Rh7DG314600

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000520
Physical Location & Seq
Reverse (-)
36899918 .. 36901374
1457 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG314600.1

Sequence Viewer

Length: 699 bp
ATGTCTCTGATGATAGAGAAACCAGCCGGCAAGGAGGTGGGCTGCGACCCGGCGCAACTGGCGAAACGCGGATGGCTCAAGGGCGACGACCTCAGAGAGCCGACCTGCATACGTATGTTGCCAATGAAAAACAAGGACGACGACGAGATCTGGGTTCCGGCACAGTACTGTAACAAGCCTGAAGAACCTCCTAGTGATGAAGAGCTAAAACGCCTGTCTCACCTTTTGGCAGAAGAACCACACAAGCTCACAAAGGACGAATCAACCATCCTATGTCGCTTTCTCCCTACCCCGAAGTTTGATGAACTCTTCTTTAAACGGGCAAGGGAGAAGAAAGCCAGCAAATCCAAAGAACCAAAGGCTTCTATTCCGTTTGTCTATGAAGGAGGTGGAGATAGTCTGCACAATTGCAGGATTTGTGGCAAGAAGGACCACTTTGATGTAGATTGCTCTTACATGAACTTTGTCCCTCAGGGTGTAAATGTTGGCCCCGAGTATATGGTGGTGTGTCGGATATGTGGTCATAGGGTTAGCCAGCCTGTTGGAGATTGTCAGGCATGTGGTACGGAGGGAGGACGTGCTGTTATGAAGGTGTGTATTTTTTGTTTATGCCTTGGTGACCACTTGCCTGAGGACTGCCCACGCACAAAGAGACAGAAGACTCGATCCAAATCAGAAGATGCATTGATCATAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

26.13

Weight (kDa)

7.45

Isoelectric Point (pI)

58.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 113
AccII CGCG 1 cut(s) 69
AciI CCGC 1 cut(s) 69
AclWI GGATC 1 cut(s) 660
AcuI CTGAAG 1 cut(s) 201
AfaI GTAC 2 cut(s) 167, 565
AjiI CACGTC 1 cut(s) 578
AluBI AGCT 3 cut(s) 205, 247, 696
AluI AGCT 3 cut(s) 205, 247, 696
Alw26I GTCTC 3 cut(s) 9, 222, 646
AlwI GGATC 1 cut(s) 660
Ama87I CYCGRG 1 cut(s) 491
AoxI GGCC 1 cut(s) 487
ApeKI GCWGC 1 cut(s) 42
AspLEI GCGC 1 cut(s) 55
AspS9I GGNCC 2 cut(s) 430, 488
AsuC2I CCSGG 1 cut(s) 50
AsuHPI GGTGA 2 cut(s) 212, 629
AvaI CYCGRG 1 cut(s) 491
AvaII GGWCC 1 cut(s) 430
AxyI CCTNAGG 2 cut(s) 471, 630
BbsI GAAGAC 1 cut(s) 665
BbvI GCAGC 1 cut(s) 29
BccI CCATC 2 cut(s) 66, 275
BclI TGATCA 1 cut(s) 687
BcnI CCSGG 1 cut(s) 50
BcoDI GTCTC 3 cut(s) 9, 222, 646
BfaI CTAG 1 cut(s) 192
BfuAI ACCTGC 1 cut(s) 113
BglII AGATCT 1 cut(s) 147
BisI GCNGC 1 cut(s) 43
BlsI GCNGC 1 cut(s) 44
BmcAI AGTACT 1 cut(s) 167
Bme1390I CCNGG 1 cut(s) 50
Bme18I GGWCC 1 cut(s) 430
BmeT110I CYCGRG 1 cut(s) 491
BmgBI CACGTC 1 cut(s) 578
BmgT120I GGNCC 2 cut(s) 430, 488
BmiI GGNNCC 2 cut(s) 156, 490
BmrFI CCNGG 1 cut(s) 50
BmsI GCATC 1 cut(s) 670
BpiI GAAGAC 1 cut(s) 665
BpuEI CTTGAG 1 cut(s) 62
BpuMI CCSGG 1 cut(s) 50
BsaAI YACGTR 1 cut(s) 113
BsaBI GATNNNNATC 1 cut(s) 670
BsaJI CCNNGG 1 cut(s) 613
Bse118I RCCGGY 1 cut(s) 26
Bse1I ACTGG 1 cut(s) 63
Bse21I CCTNAGG 2 cut(s) 471, 630
Bse8I GATNNNNATC 1 cut(s) 670
BseDI CCNNGG 1 cut(s) 613
BseGI GGATG 2 cut(s) 77, 267
BseJI GATNNNNATC 1 cut(s) 670
BseMII CTCAG 3 cut(s) 106, 485, 621
BseNI ACTGG 1 cut(s) 63
BseXI GCAGC 1 cut(s) 29
BsgI GTGCAG 1 cut(s) 386
Bsh1236I CGCG 1 cut(s) 69
BshFI GGCC 1 cut(s) 489
BsiHKCI CYCGRG 1 cut(s) 491
BsiSI CCGG 3 cut(s) 27, 50, 158
BslFI GGGAC 1 cut(s) 452
BsmAI GTCTC 3 cut(s) 9, 222, 646
BsmFI GGGAC 1 cut(s) 452
BsnI GGCC 1 cut(s) 489
BsoBI CYCGRG 1 cut(s) 491
Bsp143I GATC 3 cut(s) 147, 665, 687
BspACI CCGC 1 cut(s) 69
BspANI GGCC 1 cut(s) 489
BspCNI CTCAG 3 cut(s) 105, 484, 622
BspFNI CGCG 1 cut(s) 69
BspLI GGNNCC 2 cut(s) 156, 490
BspMI ACCTGC 1 cut(s) 113
BspPI GGATC 1 cut(s) 660
BspQI GCTCTTC 1 cut(s) 195
BsrFI RCCGGY 1 cut(s) 26
BsrI ACTGG 1 cut(s) 63
BssAI RCCGGY 1 cut(s) 26
BssECI CCNNGG 1 cut(s) 613
BssMI GATC 3 cut(s) 147, 665, 687
BssT1I CCWWGG 1 cut(s) 613
Bst4CI ACNGT 2 cut(s) 165, 170
Bst6I CTCTTC 2 cut(s) 195, 314
BstBAI YACGTR 1 cut(s) 113
BstC8I GCNNGC 3 cut(s) 28, 340, 536
BstDEI CTNAG 3 cut(s) 92, 471, 630
BstEII GGTNACC 1 cut(s) 617
BstF5I GGATG 2 cut(s) 77, 267
BstFNI CGCG 1 cut(s) 69
BstHHI GCGC 1 cut(s) 55
BstKTI GATC 3 cut(s) 150, 668, 690
BstMAI GTCTC 3 cut(s) 9, 222, 646
BstMBI GATC 3 cut(s) 147, 665, 687
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstNSI RCATGY 1 cut(s) 561
BstPI GGTNACC 1 cut(s) 617
BstSCI CCNGG 1 cut(s) 48
BstSNI TACGTA 1 cut(s) 113
BstUI CGCG 1 cut(s) 69
BstV1I GCAGC 1 cut(s) 29
BstV2I GAAGAC 1 cut(s) 665
BstX2I RGATCY 1 cut(s) 147
BstXI CCANNNNNNTGG 1 cut(s) 542
BstYI RGATCY 1 cut(s) 147
Bsu36I CCTNAGG 2 cut(s) 471, 630
BsuRI GGCC 1 cut(s) 489
BtrI CACGTC 1 cut(s) 578
BtsCI GGATG 2 cut(s) 77, 267
BveI ACCTGC 1 cut(s) 113
Cac8I GCNNGC 3 cut(s) 28, 340, 536
CfoI GCGC 1 cut(s) 55
Cfr10I RCCGGY 1 cut(s) 26
Cfr13I GGNCC 2 cut(s) 430, 488
Csp6I GTAC 2 cut(s) 166, 564
CviAII CATG 2 cut(s) 457, 558
CviQI GTAC 2 cut(s) 166, 564
DdeI CTNAG 3 cut(s) 92, 471, 630
DpnI GATC 3 cut(s) 149, 667, 689
DpnII GATC 3 cut(s) 147, 665, 687
DraI TTTAAA 1 cut(s) 316
Eam1104I CTCTTC 2 cut(s) 195, 314
EarI CTCTTC 2 cut(s) 195, 314
Eco105I TACGTA 1 cut(s) 113
Eco130I CCWWGG 1 cut(s) 613
Eco47I GGWCC 1 cut(s) 430
Eco57I CTGAAG 1 cut(s) 201
Eco81I CCTNAGG 2 cut(s) 471, 630
Eco88I CYCGRG 1 cut(s) 491
Eco91I GGTNACC 1 cut(s) 617
EcoO65I GGTNACC 1 cut(s) 617
EcoT14I CCWWGG 1 cut(s) 613
EcoT22I ATGCAT 1 cut(s) 685
ErhI CCWWGG 1 cut(s) 613
FaeI CATG 2 cut(s) 460, 561
FalI AAGNNNNNCTT 2 cut(s) 419, 451
FaqI GGGAC 1 cut(s) 452
FatI CATG 2 cut(s) 456, 557
FbaI TGATCA 1 cut(s) 687
Fnu4HI GCNGC 1 cut(s) 43
FokI GGATG 2 cut(s) 84, 254
Fsp4HI GCNGC 1 cut(s) 43
FspBI CTAG 1 cut(s) 192
GlaI GCGC 1 cut(s) 54
GluI GCNGC 1 cut(s) 43
HaeIII GGCC 1 cut(s) 489
HapII CCGG 3 cut(s) 27, 50, 158
HhaI GCGC 1 cut(s) 55
Hin1II CATG 2 cut(s) 460, 561
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HinfI GANTC 2 cut(s) 260, 661
HpaII CCGG 3 cut(s) 27, 50, 158
HphI GGTGA 2 cut(s) 212, 629
Hpy188I TCNGA 4 cut(s) 9, 95, 513, 676
Hpy99I CGWCG 3 cut(s) 89, 143, 146
HpyAV CCTTC 3 cut(s) 377, 421, 583
HpyCH4III ACNGT 2 cut(s) 165, 170
HpyCH4IV ACGT 2 cut(s) 112, 577
HpyCH4V TGCA 4 cut(s) 108, 403, 411, 683
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpyF3I CTNAG 3 cut(s) 92, 471, 630
HpySE526I ACGT 2 cut(s) 112, 577
Hsp92II CATG 2 cut(s) 460, 561
HspAI GCGC 1 cut(s) 53
KroI GCCGGC 1 cut(s) 26
KroNI GCCGGC 1 cut(s) 28
Ksp22I TGATCA 1 cut(s) 687
Kzo9I GATC 3 cut(s) 147, 665, 687
LguI GCTCTTC 1 cut(s) 195
Lsp1109I GCAGC 1 cut(s) 29
LweI GCATC 1 cut(s) 670
MaeI CTAG 1 cut(s) 192
MaeII ACGT 2 cut(s) 112, 577
MaeIII GTNAC 2 cut(s) 170, 617
MalI GATC 3 cut(s) 149, 667, 689
MboI GATC 3 cut(s) 147, 665, 687
MboII GAAGA 7 cut(s) 194, 212, 245, 301, 343, 670, 689
MfeI CAATTG 1 cut(s) 406
MflI RGATCY 1 cut(s) 147
MluCI AATT 1 cut(s) 406
MlyI GAGTC 1 cut(s) 655
MmeI TCCRAC 2 cut(s) 491, 523
MnlI CCTC 8 cut(s) 28, 101, 198, 380, 480, 562, 566, 625
Mph1103I ATGCAT 1 cut(s) 685
MroNI GCCGGC 1 cut(s) 26
MseI TTAA 1 cut(s) 315
MslI CAYNNNNRTG 2 cut(s) 113, 438
MspI CCGG 3 cut(s) 27, 50, 158
MspR9I CCNGG 1 cut(s) 50
MunI CAATTG 1 cut(s) 406
MvnI CGCG 1 cut(s) 69
MwoI GCNNNNNNNGC 1 cut(s) 59
NaeI GCCGGC 1 cut(s) 28
NciI CCSGG 1 cut(s) 50
NdeII GATC 3 cut(s) 147, 665, 687
NgoMIV GCCGGC 1 cut(s) 26
NlaIII CATG 2 cut(s) 460, 561
NlaIV GGNNCC 2 cut(s) 156, 490
NmuCI GTSAC 1 cut(s) 617
NsiI ATGCAT 1 cut(s) 685
NspI RCATGY 1 cut(s) 561
PciSI GCTCTTC 1 cut(s) 195
PdiI GCCGGC 1 cut(s) 28
PfeI GAWTC 1 cut(s) 260
PkrI GCNGC 1 cut(s) 44
PleI GAGTC 1 cut(s) 655
PpsI GAGTC 1 cut(s) 655
Ppu21I YACGTR 1 cut(s) 113
PspEI GGTNACC 1 cut(s) 617
PspN4I GGNNCC 2 cut(s) 156, 490
PspPI GGNCC 2 cut(s) 430, 488
PsuI RGATCY 1 cut(s) 147
RsaI GTAC 2 cut(s) 167, 565
RsaNI GTAC 2 cut(s) 166, 564
RseI CAYNNNNRTG 2 cut(s) 113, 438
SapI GCTCTTC 1 cut(s) 195
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 1 cut(s) 43
Sau3AI GATC 3 cut(s) 147, 665, 687
Sau96I GGNCC 2 cut(s) 430, 488
ScaI AGTACT 1 cut(s) 167
SchI GAGTC 1 cut(s) 655
ScrFI CCNGG 1 cut(s) 50
SfaNI GCATC 1 cut(s) 670
SinI GGWCC 1 cut(s) 430
SmiMI CAYNNNNRTG 2 cut(s) 113, 438
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
SnaBI TACGTA 1 cut(s) 113
Sse9I AATT 1 cut(s) 406
SsiI CCGC 1 cut(s) 69
SspMI CTAG 1 cut(s) 192
StyD4I CCNGG 1 cut(s) 48
StyI CCWWGG 1 cut(s) 613
TaaI ACNGT 2 cut(s) 165, 170
TaiI ACGT 2 cut(s) 115, 580
TaqI TCGA 1 cut(s) 664
TasI AATT 1 cut(s) 406
TatI WGTACW 1 cut(s) 165
TfiI GAWTC 1 cut(s) 260
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TseFI GTSAC 1 cut(s) 617
TseI GCWGC 1 cut(s) 42
Tsp45I GTSAC 1 cut(s) 617
TspDTI ATGAA 6 cut(s) 140, 213, 318, 396, 473, 602
TspGWI ACGGA 2 cut(s) 360, 581
VpaK11BI GGWCC 1 cut(s) 430
XceI RCATGY 1 cut(s) 561
XspI CTAG 1 cut(s) 192
ZrmI AGTACT 1 cut(s) 167
Zsp2I ATGCAT 1 cut(s) 685
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.