s) 117
SfcI CTRYAG 1 cut(s) 168
SgeI CNNG 6 cut(s) 30, 73, 86, 115, 124, 147
Sse9I AATT 2 cut(s) 10, 32
SsiI CCGC 2 cut(s) 75, 225
TaqI TCGA 1 cut(s) 62
TasI AATT 2 cut(s) 10, 32
TauI GCSGC 1 cut(s) 78
TfiI GAWTC 1 cut(s) 233
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 2 cut(s) 70, 167
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.