Rh6AG108100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000520
Physical Location & Seq
Forward (+)
15766324 .. 15766974
651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG108100.1

Sequence Viewer

Length: 447 bp
ATGGATATTTCTGGAATGAGATCTGCAGAGCAAGACTTCAACTGCCGTGTATCGGGTGAAGAGGATGGCAGGCTTAGCTTCACAGCGAGACCAGAAGCAGCCGGCAAGGAGAAGGCTGCAGCCACTGGAGTCATCGAAAGAGAAGGATTTTGTCGGATTTGTGGTGATGGACACCAACACATTATTCGTTGCCCGTACTTGGAGTGTGTTCCACCTGGTGCAACTGTTGGCCCTGACTATCTAGTAATATGTGACTCATGTGGTTTTGAATTATTGCAGCCTACTGCGGCTCATTGTTGGATGTGTGGTAAGTGGGGAGGACGTGCGGTGGAGGCGTCTACCGTCGATGAGAGGTATCGTAACCACCTAGAAGAATATTACATAGAAGAACCAATTATCTATGCTGAGTACATAGACATAGACAATCACACAGCACAATCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.45

Weight (kDa)

4.68

Isoelectric Point (pI)

51.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 338
AciI CCGC 2 cut(s) 287, 326
AcyI GRCGYC 1 cut(s) 335
AdeI CACNNNGTG 1 cut(s) 218
AfaI GTAC 2 cut(s) 197, 410
AfiI CCNNNNNNNGG 2 cut(s) 52, 199
AgsI TTSAA 2 cut(s) 40, 269
AjiI CACGTC 1 cut(s) 323
AjnI CCWGG 1 cut(s) 214
AjuI GAANNNNNNNTTGG 2 cut(s) 168, 200
AluBI AGCT 1 cut(s) 78
AluI AGCT 1 cut(s) 78
Alw26I GTCTC 1 cut(s) 82
AlwNI CAGNNNCTG 1 cut(s) 125
AoxI GGCC 1 cut(s) 229
ApeKI GCWGC 4 cut(s) 98, 116, 119, 277
AspS9I GGNCC 1 cut(s) 230
AsuHPI GGTGA 2 cut(s) 68, 176
BbvI GCAGC 4 cut(s) 103, 110, 131, 289
BccI CCATC 2 cut(s) 59, 161
BceAI ACGGC 1 cut(s) 30
BciT130I CCWGG 1 cut(s) 216
BcoDI GTCTC 1 cut(s) 82
BfaI CTAG 2 cut(s) 242, 368
BfmI CTRYAG 2 cut(s) 24, 117
BglII AGATCT 1 cut(s) 20
BisI GCNGC 5 cut(s) 99, 117, 120, 278, 288
BlpI GCTNAGC 1 cut(s) 74
BlsI GCNGC 5 cut(s) 100, 118, 121, 279, 289
Bme1390I CCNGG 1 cut(s) 216
BmgBI CACGTC 1 cut(s) 323
BmgT120I GGNCC 1 cut(s) 230
BmrFI CCNGG 1 cut(s) 216
BpmI CTGGAG 1 cut(s) 147
Bpu1102I GCTNAGC 1 cut(s) 74
BsaHI GRCGYC 1 cut(s) 335
BsaI GGTCTC 1 cut(s) 82
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 199
Bse118I RCCGGY 1 cut(s) 101
Bse1I ACTGG 1 cut(s) 130
BseBI CCWGG 1 cut(s) 216
BseGI GGATG 2 cut(s) 70, 306
BseLI CCNNNNNNNGG 2 cut(s) 52, 199
BseMII CTCAG 1 cut(s) 396
BseNI ACTGG 1 cut(s) 130
BseXI GCAGC 4 cut(s) 103, 110, 131, 289
BshFI GGCC 1 cut(s) 231
BsiSI CCGG 1 cut(s) 102
BslI CCNNNNNNNGG 2 cut(s) 52, 199
BsmAI GTCTC 1 cut(s) 82
BsnI GGCC 1 cut(s) 231
Bso31I GGTCTC 1 cut(s) 82
Bsp143I GATC 1 cut(s) 20
Bsp1720I GCTNAGC 1 cut(s) 74
BspACI CCGC 2 cut(s) 287, 326
BspANI GGCC 1 cut(s) 231
BspCNI CTCAG 1 cut(s) 397
BspMAI CTGCAG 2 cut(s) 28, 121
BspTNI GGTCTC 1 cut(s) 82
BsrFI RCCGGY 1 cut(s) 101
BsrI ACTGG 1 cut(s) 130
BssAI RCCGGY 1 cut(s) 101
BssMI GATC 1 cut(s) 20
BssNI GRCGYC 1 cut(s) 335
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 2 cut(s) 226, 343
Bst6I CTCTTC 1 cut(s) 54
BstACI GRCGYC 1 cut(s) 335
BstC8I GCNNGC 2 cut(s) 71, 103
BstDEI CTNAG 2 cut(s) 74, 405
BstF5I GGATG 2 cut(s) 70, 306
BstKTI GATC 1 cut(s) 23
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 1 cut(s) 20
BstMWI GCNNNNNNNGC 2 cut(s) 75, 332
BstNI CCWGG 1 cut(s) 216
BstSCI CCNGG 1 cut(s) 214
BstSFI CTRYAG 2 cut(s) 24, 117
BstV1I GCAGC 4 cut(s) 103, 110, 131, 289
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
BsuRI GGCC 1 cut(s) 231
BtrI CACGTC 1 cut(s) 323
BtsCI GGATG 2 cut(s) 70, 306
BtsIMutI CAGTG 1 cut(s) 123
Cac8I GCNNGC 2 cut(s) 71, 103
CaiI CAGNNNCTG 1 cut(s) 125
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 230
CseI GACGC 1 cut(s) 324
CsiI ACCWGGT 1 cut(s) 214
Csp6I GTAC 2 cut(s) 196, 409
CviAII CATG 1 cut(s) 258
CviJI RGCY 8 cut(s) 73, 78, 101, 116, 122, 231, 280, 290
CviKI_1 RGCY 8 cut(s) 73, 78, 101, 116, 122, 231, 280, 290
CviQI GTAC 2 cut(s) 196, 409
DdeI CTNAG 2 cut(s) 74, 405
DpnI GATC 1 cut(s) 22
DpnII GATC 1 cut(s) 20
DraIII CACNNNGTG 1 cut(s) 218
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco31I GGTCTC 1 cut(s) 82
EcoRII CCWGG 1 cut(s) 214
FaeI CATG 1 cut(s) 261
FaiI YATR 6 cut(s) 250, 259, 383, 402, 413, 419
FatI CATG 1 cut(s) 257
FblI GTMKAC 1 cut(s) 338
Fnu4HI GCNGC 5 cut(s) 99, 117, 120, 278, 288
FokI GGATG 2 cut(s) 77, 313
Fsp4HI GCNGC 5 cut(s) 99, 117, 120, 278, 288
FspBI CTAG 2 cut(s) 242, 368
GluI GCNGC 5 cut(s) 99, 117, 120, 278, 288
GsuI CTGGAG 1 cut(s) 147
HaeIII GGCC 1 cut(s) 231
HapII CCGG 1 cut(s) 102
HgaI GACGC 1 cut(s) 324
Hin1I GRCGYC 1 cut(s) 335
Hin1II CATG 1 cut(s) 261
HinfI GANTC 2 cut(s) 129, 254
HpaII CCGG 1 cut(s) 102
HphI GGTGA 2 cut(s) 68, 176
Hpy166II GTNNAC 1 cut(s) 339
Hpy188I TCNGA 2 cut(s) 156, 442
Hpy188III TCNNGA 1 cut(s) 12
Hpy8I GTNNAC 1 cut(s) 339
Hpy99I CGWCG 1 cut(s) 347
HpyAV CCTTC 2 cut(s) 106, 137
HpyCH4III ACNGT 2 cut(s) 226, 343
HpyCH4IV ACGT 1 cut(s) 322
HpyCH4V TGCA 4 cut(s) 26, 119, 221, 277
HpyF10VI GCNNNNNNNGC 2 cut(s) 75, 332
HpyF3I CTNAG 2 cut(s) 74, 405
HpySE526I ACGT 1 cut(s) 322
Hsp92I GRCGYC 1 cut(s) 335
Hsp92II CATG 1 cut(s) 261
KroI GCCGGC 1 cut(s) 101
KroNI GCCGGC 1 cut(s) 103
Kzo9I GATC 1 cut(s) 20
LpnPI CCDG 7 cut(s) 55, 105, 111, 115, 201, 228, 246
Lsp1109I GCAGC 4 cut(s) 103, 110, 131, 289
MabI ACCWGGT 1 cut(s) 214
MaeI CTAG 2 cut(s) 242, 368
MaeII ACGT 1 cut(s) 322
MaeIII GTNAC 2 cut(s) 251, 359
MalI GATC 1 cut(s) 22
MboI GATC 1 cut(s) 20
MboII GAAGA 3 cut(s) 71, 383, 398
MflI RGATCY 1 cut(s) 20
MluCI AATT 2 cut(s) 269, 393
MlyI GAGTC 2 cut(s) 138, 248
MmeI TCCRAC 2 cut(s) 134, 278
MnlI CCTC 4 cut(s) 55, 311, 325, 345
MroNI GCCGGC 1 cut(s) 101
MspI CCGG 1 cut(s) 102
MspR9I CCNGG 1 cut(s) 216
MvaI CCWGG 1 cut(s) 216
MwoI GCNNNNNNNGC 2 cut(s) 75, 332
NaeI GCCGGC 1 cut(s) 103
NdeII GATC 1 cut(s) 20
NgoMIV GCCGGC 1 cut(s) 101
NlaIII CATG 1 cut(s) 261
NmuCI GTSAC 1 cut(s) 251
PdiI GCCGGC 1 cut(s) 103
PkrI GCNGC 5 cut(s) 100, 118, 121, 279, 289
PleI GAGTC 2 cut(s) 137, 248
PpsI GAGTC 2 cut(s) 137, 248
Psp6I CCWGG 1 cut(s) 214
PspGI CCWGG 1 cut(s) 214
PspPI GGNCC 1 cut(s) 230
PstI CTGCAG 2 cut(s) 28, 121
PstNI CAGNNNCTG 1 cut(s) 125
PsuI RGATCY 1 cut(s) 20
RsaI GTAC 2 cut(s) 197, 410
RsaNI GTAC 2 cut(s) 196, 409
SatI GCNGC 5 cut(s) 99, 117, 120, 278, 288
Sau3AI GATC 1 cut(s) 20
Sau96I GGNCC 1 cut(s) 230
SchI GAGTC 2 cut(s) 138, 248
ScrFI CCNGG 1 cut(s) 216
SetI ASST 5 cut(s) 80, 217, 325, 356, 369
SexAI ACCWGGT 1 cut(s) 214
SfcI CTRYAG 2 cut(s) 24, 117
Sse9I AATT 2 cut(s) 269, 393
SsiI CCGC 2 cut(s) 287, 326
SspI AATATT 1 cut(s) 377
SspMI CTAG 2 cut(s) 242, 368
StyD4I CCNGG 1 cut(s) 214
TaaI ACNGT 2 cut(s) 226, 343
TaiI ACGT 1 cut(s) 325
TaqI TCGA 2 cut(s) 135, 345
TasI AATT 2 cut(s) 269, 393
TatI WGTACW 1 cut(s) 408
TauI GCSGC 1 cut(s) 290
TscAI CASTG 1 cut(s) 130
TseFI GTSAC 1 cut(s) 251
TseI GCWGC 4 cut(s) 98, 116, 119, 277
Tsp45I GTSAC 1 cut(s) 251
TspRI CASTG 1 cut(s) 130
XmiI GTMKAC 1 cut(s) 338
XspI CTAG 2 cut(s) 242, 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.