Rmu_sc0009440.1_g000007

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009440.1
OG0000520
Physical Location & Seq
Reverse (-)
32908 .. 34350
1443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009440.1_g000007.1.cds

Sequence Viewer

Length: 702 bp
atgtctctgatgatagagaaaccagccggcaaggaggtgggctgcgacccggcgcaactggcgaaacgcggatggctcctcaagggcgacgacctcagagagccgacctgcatacgtatgttgccaatgaaaaacaaggacgacgacgagatctgggttccggcacagtactgtaacaagcctgaagaacctcctagtgatgaagagctaaaacgcctgtctcaccttttggcagaagaaccacacaagctcacaaaggacgaatcaaccatcctatgtcgctttctccctaccccgaagtttgatgaactcttctttaaacgggcaagggagaagaaagccagcaaatccaaagaaccaaaggcttctattctgtttgtctatgaaggaggtggagatagtctgcacaattgcaggatttgtggcaagaaggaccactttgatgtagattgctcttacatgaactttgtccctcagggtgtaaatgttggccccgagtatatggtggtgtgtcggatatgtggtcatagggttagccagcctgttggagattgtcaggcatgtggtacggagggaggacgtgctgttatgaaggtgtgtattttttgtttatgccttggtgaccacttgcctgaggactgcccacgcacaaagagacataagactctatccaaatcagaagatgcattgatcataagctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

26.23

Weight (kDa)

7.0

Isoelectric Point (pI)

57.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 116
AccII CGCG 1 cut(s) 69
AciI CCGC 1 cut(s) 69
AcuI CTGAAG 1 cut(s) 204
AfaI GTAC 2 cut(s) 170, 568
AjiI CACGTC 1 cut(s) 581
AluBI AGCT 3 cut(s) 208, 250, 699
AluI AGCT 3 cut(s) 208, 250, 699
Alw26I GTCTC 3 cut(s) 9, 225, 649
Ama87I CYCGRG 1 cut(s) 494
AoxI GGCC 1 cut(s) 490
ApeKI GCWGC 1 cut(s) 42
AspLEI GCGC 1 cut(s) 55
AspS9I GGNCC 2 cut(s) 433, 491
AsuC2I CCSGG 1 cut(s) 50
AsuHPI GGTGA 2 cut(s) 215, 632
AvaI CYCGRG 1 cut(s) 494
AvaII GGWCC 1 cut(s) 433
AxyI CCTNAGG 2 cut(s) 474, 633
BbvI GCAGC 1 cut(s) 29
BccI CCATC 2 cut(s) 66, 278
BclI TGATCA 1 cut(s) 690
BcnI CCSGG 1 cut(s) 50
BcoDI GTCTC 3 cut(s) 9, 225, 649
BfaI CTAG 1 cut(s) 195
BfuAI ACCTGC 1 cut(s) 116
BglII AGATCT 1 cut(s) 150
BisI GCNGC 1 cut(s) 43
BlsI GCNGC 1 cut(s) 44
BmcAI AGTACT 1 cut(s) 170
Bme1390I CCNGG 1 cut(s) 50
Bme18I GGWCC 1 cut(s) 433
BmeT110I CYCGRG 1 cut(s) 494
BmgBI CACGTC 1 cut(s) 581
BmgT120I GGNCC 2 cut(s) 433, 491
BmiI GGNNCC 3 cut(s) 77, 159, 493
BmrFI CCNGG 1 cut(s) 50
BmsI GCATC 1 cut(s) 673
BpuEI CTTGAG 1 cut(s) 65
BpuMI CCSGG 1 cut(s) 50
BsaAI YACGTR 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 616
Bse118I RCCGGY 1 cut(s) 26
Bse1I ACTGG 1 cut(s) 63
Bse21I CCTNAGG 2 cut(s) 474, 633
BseDI CCNNGG 1 cut(s) 616
BseGI GGATG 2 cut(s) 77, 270
BseMII CTCAG 3 cut(s) 109, 488, 624
BseNI ACTGG 1 cut(s) 63
BseRI GAGGAG 1 cut(s) 68
BseXI GCAGC 1 cut(s) 29
BsgI GTGCAG 1 cut(s) 389
Bsh1236I CGCG 1 cut(s) 69
BshFI GGCC 1 cut(s) 492
BsiHKCI CYCGRG 1 cut(s) 494
BsiSI CCGG 3 cut(s) 27, 50, 161
BslFI GGGAC 1 cut(s) 455
BsmAI GTCTC 3 cut(s) 9, 225, 649
BsmFI GGGAC 1 cut(s) 455
BsnI GGCC 1 cut(s) 492
BsoBI CYCGRG 1 cut(s) 494
Bsp143I GATC 2 cut(s) 150, 690
BspACI CCGC 1 cut(s) 69
BspANI GGCC 1 cut(s) 492
BspCNI CTCAG 3 cut(s) 108, 487, 625
BspFNI CGCG 1 cut(s) 69
BspLI GGNNCC 3 cut(s) 77, 159, 493
BspMI ACCTGC 1 cut(s) 116
BspQI GCTCTTC 1 cut(s) 198
BsrFI RCCGGY 1 cut(s) 26
BsrI ACTGG 1 cut(s) 63
BssAI RCCGGY 1 cut(s) 26
BssECI CCNNGG 1 cut(s) 616
BssMI GATC 2 cut(s) 150, 690
BssT1I CCWWGG 1 cut(s) 616
Bst4CI ACNGT 2 cut(s) 168, 173
Bst6I CTCTTC 2 cut(s) 198, 317
BstBAI YACGTR 1 cut(s) 116
BstC8I GCNNGC 3 cut(s) 28, 343, 539
BstDEI CTNAG 3 cut(s) 95, 474, 633
BstEII GGTNACC 1 cut(s) 620
BstF5I GGATG 2 cut(s) 77, 270
BstFNI CGCG 1 cut(s) 69
BstHHI GCGC 1 cut(s) 55
BstKTI GATC 2 cut(s) 153, 693
BstMAI GTCTC 3 cut(s) 9, 225, 649
BstMBI GATC 2 cut(s) 150, 690
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstNSI RCATGY 1 cut(s) 564
BstPI GGTNACC 1 cut(s) 620
BstSCI CCNGG 1 cut(s) 48
BstSNI TACGTA 1 cut(s) 116
BstUI CGCG 1 cut(s) 69
BstV1I GCAGC 1 cut(s) 29
BstX2I RGATCY 1 cut(s) 150
BstXI CCANNNNNNTGG 1 cut(s) 545
BstYI RGATCY 1 cut(s) 150
Bsu36I CCTNAGG 2 cut(s) 474, 633
BsuRI GGCC 1 cut(s) 492
BtrI CACGTC 1 cut(s) 581
BtsCI GGATG 2 cut(s) 77, 270
BveI ACCTGC 1 cut(s) 116
Cac8I GCNNGC 3 cut(s) 28, 343, 539
CfoI GCGC 1 cut(s) 55
Cfr10I RCCGGY 1 cut(s) 26
Cfr13I GGNCC 2 cut(s) 433, 491
Csp6I GTAC 2 cut(s) 169, 567
CviAII CATG 2 cut(s) 460, 561
CviQI GTAC 2 cut(s) 169, 567
DdeI CTNAG 3 cut(s) 95, 474, 633
DpnI GATC 2 cut(s) 152, 692
DpnII GATC 2 cut(s) 150, 690
DraI TTTAAA 1 cut(s) 319
Eam1104I CTCTTC 2 cut(s) 198, 317
EarI CTCTTC 2 cut(s) 198, 317
Eco105I TACGTA 1 cut(s) 116
Eco130I CCWWGG 1 cut(s) 616
Eco47I GGWCC 1 cut(s) 433
Eco57I CTGAAG 1 cut(s) 204
Eco81I CCTNAGG 2 cut(s) 474, 633
Eco88I CYCGRG 1 cut(s) 494
Eco91I GGTNACC 1 cut(s) 620
EcoO65I GGTNACC 1 cut(s) 620
EcoT14I CCWWGG 1 cut(s) 616
EcoT22I ATGCAT 1 cut(s) 688
ErhI CCWWGG 1 cut(s) 616
FaeI CATG 2 cut(s) 463, 564
FalI AAGNNNNNCTT 2 cut(s) 422, 454
FaqI GGGAC 1 cut(s) 455
FatI CATG 2 cut(s) 459, 560
FbaI TGATCA 1 cut(s) 690
Fnu4HI GCNGC 1 cut(s) 43
FokI GGATG 2 cut(s) 84, 257
Fsp4HI GCNGC 1 cut(s) 43
FspBI CTAG 1 cut(s) 195
GlaI GCGC 1 cut(s) 54
GluI GCNGC 1 cut(s) 43
HaeIII GGCC 1 cut(s) 492
HapII CCGG 3 cut(s) 27, 50, 161
HhaI GCGC 1 cut(s) 55
Hin1II CATG 2 cut(s) 463, 564
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HinfI GANTC 2 cut(s) 263, 664
HpaII CCGG 3 cut(s) 27, 50, 161
HphI GGTGA 2 cut(s) 215, 632
Hpy188I TCNGA 4 cut(s) 9, 98, 516, 679
Hpy99I CGWCG 3 cut(s) 92, 146, 149
HpyAV CCTTC 3 cut(s) 380, 424, 586
HpyCH4III ACNGT 2 cut(s) 168, 173
HpyCH4IV ACGT 2 cut(s) 115, 580
HpyCH4V TGCA 4 cut(s) 111, 406, 414, 686
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpyF3I CTNAG 3 cut(s) 95, 474, 633
HpySE526I ACGT 2 cut(s) 115, 580
Hsp92II CATG 2 cut(s) 463, 564
HspAI GCGC 1 cut(s) 53
KroI GCCGGC 1 cut(s) 26
KroNI GCCGGC 1 cut(s) 28
Ksp22I TGATCA 1 cut(s) 690
Kzo9I GATC 2 cut(s) 150, 690
LguI GCTCTTC 1 cut(s) 198
LmnI GCTCC 1 cut(s) 81
Lsp1109I GCAGC 1 cut(s) 29
LweI GCATC 1 cut(s) 673
MaeI CTAG 1 cut(s) 195
MaeII ACGT 2 cut(s) 115, 580
MaeIII GTNAC 2 cut(s) 173, 620
MalI GATC 2 cut(s) 152, 692
MboI GATC 2 cut(s) 150, 690
MboII GAAGA 6 cut(s) 197, 215, 248, 304, 346, 692
MfeI CAATTG 1 cut(s) 409
MflI RGATCY 1 cut(s) 150
MluCI AATT 1 cut(s) 409
MlyI GAGTC 1 cut(s) 658
MmeI TCCRAC 2 cut(s) 494, 526
MnlI CCTC 9 cut(s) 28, 89, 104, 201, 383, 483, 565, 569, 628
Mph1103I ATGCAT 1 cut(s) 688
MroNI GCCGGC 1 cut(s) 26
MseI TTAA 1 cut(s) 318
MslI CAYNNNNRTG 2 cut(s) 116, 441
MspI CCGG 3 cut(s) 27, 50, 161
MspR9I CCNGG 1 cut(s) 50
MunI CAATTG 1 cut(s) 409
MvnI CGCG 1 cut(s) 69
MwoI GCNNNNNNNGC 1 cut(s) 59
NaeI GCCGGC 1 cut(s) 28
NciI CCSGG 1 cut(s) 50
NdeII GATC 2 cut(s) 150, 690
NgoMIV GCCGGC 1 cut(s) 26
NlaIII CATG 2 cut(s) 463, 564
NlaIV GGNNCC 3 cut(s) 77, 159, 493
NmuCI GTSAC 1 cut(s) 620
NsiI ATGCAT 1 cut(s) 688
NspI RCATGY 1 cut(s) 564
PciSI GCTCTTC 1 cut(s) 198
PdiI GCCGGC 1 cut(s) 28
PfeI GAWTC 1 cut(s) 263
PkrI GCNGC 1 cut(s) 44
PleI GAGTC 1 cut(s) 658
PpsI GAGTC 1 cut(s) 658
Ppu21I YACGTR 1 cut(s) 116
PspEI GGTNACC 1 cut(s) 620
PspN4I GGNNCC 3 cut(s) 77, 159, 493
PspPI GGNCC 2 cut(s) 433, 491
PsuI RGATCY 1 cut(s) 150
RsaI GTAC 2 cut(s) 170, 568
RsaNI GTAC 2 cut(s) 169, 567
RseI CAYNNNNRTG 2 cut(s) 116, 441
SapI GCTCTTC 1 cut(s) 198
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 1 cut(s) 43
Sau3AI GATC 2 cut(s) 150, 690
Sau96I GGNCC 2 cut(s) 433, 491
ScaI AGTACT 1 cut(s) 170
SchI GAGTC 1 cut(s) 658
ScrFI CCNGG 1 cut(s) 50
SfaNI GCATC 1 cut(s) 673
SinI GGWCC 1 cut(s) 433
SmiMI CAYNNNNRTG 2 cut(s) 116, 441
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
SnaBI TACGTA 1 cut(s) 116
Sse9I AATT 1 cut(s) 409
SsiI CCGC 1 cut(s) 69
SspMI CTAG 1 cut(s) 195
StyD4I CCNGG 1 cut(s) 48
StyI CCWWGG 1 cut(s) 616
TaaI ACNGT 2 cut(s) 168, 173
TaiI ACGT 2 cut(s) 118, 583
TasI AATT 1 cut(s) 409
TatI WGTACW 1 cut(s) 168
TfiI GAWTC 1 cut(s) 263
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TseFI GTSAC 1 cut(s) 620
TseI GCWGC 1 cut(s) 42
Tsp45I GTSAC 1 cut(s) 620
TspDTI ATGAA 6 cut(s) 143, 216, 321, 399, 476, 605
TspGWI ACGGA 1 cut(s) 584
VpaK11BI GGWCC 1 cut(s) 433
XceI RCATGY 1 cut(s) 564
XspI CTAG 1 cut(s) 195
ZrmI AGTACT 1 cut(s) 170
Zsp2I ATGCAT 1 cut(s) 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.