Rw2G032870

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000520
Physical Location & Seq
Forward (+)
53931943 .. 53933118
1176 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G032870.1

Sequence Viewer

Length: 378 bp
ATGGACTATTTCTCAGGGGCGATTGCAAAATTGAGAGGAGCGTCGGACGATGAGATCTCGATGGGGCAGCGCGGCGATTTGATGAAGCTCAATAGCTCCGAGGAGCCAGATCGCCTCGGGAAAAAACCCGGCAAGGACATTCCACACCCCGCAAAACCAGACATCAGTGCTGCTGCAGCCAGTCTCAACCCTAAATTAGCCGCCCTTTCTCTGGGAAACCGAGGGAAACGGTTGTGCTCTGGACCTAAAGGTCGTATTTCTCGAAGGCGCAATCGAAAAGATAAGGGAGCGTCCGTTGGTCTAGGTATTATCAATGGACTGAGATTTCAATATAGTATTATGTTTTTCACTATTTTGTTGGCTATGAGTGATAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.52

Weight (kDa)

10.32

Isoelectric Point (pI)

24.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 249
AccII CGCG 1 cut(s) 72
AciI CCGC 3 cut(s) 72, 150, 201
AfiI CCNNNNNNNGG 1 cut(s) 211
AgsI TTSAA 1 cut(s) 329
AluBI AGCT 2 cut(s) 88, 96
AluI AGCT 2 cut(s) 88, 96
Alw21I GWGCWC 1 cut(s) 239
Alw26I GTCTC 1 cut(s) 188
Ama87I CYCGRG 1 cut(s) 116
ApeKI GCWGC 4 cut(s) 67, 170, 173, 176
AspLEI GCGC 2 cut(s) 72, 270
AspS9I GGNCC 1 cut(s) 242
AsuC2I CCSGG 1 cut(s) 129
AvaI CYCGRG 1 cut(s) 116
AvaII GGWCC 1 cut(s) 242
Bbv12I GWGCWC 1 cut(s) 239
BbvI GCAGC 4 cut(s) 79, 157, 160, 188
BccI CCATC 1 cut(s) 55
BcnI CCSGG 1 cut(s) 129
BcoDI GTCTC 1 cut(s) 188
BfaI CTAG 1 cut(s) 302
BfmI CTRYAG 1 cut(s) 174
BglII AGATCT 1 cut(s) 54
BisI GCNGC 6 cut(s) 68, 73, 171, 174, 177, 201
BlsI GCNGC 6 cut(s) 69, 74, 172, 175, 178, 202
Bme1390I CCNGG 1 cut(s) 129
Bme18I GGWCC 1 cut(s) 242
BmeT110I CYCGRG 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 242
BmiI GGNNCC 1 cut(s) 105
BmrFI CCNGG 1 cut(s) 129
BpuMI CCSGG 1 cut(s) 129
BsaJI CCNNGG 3 cut(s) 99, 115, 220
BsaXI ACNNNNNCTCC 2 cut(s) 279, 309
Bsc4I CCNNNNNNNGG 1 cut(s) 211
Bse1I ACTGG 1 cut(s) 180
BseDI CCNNGG 3 cut(s) 99, 115, 220
BseLI CCNNNNNNNGG 1 cut(s) 211
BseMII CTCAG 2 cut(s) 27, 311
BseNI ACTGG 1 cut(s) 180
BseRI GAGGAG 2 cut(s) 51, 116
BseXI GCAGC 4 cut(s) 79, 157, 160, 188
Bsh1236I CGCG 1 cut(s) 72
BsiHKAI GWGCWC 1 cut(s) 239
BsiHKCI CYCGRG 1 cut(s) 116
BsiSI CCGG 1 cut(s) 129
BslI CCNNNNNNNGG 1 cut(s) 211
BsmAI GTCTC 1 cut(s) 188
BsoBI CYCGRG 1 cut(s) 116
Bsp1286I GDGCHC 1 cut(s) 239
Bsp143I GATC 2 cut(s) 54, 109
BspACI CCGC 3 cut(s) 72, 150, 201
BspCNI CTCAG 2 cut(s) 26, 312
BspFNI CGCG 1 cut(s) 72
BspLI GGNNCC 1 cut(s) 105
BspMAI CTGCAG 1 cut(s) 178
BsrI ACTGG 1 cut(s) 180
BssECI CCNNGG 3 cut(s) 99, 115, 220
BssMI GATC 2 cut(s) 54, 109
Bst4CI ACNGT 1 cut(s) 231
BstDEI CTNAG 2 cut(s) 13, 320
BstFNI CGCG 1 cut(s) 72
BstHHI GCGC 2 cut(s) 72, 270
BstKTI GATC 2 cut(s) 57, 112
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 2 cut(s) 54, 109
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstSCI CCNGG 1 cut(s) 127
BstSFI CTRYAG 1 cut(s) 174
BstUI CGCG 1 cut(s) 72
BstV1I GCAGC 4 cut(s) 79, 157, 160, 188
BstX2I RGATCY 1 cut(s) 54
BstYI RGATCY 1 cut(s) 54
BtsIMutI CAGTG 1 cut(s) 172
CfoI GCGC 2 cut(s) 72, 270
Cfr13I GGNCC 1 cut(s) 242
CseI GACGC 2 cut(s) 30, 279
CviJI RGCY 6 cut(s) 88, 96, 106, 179, 200, 362
CviKI_1 RGCY 6 cut(s) 88, 96, 106, 179, 200, 362
DdeI CTNAG 2 cut(s) 13, 320
DpnI GATC 2 cut(s) 56, 111
DpnII GATC 2 cut(s) 54, 109
DrdI GACNNNNNNGTC 1 cut(s) 249
DseDI GACNNNNNNGTC 1 cut(s) 249
Eco47I GGWCC 1 cut(s) 242
Eco88I CYCGRG 1 cut(s) 116
FaiI YATR 3 cut(s) 333, 341, 365
FauI CCCGC 1 cut(s) 157
Fnu4HI GCNGC 6 cut(s) 68, 73, 171, 174, 177, 201
Fsp4HI GCNGC 6 cut(s) 68, 73, 171, 174, 177, 201
FspBI CTAG 1 cut(s) 302
GlaI GCGC 2 cut(s) 71, 269
GluI GCNGC 6 cut(s) 68, 73, 171, 174, 177, 201
HapII CCGG 1 cut(s) 129
HgaI GACGC 2 cut(s) 30, 279
HhaI GCGC 2 cut(s) 72, 270
Hin6I GCGC 2 cut(s) 70, 268
HinP1I GCGC 2 cut(s) 70, 268
HpaII CCGG 1 cut(s) 129
Hpy188I TCNGA 2 cut(s) 46, 100
Hpy188III TCNNGA 4 cut(s) 58, 118, 240, 261
Hpy99I CGWCG 1 cut(s) 46
HpyAV CCTTC 1 cut(s) 258
HpyCH4III ACNGT 1 cut(s) 231
HpyCH4V TGCA 2 cut(s) 26, 176
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
HpyF3I CTNAG 2 cut(s) 13, 320
HspAI GCGC 2 cut(s) 70, 268
Kzo9I GATC 2 cut(s) 54, 109
LmnI GCTCC 4 cut(s) 38, 101, 103, 287
LpnPI CCDG 6 cut(s) 120, 142, 171, 193, 197, 225
Lsp1109I GCAGC 4 cut(s) 79, 157, 160, 188
MaeI CTAG 1 cut(s) 302
MalI GATC 2 cut(s) 56, 111
MboI GATC 2 cut(s) 54, 109
MflI RGATCY 1 cut(s) 54
MhlI GDGCHC 1 cut(s) 239
MluCI AATT 2 cut(s) 29, 194
MmeI TCCRAC 1 cut(s) 24
MnlI CCTC 4 cut(s) 29, 94, 125, 215
MspI CCGG 1 cut(s) 129
MspR9I CCNGG 1 cut(s) 129
MvnI CGCG 1 cut(s) 72
MwoI GCNNNNNNNGC 1 cut(s) 176
NciI CCSGG 1 cut(s) 129
NdeII GATC 2 cut(s) 54, 109
NlaIV GGNNCC 1 cut(s) 105
PcsI WCGNNNNNNNCGW 1 cut(s) 259
PkrI GCNGC 6 cut(s) 69, 74, 172, 175, 178, 202
PspN4I GGNNCC 1 cut(s) 105
PspPI GGNCC 1 cut(s) 242
PstI CTGCAG 1 cut(s) 178
PsuI RGATCY 1 cut(s) 54
SatI GCNGC 6 cut(s) 68, 73, 171, 174, 177, 201
Sau3AI GATC 2 cut(s) 54, 109
Sau96I GGNCC 1 cut(s) 242
ScrFI CCNGG 1 cut(s) 129
SduI GDGCHC 1 cut(s) 239
SetI ASST 5 cut(s) 90, 98, 247, 253, 307
SfcI CTRYAG 1 cut(s) 174
SinI GGWCC 1 cut(s) 242
Sse9I AATT 2 cut(s) 29, 194
SsiI CCGC 3 cut(s) 72, 150, 201
SspMI CTAG 1 cut(s) 302
StyD4I CCNGG 1 cut(s) 127
TaaI ACNGT 1 cut(s) 231
TaqI TCGA 3 cut(s) 59, 262, 274
TasI AATT 2 cut(s) 29, 194
TauI GCSGC 2 cut(s) 75, 203
TscAI CASTG 1 cut(s) 172
TseI GCWGC 4 cut(s) 67, 170, 173, 176
TspDTI ATGAA 1 cut(s) 98
TspGWI ACGGA 1 cut(s) 283
TspRI CASTG 1 cut(s) 172
VpaK11BI GGWCC 1 cut(s) 242
XspI CTAG 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.