FvH4_4g09240

pfkB family carbohydrate kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000347
Physical Location & Seq
Forward (+)
10728902 .. 10731474
2573 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g09240.t1

Sequence Viewer

Length: 438 bp
ATGGCCGACTTCTCCAACGTCGATATCTCACGGGCGGAGGTGAGCATAGCAACTTCCGGCAACACCCCGACCTCTGAGGACCTCCAACTGCTTCGGATTCCTAATTCGACCTCTGCTCGCTTCGAATTCGACGATCCCGGACCGTTCGCTCTCAACTTTGGCAAATTTTGCCTCAATTTCAGTATTGTGAGGTTGGGGCTTTACTGCAATGCTATTGACCATGTGGATGATGAAGTGAATAGGCAGTTCTTAGTGGATGTTCTTCGTGACAAAGGAGGGAATCGCTGCCTTGGAGAGTCCGTTGAAGTTGACAGACGTGCACAGGAATTCTCCCGATTTAATCCGGATTTTCAAGGCTTGGATATTCTTGAAATTCTGCCGAATTTAGATCTTCTTCTCCATATTGGACTTGGTTTGGACCTCTCCTTCATGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PfkB

Protein Analysis

146

Amino Acids

16.21

Weight (kDa)

4.38

Isoelectric Point (pI)

28.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 343
AciI CCGC 1 cut(s) 35
AclWI GGATC 1 cut(s) 128
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 5 cut(s) 125, 164, 326, 372, 382
AgsI TTSAA 3 cut(s) 305, 353, 371
AjiI CACGTC 1 cut(s) 317
Alw21I GWGCWC 1 cut(s) 322
Alw44I GTGCAC 1 cut(s) 318
AlwI GGATC 1 cut(s) 128
Aor13HI TCCGGA 1 cut(s) 343
AoxI GGCC 1 cut(s) 3
ApaLI GTGCAC 1 cut(s) 318
ApeKI GCWGC 1 cut(s) 285
ApoI RAATTY 5 cut(s) 125, 164, 326, 372, 382
AspS9I GGNCC 3 cut(s) 79, 140, 418
AsuC2I CCSGG 1 cut(s) 138
AsuHPI GGTGA 1 cut(s) 52
AsuII TTCGAA 1 cut(s) 123
AvaII GGWCC 3 cut(s) 79, 140, 418
BaeGI GKGCMC 1 cut(s) 322
Bbv12I GWGCWC 1 cut(s) 322
BbvI GCAGC 1 cut(s) 272
BcnI CCSGG 1 cut(s) 138
BfaI CTAG 1 cut(s) 436
BglII AGATCT 1 cut(s) 388
BisI GCNGC 1 cut(s) 286
BlsI GCNGC 1 cut(s) 287
Bme1390I CCNGG 1 cut(s) 138
Bme18I GGWCC 3 cut(s) 79, 140, 418
BmgBI CACGTC 1 cut(s) 317
BmgT120I GGNCC 3 cut(s) 79, 140, 418
BmrFI CCNGG 1 cut(s) 138
Bpu14I TTCGAA 1 cut(s) 123
BpuMI CCSGG 1 cut(s) 138
BsaJI CCNNGG 1 cut(s) 289
BsaWI WCCGGW 1 cut(s) 343
BsaXI ACNNNNNCTCC 2 cut(s) 285, 315
Bse3DI GCAATG 1 cut(s) 214
BseAI TCCGGA 1 cut(s) 343
BseDI CCNNGG 1 cut(s) 289
BseGI GGATG 2 cut(s) 232, 262
BseMI GCAATG 1 cut(s) 214
BseMII CTCAG 1 cut(s) 66
BseSI GKGCMC 1 cut(s) 322
BseXI GCAGC 1 cut(s) 272
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 322
BsiSI CCGG 3 cut(s) 57, 138, 344
BsnI GGCC 1 cut(s) 5
Bsp119I TTCGAA 1 cut(s) 123
Bsp1286I GDGCHC 1 cut(s) 322
Bsp13I TCCGGA 1 cut(s) 343
Bsp143I GATC 2 cut(s) 133, 388
BspACI CCGC 1 cut(s) 35
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 67
BspEI TCCGGA 1 cut(s) 343
BspPI GGATC 1 cut(s) 128
BspT104I TTCGAA 1 cut(s) 123
BsrDI GCAATG 1 cut(s) 214
BssECI CCNNGG 1 cut(s) 289
BssMI GATC 2 cut(s) 133, 388
BssT1I CCWWGG 1 cut(s) 289
Bst4CI ACNGT 1 cut(s) 144
BstAPI GCANNNNNTGC 1 cut(s) 168
BstBI TTCGAA 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 118
BstDEI CTNAG 2 cut(s) 75, 250
BstF5I GGATG 2 cut(s) 232, 262
BstKTI GATC 2 cut(s) 136, 391
BstMBI GATC 2 cut(s) 133, 388
BstMWI GCNNNNNNNGC 1 cut(s) 168
BstSCI CCNGG 1 cut(s) 136
BstSLI GKGCMC 1 cut(s) 322
BstV1I GCAGC 1 cut(s) 272
BstX2I RGATCY 1 cut(s) 388
BstYI RGATCY 1 cut(s) 388
BsuRI GGCC 1 cut(s) 5
BtrI CACGTC 1 cut(s) 317
BtsCI GGATG 2 cut(s) 232, 262
Cac8I GCNNGC 1 cut(s) 118
Cfr13I GGNCC 3 cut(s) 79, 140, 418
CpoI CGGWCCG 1 cut(s) 140
CspI CGGWCCG 1 cut(s) 140
CviAII CATG 2 cut(s) 221, 430
CviJI RGCY 3 cut(s) 5, 199, 357
CviKI_1 RGCY 3 cut(s) 5, 199, 357
DdeI CTNAG 2 cut(s) 75, 250
DpnI GATC 2 cut(s) 135, 390
DpnII GATC 2 cut(s) 133, 388
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 50
Eco130I CCWWGG 1 cut(s) 289
Eco32I GATATC 1 cut(s) 25
Eco47I GGWCC 3 cut(s) 79, 140, 418
EcoO109I RGGNCCY 1 cut(s) 79
EcoRI GAATTC 2 cut(s) 125, 326
EcoRV GATATC 1 cut(s) 25
EcoT14I CCWWGG 1 cut(s) 289
ErhI CCWWGG 1 cut(s) 289
FaeI CATG 2 cut(s) 224, 433
FaiI YATR 4 cut(s) 47, 222, 402, 431
FatI CATG 2 cut(s) 220, 429
Fnu4HI GCNGC 1 cut(s) 286
FokI GGATG 2 cut(s) 239, 269
Fsp4HI GCNGC 1 cut(s) 286
FspBI CTAG 1 cut(s) 436
GluI GCNGC 1 cut(s) 286
HaeIII GGCC 1 cut(s) 5
HapII CCGG 3 cut(s) 57, 138, 344
Hin1II CATG 2 cut(s) 224, 433
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HinfI GANTC 3 cut(s) 97, 280, 296
HpaII CCGG 3 cut(s) 57, 138, 344
HphI GGTGA 1 cut(s) 52
Hpy166II GTNNAC 2 cut(s) 310, 320
Hpy188I TCNGA 2 cut(s) 76, 96
Hpy188III TCNNGA 4 cut(s) 266, 333, 344, 368
Hpy8I GTNNAC 2 cut(s) 310, 320
Hpy99I CGWCG 2 cut(s) 23, 134
HpyAV CCTTC 1 cut(s) 436
HpyCH4III ACNGT 1 cut(s) 144
HpyCH4IV ACGT 2 cut(s) 18, 316
HpyCH4V TGCA 2 cut(s) 207, 320
HpyF10VI GCNNNNNNNGC 1 cut(s) 168
HpyF3I CTNAG 2 cut(s) 75, 250
HpySE526I ACGT 2 cut(s) 18, 316
Hsp92II CATG 2 cut(s) 224, 433
Kpn2I TCCGGA 1 cut(s) 343
Kzo9I GATC 2 cut(s) 133, 388
LpnPI CCDG 4 cut(s) 70, 151, 308, 357
Lsp1109I GCAGC 1 cut(s) 272
MaeI CTAG 1 cut(s) 436
MaeII ACGT 2 cut(s) 18, 316
MaeIII GTNAC 1 cut(s) 266
MalI GATC 2 cut(s) 135, 390
MboI GATC 2 cut(s) 133, 388
MboII GAAGA 3 cut(s) 254, 383, 386
MflI RGATCY 1 cut(s) 388
MhlI GDGCHC 1 cut(s) 322
MluCI AATT 7 cut(s) 103, 125, 164, 175, 326, 372, 382
MlyI GAGTC 1 cut(s) 305
MmeI TCCRAC 2 cut(s) 39, 109
MnlI CCTC 9 cut(s) 31, 70, 82, 92, 121, 182, 183, 269, 431
MroI TCCGGA 1 cut(s) 343
MseI TTAA 1 cut(s) 339
MslI CAYNNNNRTG 1 cut(s) 225
MspI CCGG 3 cut(s) 57, 138, 344
MspR9I CCNGG 1 cut(s) 138
MwoI GCNNNNNNNGC 1 cut(s) 168
NciI CCSGG 1 cut(s) 138
NdeII GATC 2 cut(s) 133, 388
NlaIII CATG 2 cut(s) 224, 433
NmuCI GTSAC 1 cut(s) 266
NspV TTCGAA 1 cut(s) 123
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PfeI GAWTC 2 cut(s) 97, 280
PfoI TCCNGGA 1 cut(s) 136
PkrI GCNGC 1 cut(s) 287
PleI GAGTC 1 cut(s) 304
PpsI GAGTC 1 cut(s) 304
PpuMI RGGWCCY 1 cut(s) 79
Psp5II RGGWCCY 1 cut(s) 79
PspPI GGNCC 3 cut(s) 79, 140, 418
PspPPI RGGWCCY 1 cut(s) 79
PsuI RGATCY 1 cut(s) 388
RseI CAYNNNNRTG 1 cut(s) 225
Rsr2I CGGWCCG 1 cut(s) 140
RsrII CGGWCCG 1 cut(s) 140
SaqAI TTAA 1 cut(s) 339
SatI GCNGC 1 cut(s) 286
Sau3AI GATC 2 cut(s) 133, 388
Sau96I GGNCC 3 cut(s) 79, 140, 418
SchI GAGTC 1 cut(s) 305
ScrFI CCNGG 1 cut(s) 138
SduI GDGCHC 1 cut(s) 322
SetI ASST 8 cut(s) 21, 42, 74, 84, 113, 194, 319, 423
SfuI TTCGAA 1 cut(s) 123
SinI GGWCC 3 cut(s) 79, 140, 418
SmiMI CAYNNNNRTG 1 cut(s) 225
Sse9I AATT 7 cut(s) 103, 125, 164, 175, 326, 372, 382
SsiI CCGC 1 cut(s) 35
SspMI CTAG 1 cut(s) 436
StyD4I CCNGG 1 cut(s) 136
StyI CCWWGG 1 cut(s) 289
TaaI ACNGT 1 cut(s) 144
TaiI ACGT 2 cut(s) 21, 319
TaqI TCGA 4 cut(s) 21, 107, 123, 129
TasI AATT 7 cut(s) 103, 125, 164, 175, 326, 372, 382
TfiI GAWTC 2 cut(s) 97, 280
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TseFI GTSAC 1 cut(s) 266
TseI GCWGC 1 cut(s) 285
Tsp45I GTSAC 1 cut(s) 266
TspDTI ATGAA 2 cut(s) 246, 418
TspGWI ACGGA 1 cut(s) 289
VneI GTGCAC 1 cut(s) 318
VpaK11BI GGWCC 3 cut(s) 79, 140, 418
XapI RAATTY 5 cut(s) 125, 164, 326, 372, 382
XcmI CCANNNNNNNNNTGG 1 cut(s) 407
XspI CTAG 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.