FvH4_2g13461

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000520
Physical Location & Seq
Reverse (-)
11768898 .. 11769825
928 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g13461.t1

Sequence Viewer

Length: 423 bp
ATGGGGCACCGAGGTTTCTCTTCCTTTTGCGATAATAAAAAGTCCATCCAAAGTCCAAGTCTCCAAACTTCAGTGAACCGGTGCCAAGCCGAAAGGAGGAGATTGTGGCCACTCGAAGGCTTCAAGTCCGAAGAACCCAAGACTGCTGGAGTTGCCTCTTCTACTCATGTGGTCATCGGAGGAGAAGGATGTCGGATCTGTGGTGATGGCCACCACCACACCGTTGATTGCCCATTCTTGGAGTATGTTCCACCTGGTTCAACTGTTGGTGTTGGTTGGCTATTCGGTAATTTGCAGCCTACTGCGAAATGGTGTTGGTCCTGCGGTGAGTGGGAAGAACGAGCGGTGAAGGAGTCTACCGTTAATGAGTTCTGTCGCAACTACCAAGAAAATTTTTATGAACAAGTTCAATCTGAGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.81

Weight (kDa)

5.94

Isoelectric Point (pI)

60.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 6, 81
AccBSI CCGCTC 1 cut(s) 344
AccI GTMKAC 1 cut(s) 356
AciI CCGC 2 cut(s) 324, 344
AclWI GGATC 1 cut(s) 203
AcoI YGGCCR 2 cut(s) 107, 208
AcsI RAATTY 1 cut(s) 391
AcuI CTGAAG 1 cut(s) 54
AfiI CCNNNNNNNGG 3 cut(s) 96, 116, 238
AgeI ACCGGT 1 cut(s) 78
AgsI TTSAA 3 cut(s) 124, 261, 410
AjnI CCWGG 1 cut(s) 253
Alw26I GTCTC 1 cut(s) 65
AlwI GGATC 1 cut(s) 203
AoxI GGCC 2 cut(s) 107, 208
ApeKI GCWGC 1 cut(s) 295
ApoI RAATTY 1 cut(s) 391
ArsI GACNNNNNNTTYG 2 cut(s) 43, 75
AsiGI ACCGGT 1 cut(s) 78
Asp700I GAANNNNTTC 1 cut(s) 405
AspS9I GGNCC 1 cut(s) 318
AsuHPI GGTGA 3 cut(s) 215, 338, 358
AvaII GGWCC 1 cut(s) 318
BaeGI GKGCMC 1 cut(s) 9
BalI TGGCCA 2 cut(s) 109, 210
BanI GGYRCC 2 cut(s) 6, 81
BbvI GCAGC 1 cut(s) 307
BccI CCATC 2 cut(s) 53, 200
BciT130I CCWGG 1 cut(s) 255
BcoDI GTCTC 1 cut(s) 65
BisI GCNGC 1 cut(s) 296
BlsI GCNGC 1 cut(s) 297
Bme1390I CCNGG 1 cut(s) 255
Bme18I GGWCC 1 cut(s) 318
BmgT120I GGNCC 1 cut(s) 318
BmiI GGNNCC 2 cut(s) 8, 83
BmrFI CCNGG 1 cut(s) 255
BpmI CTGGAG 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 10
BsaWI WCCGGW 1 cut(s) 78
Bsc4I CCNNNNNNNGG 3 cut(s) 96, 116, 238
Bse118I RCCGGY 1 cut(s) 78
BseBI CCWGG 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 10
BseGI GGATG 2 cut(s) 45, 194
BseLI CCNNNNNNNGG 3 cut(s) 96, 116, 238
BseMII CTCAG 1 cut(s) 405
BseRI GAGGAG 2 cut(s) 112, 195
BseSI GKGCMC 1 cut(s) 9
BseXI GCAGC 1 cut(s) 307
BshFI GGCC 2 cut(s) 109, 210
BshNI GGYRCC 2 cut(s) 6, 81
BshTI ACCGGT 1 cut(s) 78
BsiSI CCGG 1 cut(s) 79
BslI CCNNNNNNNGG 3 cut(s) 96, 116, 238
BsmAI GTCTC 1 cut(s) 65
BsnI GGCC 2 cut(s) 109, 210
Bsp1286I GDGCHC 1 cut(s) 9
Bsp143I GATC 1 cut(s) 195
BspACI CCGC 2 cut(s) 324, 344
BspANI GGCC 2 cut(s) 109, 210
BspCNI CTCAG 1 cut(s) 406
BspLI GGNNCC 2 cut(s) 8, 83
BspPI GGATC 1 cut(s) 203
BspT107I GGYRCC 2 cut(s) 6, 81
BsrBI CCGCTC 1 cut(s) 344
BsrFI RCCGGY 1 cut(s) 78
BssAI RCCGGY 1 cut(s) 78
BssECI CCNNGG 1 cut(s) 10
BssMI GATC 1 cut(s) 195
Bst2UI CCWGG 1 cut(s) 255
Bst4CI ACNGT 3 cut(s) 223, 265, 361
Bst6I CTCTTC 2 cut(s) 25, 163
BstDEI CTNAG 1 cut(s) 414
BstF5I GGATG 2 cut(s) 45, 194
BstKTI GATC 1 cut(s) 198
BstMAI GTCTC 1 cut(s) 65
BstMBI GATC 1 cut(s) 195
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstNI CCWGG 1 cut(s) 255
BstSCI CCNGG 1 cut(s) 253
BstSLI GKGCMC 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 307
BstX2I RGATCY 1 cut(s) 195
BstYI RGATCY 1 cut(s) 195
BsuRI GGCC 2 cut(s) 109, 210
BtsCI GGATG 2 cut(s) 45, 194
BtsIMutI CAGTG 1 cut(s) 78
Cfr10I RCCGGY 1 cut(s) 78
Cfr13I GGNCC 1 cut(s) 318
CsiI ACCWGGT 1 cut(s) 253
CspAI ACCGGT 1 cut(s) 78
CviAII CATG 1 cut(s) 167
CviJI RGCY 6 cut(s) 89, 109, 120, 210, 280, 298
CviKI_1 RGCY 6 cut(s) 89, 109, 120, 210, 280, 298
DdeI CTNAG 1 cut(s) 414
DpnI GATC 1 cut(s) 197
DpnII GATC 1 cut(s) 195
EaeI YGGCCR 2 cut(s) 107, 208
Eam1104I CTCTTC 2 cut(s) 25, 163
EarI CTCTTC 2 cut(s) 25, 163
Eco47I GGWCC 1 cut(s) 318
Eco57I CTGAAG 1 cut(s) 54
EcoRII CCWGG 1 cut(s) 253
FaeI CATG 1 cut(s) 170
FaiI YATR 3 cut(s) 168, 246, 399
FatI CATG 1 cut(s) 166
FblI GTMKAC 1 cut(s) 356
Fnu4HI GCNGC 1 cut(s) 296
FokI GGATG 2 cut(s) 32, 201
Fsp4HI GCNGC 1 cut(s) 296
GluI GCNGC 1 cut(s) 296
GsuI CTGGAG 1 cut(s) 168
HaeIII GGCC 2 cut(s) 109, 210
HapII CCGG 1 cut(s) 79
Hin1II CATG 1 cut(s) 170
HinfI GANTC 1 cut(s) 353
HpaII CCGG 1 cut(s) 79
HphI GGTGA 3 cut(s) 215, 338, 358
Hpy166II GTNNAC 2 cut(s) 76, 357
Hpy188I TCNGA 4 cut(s) 130, 179, 195, 415
Hpy8I GTNNAC 2 cut(s) 76, 357
HpyAV CCTTC 3 cut(s) 110, 179, 343
HpyCH4III ACNGT 3 cut(s) 223, 265, 361
HpyCH4V TGCA 1 cut(s) 295
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 1 cut(s) 414
Hsp92II CATG 1 cut(s) 170
Kzo9I GATC 1 cut(s) 195
LpnPI CCDG 5 cut(s) 92, 132, 240, 267, 334
Lsp1109I GCAGC 1 cut(s) 307
MabI ACCWGGT 1 cut(s) 253
MalI GATC 1 cut(s) 197
MbiI CCGCTC 1 cut(s) 344
MboI GATC 1 cut(s) 195
MboII GAAGA 4 cut(s) 12, 143, 150, 347
MflI RGATCY 1 cut(s) 195
MhlI GDGCHC 1 cut(s) 9
MlsI TGGCCA 2 cut(s) 109, 210
MluCI AATT 2 cut(s) 289, 391
MluNI TGGCCA 2 cut(s) 109, 210
MlyI GAGTC 1 cut(s) 362
MmeI TCCRAC 1 cut(s) 173
MnlI CCTC 4 cut(s) 5, 90, 166, 173
Mox20I TGGCCA 2 cut(s) 109, 210
MroXI GAANNNNTTC 1 cut(s) 405
MscI TGGCCA 2 cut(s) 109, 210
MseI TTAA 2 cut(s) 363, 421
Msp20I TGGCCA 2 cut(s) 109, 210
MspI CCGG 1 cut(s) 79
MspR9I CCNGG 1 cut(s) 255
MvaI CCWGG 1 cut(s) 255
MwoI GCNNNNNNNGC 1 cut(s) 152
NdeII GATC 1 cut(s) 195
NlaIII CATG 1 cut(s) 170
NlaIV GGNNCC 2 cut(s) 8, 83
PdmI GAANNNNTTC 1 cut(s) 405
PinAI ACCGGT 1 cut(s) 78
PkrI GCNGC 1 cut(s) 297
PleI GAGTC 1 cut(s) 361
PpsI GAGTC 1 cut(s) 361
Psp6I CCWGG 1 cut(s) 253
PspGI CCWGG 1 cut(s) 253
PspN4I GGNNCC 2 cut(s) 8, 83
PspPI GGNCC 1 cut(s) 318
PsuI RGATCY 1 cut(s) 195
SaqAI TTAA 2 cut(s) 363, 421
SatI GCNGC 1 cut(s) 296
Sau3AI GATC 1 cut(s) 195
Sau96I GGNCC 1 cut(s) 318
SchI GAGTC 1 cut(s) 362
ScrFI CCNGG 1 cut(s) 255
SduI GDGCHC 1 cut(s) 9
SetI ASST 2 cut(s) 16, 256
SexAI ACCWGGT 1 cut(s) 253
SinI GGWCC 1 cut(s) 318
Sse9I AATT 2 cut(s) 289, 391
SsiI CCGC 2 cut(s) 324, 344
StyD4I CCNGG 1 cut(s) 253
TaaI ACNGT 3 cut(s) 223, 265, 361
TaqI TCGA 1 cut(s) 114
TasI AATT 2 cut(s) 289, 391
Tru1I TTAA 2 cut(s) 363, 421
Tru9I TTAA 2 cut(s) 363, 421
TscAI CASTG 1 cut(s) 78
TseI GCWGC 1 cut(s) 295
TspDTI ATGAA 1 cut(s) 414
TspRI CASTG 1 cut(s) 78
VpaK11BI GGWCC 1 cut(s) 318
XapI RAATTY 1 cut(s) 391
XmiI GTMKAC 1 cut(s) 356
XmnI GAANNNNTTC 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.