Rh6BG103000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000520
Physical Location & Seq
Reverse (-)
15940284 .. 15941167
884 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG103000.1

Sequence Viewer

Length: 444 bp
ATGGATATTTCTGGAATGAGATCTGCAGAGCAAGACTTCAACTGCCGTGTATCGGGTGAAGAGGATGGCAGGCTTAGCTTCACAGCGAGACCAGAGGCAGCCGGCAAGGAGAAGGGTGCCACCGGAGTCATCGAAAGAGAAGGATTGTGTCGGATTTGTGGTGATGAACACCAACACATTATTCGTTGCCCGTACTTGGAGTGTGTTCCACCTGGTGCAACTGTTGGCCCTGACTATCTAGTAATATGTGACCTATGTCGTTATGAGTTAGTGCAGCCTACTGCGGCTCATTGTTGGATGTGCGGTGAGTGGGGAGGACGTGCGGTGGTGGCGTCTACCGTCGATGAGAGGTATCGTAACCACCTAGAAGAATATTACATAGCAGAACCAATTGTCTATGCTGAGTACATAGACATAGACAATCACACAGCACAATCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.43

Weight (kDa)

4.68

Isoelectric Point (pI)

36.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 116
AccI GTMKAC 1 cut(s) 335
AciI CCGC 3 cut(s) 284, 303, 323
AcyI GRCGYC 1 cut(s) 332
AdeI CACNNNGTG 1 cut(s) 215
AfaI GTAC 2 cut(s) 194, 407
AfiI CCNNNNNNNGG 2 cut(s) 52, 196
AgsI TTSAA 1 cut(s) 40
AjiI CACGTC 1 cut(s) 320
AjnI CCWGG 1 cut(s) 211
AjuI GAANNNNNNNTTGG 2 cut(s) 165, 197
AluBI AGCT 1 cut(s) 78
AluI AGCT 1 cut(s) 78
Alw26I GTCTC 1 cut(s) 82
AoxI GGCC 1 cut(s) 226
ApeKI GCWGC 2 cut(s) 98, 274
AspS9I GGNCC 1 cut(s) 227
AsuHPI GGTGA 3 cut(s) 68, 173, 317
BanI GGYRCC 1 cut(s) 116
BbvI GCAGC 2 cut(s) 110, 286
BccI CCATC 1 cut(s) 59
BceAI ACGGC 1 cut(s) 30
BciT130I CCWGG 1 cut(s) 213
BcoDI GTCTC 1 cut(s) 82
BfaI CTAG 2 cut(s) 239, 365
BfmI CTRYAG 1 cut(s) 24
BglII AGATCT 1 cut(s) 20
BisI GCNGC 3 cut(s) 99, 275, 285
BlpI GCTNAGC 1 cut(s) 74
BlsI GCNGC 3 cut(s) 100, 276, 286
Bme1390I CCNGG 1 cut(s) 213
BmgBI CACGTC 1 cut(s) 320
BmgT120I GGNCC 1 cut(s) 227
BmiI GGNNCC 1 cut(s) 118
BmrFI CCNGG 1 cut(s) 213
BoxI GACNNNNGTC 1 cut(s) 255
Bpu1102I GCTNAGC 1 cut(s) 74
BsaHI GRCGYC 1 cut(s) 332
BsaI GGTCTC 1 cut(s) 82
BsaWI WCCGGW 1 cut(s) 122
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 196
Bse118I RCCGGY 1 cut(s) 101
BseBI CCWGG 1 cut(s) 213
BseGI GGATG 2 cut(s) 70, 303
BseLI CCNNNNNNNGG 2 cut(s) 52, 196
BseMII CTCAG 1 cut(s) 393
BseXI GCAGC 2 cut(s) 110, 286
BsgI GTGCAG 1 cut(s) 293
BshFI GGCC 1 cut(s) 228
BshNI GGYRCC 1 cut(s) 116
BsiSI CCGG 2 cut(s) 102, 123
BslI CCNNNNNNNGG 2 cut(s) 52, 196
BsmAI GTCTC 1 cut(s) 82
BsnI GGCC 1 cut(s) 228
Bso31I GGTCTC 1 cut(s) 82
Bsp143I GATC 1 cut(s) 20
Bsp1720I GCTNAGC 1 cut(s) 74
BspACI CCGC 3 cut(s) 284, 303, 323
BspANI GGCC 1 cut(s) 228
BspCNI CTCAG 1 cut(s) 394
BspLI GGNNCC 1 cut(s) 118
BspMAI CTGCAG 1 cut(s) 28
BspT107I GGYRCC 1 cut(s) 116
BspTNI GGTCTC 1 cut(s) 82
BsrFI RCCGGY 1 cut(s) 101
BssAI RCCGGY 1 cut(s) 101
BssMI GATC 1 cut(s) 20
BssNI GRCGYC 1 cut(s) 332
Bst2UI CCWGG 1 cut(s) 213
Bst4CI ACNGT 2 cut(s) 223, 340
Bst6I CTCTTC 1 cut(s) 54
BstACI GRCGYC 1 cut(s) 332
BstC8I GCNNGC 2 cut(s) 71, 103
BstDEI CTNAG 2 cut(s) 74, 402
BstF5I GGATG 2 cut(s) 70, 303
BstKTI GATC 1 cut(s) 23
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 1 cut(s) 20
BstMWI GCNNNNNNNGC 2 cut(s) 75, 329
BstNI CCWGG 1 cut(s) 213
BstPAI GACNNNNGTC 1 cut(s) 255
BstSCI CCNGG 1 cut(s) 211
BstSFI CTRYAG 1 cut(s) 24
BstV1I GCAGC 2 cut(s) 110, 286
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
BsuRI GGCC 1 cut(s) 228
BtrI CACGTC 1 cut(s) 320
BtsCI GGATG 2 cut(s) 70, 303
Cac8I GCNNGC 2 cut(s) 71, 103
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 227
CseI GACGC 1 cut(s) 321
CsiI ACCWGGT 1 cut(s) 211
Csp6I GTAC 2 cut(s) 193, 406
CviJI RGCY 6 cut(s) 73, 78, 101, 228, 277, 287
CviKI_1 RGCY 6 cut(s) 73, 78, 101, 228, 277, 287
CviQI GTAC 2 cut(s) 193, 406
DdeI CTNAG 2 cut(s) 74, 402
DpnI GATC 1 cut(s) 22
DpnII GATC 1 cut(s) 20
DraIII CACNNNGTG 1 cut(s) 215
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco31I GGTCTC 1 cut(s) 82
EcoRII CCWGG 1 cut(s) 211
FaiI YATR 7 cut(s) 247, 256, 264, 380, 399, 410, 416
FblI GTMKAC 1 cut(s) 335
Fnu4HI GCNGC 3 cut(s) 99, 275, 285
FokI GGATG 2 cut(s) 77, 310
Fsp4HI GCNGC 3 cut(s) 99, 275, 285
FspBI CTAG 2 cut(s) 239, 365
GluI GCNGC 3 cut(s) 99, 275, 285
HaeIII GGCC 1 cut(s) 228
HapII CCGG 2 cut(s) 102, 123
HgaI GACGC 1 cut(s) 321
Hin1I GRCGYC 1 cut(s) 332
HinfI GANTC 1 cut(s) 126
HpaII CCGG 2 cut(s) 102, 123
HphI GGTGA 3 cut(s) 68, 173, 317
Hpy166II GTNNAC 1 cut(s) 336
Hpy188I TCNGA 2 cut(s) 153, 439
Hpy188III TCNNGA 1 cut(s) 12
Hpy8I GTNNAC 1 cut(s) 336
Hpy99I CGWCG 1 cut(s) 344
HpyAV CCTTC 2 cut(s) 106, 134
HpyCH4III ACNGT 2 cut(s) 223, 340
HpyCH4IV ACGT 1 cut(s) 319
HpyCH4V TGCA 3 cut(s) 26, 218, 274
HpyF10VI GCNNNNNNNGC 2 cut(s) 75, 329
HpyF3I CTNAG 2 cut(s) 74, 402
HpySE526I ACGT 1 cut(s) 319
Hsp92I GRCGYC 1 cut(s) 332
KroI GCCGGC 1 cut(s) 101
KroNI GCCGGC 1 cut(s) 103
Kzo9I GATC 1 cut(s) 20
LpnPI CCDG 7 cut(s) 55, 105, 115, 136, 198, 225, 243
Lsp1109I GCAGC 2 cut(s) 110, 286
MabI ACCWGGT 1 cut(s) 211
MaeI CTAG 2 cut(s) 239, 365
MaeII ACGT 1 cut(s) 319
MaeIII GTNAC 2 cut(s) 248, 356
MalI GATC 1 cut(s) 22
MboI GATC 1 cut(s) 20
MboII GAAGA 2 cut(s) 71, 380
MfeI CAATTG 1 cut(s) 390
MflI RGATCY 1 cut(s) 20
MluCI AATT 1 cut(s) 390
MlyI GAGTC 1 cut(s) 135
MmeI TCCRAC 2 cut(s) 131, 275
MnlI CCTC 4 cut(s) 55, 88, 308, 342
MroNI GCCGGC 1 cut(s) 101
MspI CCGG 2 cut(s) 102, 123
MspR9I CCNGG 1 cut(s) 213
MunI CAATTG 1 cut(s) 390
MvaI CCWGG 1 cut(s) 213
MwoI GCNNNNNNNGC 2 cut(s) 75, 329
NaeI GCCGGC 1 cut(s) 103
NdeII GATC 1 cut(s) 20
NgoMIV GCCGGC 1 cut(s) 101
NlaIV GGNNCC 1 cut(s) 118
NmuCI GTSAC 1 cut(s) 248
PdiI GCCGGC 1 cut(s) 103
PkrI GCNGC 3 cut(s) 100, 276, 286
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
PshAI GACNNNNGTC 1 cut(s) 255
Psp6I CCWGG 1 cut(s) 211
PspGI CCWGG 1 cut(s) 211
PspN4I GGNNCC 1 cut(s) 118
PspPI GGNCC 1 cut(s) 227
PstI CTGCAG 1 cut(s) 28
PsuI RGATCY 1 cut(s) 20
RsaI GTAC 2 cut(s) 194, 407
RsaNI GTAC 2 cut(s) 193, 406
SatI GCNGC 3 cut(s) 99, 275, 285
Sau3AI GATC 1 cut(s) 20
Sau96I GGNCC 1 cut(s) 227
SchI GAGTC 1 cut(s) 135
ScrFI CCNGG 1 cut(s) 213
SetI ASST 6 cut(s) 80, 214, 255, 322, 353, 366
SexAI ACCWGGT 1 cut(s) 211
SfcI CTRYAG 1 cut(s) 24
Sse9I AATT 1 cut(s) 390
SsiI CCGC 3 cut(s) 284, 303, 323
SspI AATATT 1 cut(s) 374
SspMI CTAG 2 cut(s) 239, 365
StyD4I CCNGG 1 cut(s) 211
TaaI ACNGT 2 cut(s) 223, 340
TaiI ACGT 1 cut(s) 322
TaqI TCGA 2 cut(s) 132, 342
TasI AATT 1 cut(s) 390
TatI WGTACW 1 cut(s) 405
TauI GCSGC 1 cut(s) 287
TseFI GTSAC 1 cut(s) 248
TseI GCWGC 2 cut(s) 98, 274
Tsp45I GTSAC 1 cut(s) 248
TspDTI ATGAA 1 cut(s) 180
XmiI GTMKAC 1 cut(s) 335
XspI CTAG 2 cut(s) 239, 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.