RLG00000022823

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000520
Physical Location & Seq
Forward (+)
12754135 .. 12754813
679 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022823

Sequence Viewer

Length: 399 bp
ATGGATGCTTCTGGAATCACAGTGAGACCAGCAGTGGGCAAGGAGAAGGAGAAGTACTCTGAAGAAGATCTAAAGGCTGCCGCCAGAGTCATCAAAAAAGAAGGATGGCAGATTTGTGGTGATGATCACCAACACATTATTAGTTGCCCGTACTTGGAGTGTGTTCCACCTGGTGCAACTGTTGGCCCTGACTATCTAGTAATATGTGACTTGTGTGGTTATGAGTTATTGCAGCCTACAGCGGCTCACTGTTGGATGTGCGGTAAGTGGGGAGTACGTGCGGTGGAGGCGTCTACTTTTGATGAGAGCTATCGTAACCACCTAGAAGAAGATTACATAGCAGAACCAATTGTGTATGCAGGCCTGGGTTTAGGGAATGAGCGCCTGGTTCCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.59

Weight (kDa)

4.75

Isoelectric Point (pI)

41.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 293
AciI CCGC 4 cut(s) 81, 242, 261, 281
AcuI CTGAAG 1 cut(s) 81
AcyI GRCGYC 1 cut(s) 290
AdeI CACNNNGTG 1 cut(s) 173
AfaI GTAC 3 cut(s) 56, 152, 276
AfiI CCNNNNNNNGG 2 cut(s) 35, 154
AjnI CCWGG 3 cut(s) 169, 363, 384
AluBI AGCT 1 cut(s) 309
AluI AGCT 1 cut(s) 309
Alw26I GTCTC 1 cut(s) 19
AoxI GGCC 2 cut(s) 184, 361
ApeKI GCWGC 2 cut(s) 77, 232
AspLEI GCGC 1 cut(s) 384
AspS9I GGNCC 1 cut(s) 185
AsuHPI GGTGA 2 cut(s) 119, 131
BarI GAAGNNNNNNTAC 2 cut(s) 38, 70
BbvI GCAGC 2 cut(s) 64, 244
BccI CCATC 1 cut(s) 99
BciT130I CCWGG 3 cut(s) 171, 365, 386
BclI TGATCA 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 19
BfaI CTAG 2 cut(s) 197, 323
BfmI CTRYAG 1 cut(s) 237
BfoI RGCGCY 1 cut(s) 385
BglII AGATCT 1 cut(s) 67
BisI GCNGC 4 cut(s) 78, 81, 233, 243
BlsI GCNGC 4 cut(s) 79, 82, 234, 244
BmcAI AGTACT 1 cut(s) 56
Bme1390I CCNGG 3 cut(s) 171, 365, 386
BmgT120I GGNCC 1 cut(s) 185
BmiI GGNNCC 1 cut(s) 390
BmrFI CCNGG 3 cut(s) 171, 365, 386
BplI GAGNNNNNCTC 2 cut(s) 41, 73
BsaAI YACGTR 1 cut(s) 278
BsaHI GRCGYC 1 cut(s) 290
BsaI GGTCTC 1 cut(s) 19
BsaJI CCNNGG 1 cut(s) 364
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 154
BseBI CCWGG 3 cut(s) 171, 365, 386
BseDI CCNNGG 1 cut(s) 364
BseGI GGATG 3 cut(s) 10, 110, 261
BseLI CCNNNNNNNGG 2 cut(s) 35, 154
BseXI GCAGC 2 cut(s) 64, 244
BshFI GGCC 2 cut(s) 186, 363
BslI CCNNNNNNNGG 2 cut(s) 35, 154
BsmAI GTCTC 1 cut(s) 19
BsnI GGCC 2 cut(s) 186, 363
Bso31I GGTCTC 1 cut(s) 19
Bsp143I GATC 2 cut(s) 67, 124
BspACI CCGC 4 cut(s) 81, 242, 261, 281
BspANI GGCC 2 cut(s) 186, 363
BspLI GGNNCC 1 cut(s) 390
BspTNI GGTCTC 1 cut(s) 19
BssECI CCNNGG 1 cut(s) 364
BssMI GATC 2 cut(s) 67, 124
BssNI GRCGYC 1 cut(s) 290
Bst2UI CCWGG 3 cut(s) 171, 365, 386
Bst4CI ACNGT 3 cut(s) 22, 181, 251
BstACI GRCGYC 1 cut(s) 290
BstBAI YACGTR 1 cut(s) 278
BstC8I GCNNGC 1 cut(s) 361
BstF5I GGATG 3 cut(s) 10, 110, 261
BstH2I RGCGCY 1 cut(s) 385
BstHHI GCGC 1 cut(s) 384
BstKTI GATC 2 cut(s) 70, 127
BstMAI GTCTC 1 cut(s) 19
BstMBI GATC 2 cut(s) 67, 124
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstNI CCWGG 3 cut(s) 171, 365, 386
BstSCI CCNGG 3 cut(s) 169, 363, 384
BstSFI CTRYAG 1 cut(s) 237
BstV1I GCAGC 2 cut(s) 64, 244
BstX2I RGATCY 1 cut(s) 67
BstYI RGATCY 1 cut(s) 67
BsuRI GGCC 2 cut(s) 186, 363
BtsCI GGATG 3 cut(s) 10, 110, 261
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 3 cut(s) 27, 39, 247
Cac8I GCNNGC 1 cut(s) 361
CfoI GCGC 1 cut(s) 384
Cfr13I GGNCC 1 cut(s) 185
CseI GACGC 1 cut(s) 279
CsiI ACCWGGT 1 cut(s) 169
Csp6I GTAC 3 cut(s) 55, 151, 275
CviJI RGCY 6 cut(s) 77, 186, 235, 245, 309, 363
CviKI_1 RGCY 6 cut(s) 77, 186, 235, 245, 309, 363
CviQI GTAC 3 cut(s) 55, 151, 275
DpnI GATC 2 cut(s) 69, 126
DpnII GATC 2 cut(s) 67, 124
DraIII CACNNNGTG 1 cut(s) 173
Eco147I AGGCCT 1 cut(s) 363
Eco31I GGTCTC 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 81
EcoRII CCWGG 3 cut(s) 169, 363, 384
FaiI YATR 4 cut(s) 205, 222, 338, 357
FbaI TGATCA 1 cut(s) 124
FblI GTMKAC 1 cut(s) 293
Fnu4HI GCNGC 4 cut(s) 78, 81, 233, 243
FokI GGATG 3 cut(s) 17, 117, 268
Fsp4HI GCNGC 4 cut(s) 78, 81, 233, 243
FspBI CTAG 2 cut(s) 197, 323
GlaI GCGC 1 cut(s) 383
GluI GCNGC 4 cut(s) 78, 81, 233, 243
HaeII RGCGCY 1 cut(s) 385
HaeIII GGCC 2 cut(s) 186, 363
HgaI GACGC 1 cut(s) 279
HhaI GCGC 1 cut(s) 384
Hin1I GRCGYC 1 cut(s) 290
Hin6I GCGC 1 cut(s) 382
HinP1I GCGC 1 cut(s) 382
HinfI GANTC 2 cut(s) 15, 87
HphI GGTGA 2 cut(s) 119, 131
Hpy166II GTNNAC 1 cut(s) 294
Hpy188I TCNGA 1 cut(s) 61
Hpy188III TCNNGA 2 cut(s) 12, 392
Hpy8I GTNNAC 1 cut(s) 294
HpyAV CCTTC 2 cut(s) 40, 95
HpyCH4III ACNGT 3 cut(s) 22, 181, 251
HpyCH4IV ACGT 1 cut(s) 277
HpyCH4V TGCA 3 cut(s) 176, 232, 359
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
HpySE526I ACGT 1 cut(s) 277
Hsp92I GRCGYC 1 cut(s) 290
HspAI GCGC 1 cut(s) 382
Ksp22I TGATCA 1 cut(s) 124
Kzo9I GATC 2 cut(s) 67, 124
LpnPI CCDG 9 cut(s) 42, 97, 156, 183, 201, 345, 350, 371, 377
Lsp1109I GCAGC 2 cut(s) 64, 244
MabI ACCWGGT 1 cut(s) 169
MaeI CTAG 2 cut(s) 197, 323
MaeII ACGT 1 cut(s) 277
MaeIII GTNAC 2 cut(s) 206, 314
MalI GATC 2 cut(s) 69, 126
MboI GATC 2 cut(s) 67, 124
MboII GAAGA 4 cut(s) 74, 77, 338, 341
MfeI CAATTG 1 cut(s) 348
MflI RGATCY 1 cut(s) 67
MluCI AATT 1 cut(s) 348
MlyI GAGTC 1 cut(s) 96
MmeI TCCRAC 1 cut(s) 233
MnlI CCTC 1 cut(s) 280
MspA1I CMGCKG 1 cut(s) 242
MspR9I CCNGG 3 cut(s) 171, 365, 386
MunI CAATTG 1 cut(s) 348
MvaI CCWGG 3 cut(s) 171, 365, 386
MwoI GCNNNNNNNGC 1 cut(s) 287
NdeII GATC 2 cut(s) 67, 124
NlaIV GGNNCC 1 cut(s) 390
NmuCI GTSAC 1 cut(s) 206
PceI AGGCCT 1 cut(s) 363
PfeI GAWTC 1 cut(s) 15
PkrI GCNGC 4 cut(s) 79, 82, 234, 244
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
Ppu21I YACGTR 1 cut(s) 278
Psp6I CCWGG 3 cut(s) 169, 363, 384
PspGI CCWGG 3 cut(s) 169, 363, 384
PspN4I GGNNCC 1 cut(s) 390
PspPI GGNCC 1 cut(s) 185
PsuI RGATCY 1 cut(s) 67
RsaI GTAC 3 cut(s) 56, 152, 276
RsaNI GTAC 3 cut(s) 55, 151, 275
SatI GCNGC 4 cut(s) 78, 81, 233, 243
Sau3AI GATC 2 cut(s) 67, 124
Sau96I GGNCC 1 cut(s) 185
ScaI AGTACT 1 cut(s) 56
SchI GAGTC 1 cut(s) 96
ScrFI CCNGG 3 cut(s) 171, 365, 386
SetI ASST 4 cut(s) 172, 280, 311, 324
SexAI ACCWGGT 1 cut(s) 169
SfcI CTRYAG 1 cut(s) 237
Sse9I AATT 1 cut(s) 348
SseBI AGGCCT 1 cut(s) 363
SsiI CCGC 4 cut(s) 81, 242, 261, 281
SspMI CTAG 2 cut(s) 197, 323
StuI AGGCCT 1 cut(s) 363
StyD4I CCNGG 3 cut(s) 169, 363, 384
TaaI ACNGT 3 cut(s) 22, 181, 251
TaiI ACGT 1 cut(s) 280
TasI AATT 1 cut(s) 348
TatI WGTACW 1 cut(s) 54
TauI GCSGC 2 cut(s) 83, 245
TfiI GAWTC 1 cut(s) 15
TscAI CASTG 3 cut(s) 27, 39, 254
TseFI GTSAC 1 cut(s) 206
TseI GCWGC 2 cut(s) 77, 232
Tsp45I GTSAC 1 cut(s) 206
TspRI CASTG 3 cut(s) 27, 39, 254
XmiI GTMKAC 1 cut(s) 293
XspI CTAG 2 cut(s) 197, 323
ZrmI AGTACT 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.