RLG00000028246

DNA polymerase processivity factor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000347
Physical Location & Seq
Reverse (-)
20533393 .. 20537520
4128 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028246

Sequence Viewer

Length: 759 bp
ATGTCACGGTGGTTTGAGCTCAAGCTTGATTTTTCTGAAGCTATTCTGCTCAAGAAAGCCGTAAGAGTCTTCACTCAGGTAGCCTATTCAGACCGAGAGCTCCCCACTTCCATGTTCAACAATGTCATCCCCAACAACGCCGACCTCCACTTATCTCCGACGATGGTCCTCCTGGTCTCTACAAACTCGCATTTTCGGTTTCCGGAAATGGCCACTGTGCTGGCGATGAAGCCGCCCCCGTGCTCCTCCGTGTCGAGATTGTGGTGCTCCAAGAGCCGCCGCACGCTCTGTGTTTCTCTGCACAGGTTGAAATGCCTACTGGAACGCAACACTGAGGATTCGGTTACTCTTTATGGTGATGAGGGAGCTGTTGATAGGATTTTCTATGAGATTGGGGATGATGATGGCATCAAATACTCCTCTACGCTGCCAGTGATTTCAATGCGGGATCAGATTCAGATGGACCCAGGGTTTGTAGGACATGAATATCCAATGAGGCTTGGCTTGTCTTCAGAGATTTTTTGTGCCTTTATCACTCAATCGGATTCTCATGGGTTTAAAGTTCATGCCAGAGTGTCACAAACCCAAGTTGTGCTCCGGGTAGTGAATAACGAGATGGTCTTCAGACCAGAGGCCGGGGTTTGCGAGATTGAGAGTGATGGAGGTAGATATCCATTTGTGTTGAAGTTTGATCTCCAGCACAAGAGAGCGTTTCTCAATGCTGCTATGCTGTCAGAGATGAGAAAACCCCATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03410 ko03420 ko03430 ko04110 ko04530 ko05161 ko05166 map03030 map03410 map03420 map03430 map04110 map04530 map05161 map05166
Pfam Domains
Protein Families
PCNA_C PCNA_N Vezatin

Protein Analysis

253

Amino Acids

28.7

Weight (kDa)

7.08

Isoelectric Point (pI)

40.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 202
AciI CCGC 4 cut(s) 233, 277, 280, 445
AclWI GGATC 1 cut(s) 456
AcoI YGGCCR 1 cut(s) 210
AcuI CTGAAG 3 cut(s) 57, 495, 607
AfiI CCNNNNNNNGG 1 cut(s) 635
AgsI TTSAA 4 cut(s) 118, 310, 441, 685
AjnI CCWGG 2 cut(s) 171, 466
AluBI AGCT 5 cut(s) 19, 25, 41, 100, 368
AluI AGCT 5 cut(s) 19, 25, 41, 100, 368
Alw21I GWGCWC 5 cut(s) 21, 102, 245, 269, 597
Alw26I GTCTC 1 cut(s) 181
AlwI GGATC 1 cut(s) 456
Aor13HI TCCGGA 1 cut(s) 202
AoxI GGCC 2 cut(s) 210, 633
ApeKI GCWGC 2 cut(s) 427, 722
ArsI GACNNNNNNTTYG 2 cut(s) 455, 487
Asp700I GAANNNNTTC 1 cut(s) 42
AspS9I GGNCC 2 cut(s) 166, 463
AsuC2I CCSGG 2 cut(s) 599, 637
AsuHPI GGTGA 1 cut(s) 368
AvaII GGWCC 2 cut(s) 166, 463
BalI TGGCCA 1 cut(s) 212
BanII GRGCYC 2 cut(s) 21, 102
BbsI GAAGAC 3 cut(s) 61, 501, 613
Bbv12I GWGCWC 5 cut(s) 21, 102, 245, 269, 597
BbvI GCAGC 2 cut(s) 414, 709
BccI CCATC 5 cut(s) 157, 398, 454, 610, 653
BceAI ACGGC 1 cut(s) 44
BciT130I CCWGG 2 cut(s) 173, 468
BcnI CCSGG 2 cut(s) 599, 637
BcoDI GTCTC 1 cut(s) 181
BisI GCNGC 5 cut(s) 233, 277, 280, 428, 723
BlsI GCNGC 5 cut(s) 234, 278, 281, 429, 724
Bme1390I CCNGG 4 cut(s) 173, 468, 599, 637
Bme18I GGWCC 2 cut(s) 166, 463
BmgT120I GGNCC 2 cut(s) 166, 463
BmiI GGNNCC 1 cut(s) 465
BmrFI CCNGG 4 cut(s) 173, 468, 599, 637
BmsI GCATC 1 cut(s) 417
BoxI GACNNNNGTC 1 cut(s) 164
BpiI GAAGAC 3 cut(s) 61, 501, 613
BplI GAGNNNNNCTC 2 cut(s) 699, 731
BpmI CTGGAG 1 cut(s) 680
BpuEI CTTGAG 2 cut(s) 5, 35
BpuMI CCSGG 2 cut(s) 599, 637
BsaI GGTCTC 1 cut(s) 181
BsaJI CCNNGG 3 cut(s) 466, 467, 636
BsaWI WCCGGW 1 cut(s) 202
Bsc4I CCNNNNNNNGG 1 cut(s) 635
Bse1I ACTGG 2 cut(s) 324, 431
BseAI TCCGGA 1 cut(s) 202
BseBI CCWGG 2 cut(s) 173, 468
BseDI CCNNGG 3 cut(s) 466, 467, 636
BseGI GGATG 2 cut(s) 126, 403
BseLI CCNNNNNNNGG 1 cut(s) 635
BseMII CTCAG 2 cut(s) 89, 324
BseNI ACTGG 2 cut(s) 324, 431
BseRI GAGGAG 2 cut(s) 235, 409
BseXI GCAGC 2 cut(s) 414, 709
BsgI GTGCAG 1 cut(s) 284
BshFI GGCC 2 cut(s) 212, 635
BsiHKAI GWGCWC 5 cut(s) 21, 102, 245, 269, 597
BsiSI CCGG 3 cut(s) 203, 598, 636
BslI CCNNNNNNNGG 1 cut(s) 635
BsmAI GTCTC 1 cut(s) 181
BsnI GGCC 2 cut(s) 212, 635
Bso31I GGTCTC 1 cut(s) 181
Bsp1286I GDGCHC 5 cut(s) 21, 102, 245, 269, 597
Bsp13I TCCGGA 1 cut(s) 202
Bsp143I GATC 2 cut(s) 448, 691
BspACI CCGC 4 cut(s) 233, 277, 280, 445
BspANI GGCC 2 cut(s) 212, 635
BspCNI CTCAG 2 cut(s) 88, 325
BspEI TCCGGA 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 465
BspPI GGATC 1 cut(s) 456
BspTNI GGTCTC 1 cut(s) 181
BsrI ACTGG 2 cut(s) 324, 431
BssECI CCNNGG 3 cut(s) 466, 467, 636
BssMI GATC 2 cut(s) 448, 691
Bst2UI CCWGG 2 cut(s) 173, 468
Bst4CI ACNGT 2 cut(s) 9, 217
BstC8I GCNNGC 2 cut(s) 222, 284
BstDEI CTNAG 2 cut(s) 75, 333
BstF5I GGATG 2 cut(s) 126, 403
BstKTI GATC 2 cut(s) 451, 694
BstMAI GTCTC 1 cut(s) 181
BstMBI GATC 2 cut(s) 448, 691
BstMWI GCNNNNNNNGC 1 cut(s) 273
BstNI CCWGG 2 cut(s) 173, 468
BstPAI GACNNNNGTC 1 cut(s) 164
BstSCI CCNGG 4 cut(s) 171, 466, 597, 635
BstV1I GCAGC 2 cut(s) 414, 709
BstV2I GAAGAC 3 cut(s) 61, 501, 613
BstXI CCANNNNNNTGG 1 cut(s) 220
BsuRI GGCC 2 cut(s) 212, 635
BtgZI GCGATG 1 cut(s) 239
BtsCI GGATG 2 cut(s) 126, 403
BtsIMutI CAGTG 3 cut(s) 213, 330, 438
Cac8I GCNNGC 2 cut(s) 222, 284
Cfr13I GGNCC 2 cut(s) 166, 463
CviAII CATG 4 cut(s) 112, 482, 551, 566
DdeI CTNAG 2 cut(s) 75, 333
DpnI GATC 2 cut(s) 450, 693
DpnII GATC 2 cut(s) 448, 691
DraI TTTAAA 1 cut(s) 559
EaeI YGGCCR 1 cut(s) 210
Ecl136II GAGCTC 2 cut(s) 19, 100
Eco24I GRGCYC 2 cut(s) 21, 102
Eco31I GGTCTC 1 cut(s) 181
Eco32I GATATC 1 cut(s) 671
Eco47I GGWCC 2 cut(s) 166, 463
Eco53kI GAGCTC 2 cut(s) 19, 100
Eco57I CTGAAG 3 cut(s) 57, 495, 607
EcoICRI GAGCTC 2 cut(s) 19, 100
EcoRII CCWGG 2 cut(s) 171, 466
EcoRV GATATC 1 cut(s) 671
EcoT38I GRGCYC 2 cut(s) 21, 102
FaeI CATG 4 cut(s) 115, 485, 554, 569
FaiI YATR 7 cut(s) 113, 354, 387, 483, 552, 567, 728
FatI CATG 4 cut(s) 111, 481, 550, 565
FauI CCCGC 1 cut(s) 438
Fnu4HI GCNGC 5 cut(s) 233, 277, 280, 428, 723
FokI GGATG 2 cut(s) 113, 410
FriOI GRGCYC 2 cut(s) 21, 102
Fsp4HI GCNGC 5 cut(s) 233, 277, 280, 428, 723
GluI GCNGC 5 cut(s) 233, 277, 280, 428, 723
GsuI CTGGAG 1 cut(s) 680
HaeIII GGCC 2 cut(s) 212, 635
HapII CCGG 3 cut(s) 203, 598, 636
Hin1II CATG 4 cut(s) 115, 485, 554, 569
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 4 cut(s) 66, 338, 454, 545
HpaII CCGG 3 cut(s) 203, 598, 636
HphI GGTGA 1 cut(s) 368
Hpy188I TCNGA 9 cut(s) 37, 91, 159, 453, 459, 514, 544, 626, 736
Hpy188III TCNNGA 3 cut(s) 52, 203, 255
Hpy99I CGWCG 1 cut(s) 163
HpyCH4III ACNGT 2 cut(s) 9, 217
HpyCH4V TGCA 1 cut(s) 301
HpyF10VI GCNNNNNNNGC 1 cut(s) 273
HpyF3I CTNAG 2 cut(s) 75, 333
Hsp92II CATG 4 cut(s) 115, 485, 554, 569
Kpn2I TCCGGA 1 cut(s) 202
Kzo9I GATC 2 cut(s) 448, 691
LmnI GCTCC 5 cut(s) 105, 248, 272, 365, 600
Lsp1109I GCAGC 2 cut(s) 414, 709
LweI GCATC 1 cut(s) 417
MaeIII GTNAC 3 cut(s) 3, 343, 576
MalI GATC 2 cut(s) 450, 693
MboI GATC 2 cut(s) 448, 691
MboII GAAGA 3 cut(s) 61, 501, 613
MhlI GDGCHC 5 cut(s) 21, 102, 245, 269, 597
MlsI TGGCCA 1 cut(s) 212
MluNI TGGCCA 1 cut(s) 212
MlyI GAGTC 1 cut(s) 75
MmeI TCCRAC 1 cut(s) 182
MnlI CCTC 9 cut(s) 155, 179, 256, 328, 355, 430, 489, 625, 656
Mox20I TGGCCA 1 cut(s) 212
MroI TCCGGA 1 cut(s) 202
MroXI GAANNNNTTC 1 cut(s) 42
MscI TGGCCA 1 cut(s) 212
MseI TTAA 1 cut(s) 558
MslI CAYNNNNRTG 1 cut(s) 110
Msp20I TGGCCA 1 cut(s) 212
MspI CCGG 3 cut(s) 203, 598, 636
MspR9I CCNGG 4 cut(s) 173, 468, 599, 637
MvaI CCWGG 2 cut(s) 173, 468
MwoI GCNNNNNNNGC 1 cut(s) 273
NciI CCSGG 2 cut(s) 599, 637
NdeII GATC 2 cut(s) 448, 691
NlaIII CATG 4 cut(s) 115, 485, 554, 569
NlaIV GGNNCC 1 cut(s) 465
NmuCI GTSAC 2 cut(s) 3, 576
PasI CCCWGGG 1 cut(s) 467
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 3 cut(s) 338, 454, 545
PkrI GCNGC 5 cut(s) 234, 278, 281, 429, 724
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
PshAI GACNNNNGTC 1 cut(s) 164
Psp124BI GAGCTC 2 cut(s) 21, 102
Psp6I CCWGG 2 cut(s) 171, 466
PspGI CCWGG 2 cut(s) 171, 466
PspN4I GGNNCC 1 cut(s) 465
PspPI GGNCC 2 cut(s) 166, 463
RseI CAYNNNNRTG 1 cut(s) 110
SacI GAGCTC 2 cut(s) 21, 102
SaqAI TTAA 1 cut(s) 558
SatI GCNGC 5 cut(s) 233, 277, 280, 428, 723
Sau3AI GATC 2 cut(s) 448, 691
Sau96I GGNCC 2 cut(s) 166, 463
SchI GAGTC 1 cut(s) 75
ScrFI CCNGG 4 cut(s) 173, 468, 599, 637
SduI GDGCHC 5 cut(s) 21, 102, 245, 269, 597
SetI ASST 9 cut(s) 21, 27, 43, 81, 102, 147, 308, 370, 667
SfaNI GCATC 1 cut(s) 417
SinI GGWCC 2 cut(s) 166, 463
SmiMI CAYNNNNRTG 1 cut(s) 110
SmlI CTYRAG 2 cut(s) 20, 50
SmoI CTYRAG 2 cut(s) 20, 50
SsiI CCGC 4 cut(s) 233, 277, 280, 445
SstI GAGCTC 2 cut(s) 21, 102
StyD4I CCNGG 4 cut(s) 171, 466, 597, 635
TaaI ACNGT 2 cut(s) 9, 217
TaqI TCGA 1 cut(s) 254
TaqII GACCGA 1 cut(s) 108
TauI GCSGC 3 cut(s) 235, 279, 282
TfiI GAWTC 3 cut(s) 338, 454, 545
Tru1I TTAA 1 cut(s) 558
Tru9I TTAA 1 cut(s) 558
TscAI CASTG 3 cut(s) 220, 337, 438
TseFI GTSAC 2 cut(s) 3, 576
TseI GCWGC 2 cut(s) 427, 722
Tsp45I GTSAC 2 cut(s) 3, 576
TspDTI ATGAA 3 cut(s) 242, 498, 554
TspGWI ACGGA 1 cut(s) 238
TspRI CASTG 3 cut(s) 220, 337, 438
VpaK11BI GGWCC 2 cut(s) 166, 463
XmnI GAANNNNTTC 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.