FvH4_7g13760

DNA polymerase processivity factor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000347
Physical Location & Seq
Reverse (-)
12288814 .. 12292943
4130 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g13760.t1

Sequence Viewer

Length: 648 bp
ATGGCGGCTTCGAGCCCTCTCCCGCCTCATGTTGAGGCCTATATCGAAATATCGCTGAGAACCTTCGCCACCTTCAGCTGCTGCCGCGGCAATCGCGTCTTCCGCCTCGATCTCCGCCTCTTGGAGGAGCGTATCGCCAACACCGTCGCCGACGGTCTTTCTTTGTGTCTCACGGCGGAGAAGGCCTTCGAGCTGCTCTATAGCTTGAAAAACAGTGAGGGTAATGTGGTGCACAGCTCTCCGATGCAGCTAATCTCACAATACAGCGGTGTTTTACCAGGAGTAGATTGGTCTGCTGACAGCTATGTAGTCAGCGTCCAGATTCCGGCTCTCATTTTCCGGGAGCTCATCAACAATTTGAGCACGCATGCTCCTACAGTTCAAGCCACAATGACAAGTTTAGAAATCATATTTCGTGCTGCTGATATGGAGACTGTTATGAGCGAAGAGGATTTGAGTTACATAATTCTGCTTCGGGAAGGCCAATATCCTTATACATTTAGATTTACGCTCCACCAAAAGAGTGCAATACTAAACGCTGTGAGCTTATCAGACCGGGTTACACTTAATCAGCTTTTGGATTCACGTACCGTGATACAAATACCGGTTGAGGGACTCGGCAGCATCCAGTTCTGCTTTCCGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03410 ko03420 ko03430 ko04110 ko04530 ko05161 ko05166 map03030 map03410 map03420 map03430 map04110 map04530 map05161 map05166
Pfam Domains
Protein Families
PCNA_C PCNA_N Vezatin

Protein Analysis

216

Amino Acids

23.94

Weight (kDa)

5.07

Isoelectric Point (pI)

39.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 87, 96
AciI CCGC 9 cut(s) 5, 23, 85, 87, 103, 115, 176, 267, 641
AcuI CTGAAG 1 cut(s) 58
AfaI GTAC 1 cut(s) 589
AfiI CCNNNNNNNGG 4 cut(s) 121, 124, 325, 611
AgeI ACCGGT 1 cut(s) 604
AgsI TTSAA 2 cut(s) 208, 383
AjnI CCWGG 1 cut(s) 277
AluBI AGCT 9 cut(s) 78, 193, 204, 237, 250, 303, 346, 546, 574
AluI AGCT 9 cut(s) 78, 193, 204, 237, 250, 303, 346, 546, 574
Alw21I GWGCWC 3 cut(s) 234, 348, 365
Alw26I GTCTC 2 cut(s) 173, 425
Alw44I GTGCAC 1 cut(s) 230
AlwNI CAGNNNCTG 1 cut(s) 81
AoxI GGCC 3 cut(s) 36, 183, 481
ApaLI GTGCAC 1 cut(s) 230
ApeKI GCWGC 6 cut(s) 78, 81, 193, 247, 419, 621
AsiGI ACCGGT 1 cut(s) 604
Asp700I GAANNNNTTC 1 cut(s) 185
AsuC2I CCSGG 2 cut(s) 341, 557
BaeGI GKGCMC 1 cut(s) 234
BanII GRGCYC 2 cut(s) 17, 348
BbsI GAAGAC 1 cut(s) 91
Bbv12I GWGCWC 3 cut(s) 234, 348, 365
BbvI GCAGC 6 cut(s) 65, 68, 180, 259, 406, 633
BceAI ACGGC 1 cut(s) 189
BciT130I CCWGG 1 cut(s) 279
BcnI CCSGG 2 cut(s) 341, 557
BcoDI GTCTC 2 cut(s) 173, 425
BfmI CTRYAG 2 cut(s) 199, 375
BisI GCNGC 9 cut(s) 6, 79, 82, 85, 88, 194, 248, 420, 622
BlsI GCNGC 9 cut(s) 7, 80, 83, 86, 89, 195, 249, 421, 623
Bme1390I CCNGG 3 cut(s) 279, 341, 557
BmrFI CCNGG 3 cut(s) 279, 341, 557
BmsI GCATC 2 cut(s) 234, 633
BpiI GAAGAC 1 cut(s) 91
BpuMI CCSGG 2 cut(s) 341, 557
BsaAI YACGTR 1 cut(s) 587
BsaJI CCNNGG 1 cut(s) 85
BsaWI WCCGGW 1 cut(s) 604
BsaXI ACNNNNNCTCC 2 cut(s) 355, 385
Bsc4I CCNNNNNNNGG 4 cut(s) 121, 124, 325, 611
Bse118I RCCGGY 1 cut(s) 604
Bse1I ACTGG 1 cut(s) 628
BseBI CCWGG 1 cut(s) 279
BseDI CCNNGG 1 cut(s) 85
BseGI GGATG 1 cut(s) 624
BseLI CCNNNNNNNGG 4 cut(s) 121, 124, 325, 611
BseMII CTCAG 1 cut(s) 47
BseNI ACTGG 1 cut(s) 628
BseRI GAGGAG 1 cut(s) 140
BseSI GKGCMC 1 cut(s) 234
BseXI GCAGC 6 cut(s) 65, 68, 180, 259, 406, 633
Bsh1236I CGCG 2 cut(s) 87, 96
BshFI GGCC 3 cut(s) 38, 185, 483
BshTI ACCGGT 1 cut(s) 604
BsiHKAI GWGCWC 3 cut(s) 234, 348, 365
BsiSI CCGG 4 cut(s) 326, 340, 556, 605
BslFI GGGAC 1 cut(s) 627
BslI CCNNNNNNNGG 4 cut(s) 121, 124, 325, 611
BsmAI GTCTC 2 cut(s) 173, 425
BsmFI GGGAC 1 cut(s) 627
BsnI GGCC 3 cut(s) 38, 185, 483
Bsp1286I GDGCHC 4 cut(s) 17, 234, 348, 365
Bsp143I GATC 1 cut(s) 109
BspACI CCGC 9 cut(s) 5, 23, 85, 87, 103, 115, 176, 267, 641
BspANI GGCC 3 cut(s) 38, 185, 483
BspCNI CTCAG 1 cut(s) 48
BspFNI CGCG 2 cut(s) 87, 96
BsrFI RCCGGY 1 cut(s) 604
BsrI ACTGG 1 cut(s) 628
BssAI RCCGGY 1 cut(s) 604
BssECI CCNNGG 1 cut(s) 85
BssMI GATC 1 cut(s) 109
Bst2UI CCWGG 1 cut(s) 279
Bst4CI ACNGT 6 cut(s) 145, 155, 215, 379, 436, 592
Bst6I CTCTTC 1 cut(s) 441
BstBAI YACGTR 1 cut(s) 587
BstC8I GCNNGC 2 cut(s) 365, 369
BstDEI CTNAG 1 cut(s) 56
BstDSI CCRYGG 1 cut(s) 85
BstENI CCTNNNNNAGG 1 cut(s) 122
BstF5I GGATG 1 cut(s) 624
BstFNI CGCG 2 cut(s) 87, 96
BstKTI GATC 1 cut(s) 112
BstMAI GTCTC 2 cut(s) 173, 425
BstMBI GATC 1 cut(s) 109
BstMWI GCNNNNNNNGC 5 cut(s) 84, 87, 93, 102, 182
BstNI CCWGG 1 cut(s) 279
BstNSI RCATGY 1 cut(s) 371
BstSCI CCNGG 3 cut(s) 277, 339, 555
BstSFI CTRYAG 2 cut(s) 199, 375
BstSLI GKGCMC 1 cut(s) 234
BstUI CGCG 2 cut(s) 87, 96
BstV1I GCAGC 6 cut(s) 65, 68, 180, 259, 406, 633
BstV2I GAAGAC 1 cut(s) 91
BsuRI GGCC 3 cut(s) 38, 185, 483
BtgI CCRYGG 1 cut(s) 85
BtsCI GGATG 1 cut(s) 624
BtsIMutI CAGTG 1 cut(s) 220
Cac8I GCNNGC 2 cut(s) 365, 369
CaiI CAGNNNCTG 1 cut(s) 81
Cfr10I RCCGGY 1 cut(s) 604
Cfr42I CCGCGG 1 cut(s) 88
CseI GACGC 2 cut(s) 85, 304
Csp6I GTAC 1 cut(s) 588
CspAI ACCGGT 1 cut(s) 604
CviAII CATG 2 cut(s) 29, 368
CviQI GTAC 1 cut(s) 588
DdeI CTNAG 1 cut(s) 56
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
Eam1104I CTCTTC 1 cut(s) 441
EarI CTCTTC 1 cut(s) 441
EciI GGCGGA 3 cut(s) 92, 104, 191
Ecl136II GAGCTC 1 cut(s) 346
Eco147I AGGCCT 2 cut(s) 38, 185
Eco24I GRGCYC 2 cut(s) 17, 348
Eco53kI GAGCTC 1 cut(s) 346
Eco57I CTGAAG 1 cut(s) 58
EcoICRI GAGCTC 1 cut(s) 346
EcoNI CCTNNNNNAGG 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 277
EcoT38I GRGCYC 2 cut(s) 17, 348
FaeI CATG 2 cut(s) 32, 371
FaqI GGGAC 1 cut(s) 627
FatI CATG 2 cut(s) 28, 367
FauI CCCGC 1 cut(s) 30
Fnu4HI GCNGC 9 cut(s) 6, 79, 82, 85, 88, 194, 248, 420, 622
FokI GGATG 1 cut(s) 611
FriOI GRGCYC 2 cut(s) 17, 348
Fsp4HI GCNGC 9 cut(s) 6, 79, 82, 85, 88, 194, 248, 420, 622
GluI GCNGC 9 cut(s) 6, 79, 82, 85, 88, 194, 248, 420, 622
HaeIII GGCC 3 cut(s) 38, 185, 483
HapII CCGG 4 cut(s) 326, 340, 556, 605
HgaI GACGC 2 cut(s) 85, 304
Hin1II CATG 2 cut(s) 32, 371
HinfI GANTC 3 cut(s) 322, 581, 615
HpaII CCGG 4 cut(s) 326, 340, 556, 605
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 2 cut(s) 243, 553
Hpy188III TCNNGA 2 cut(s) 319, 476
Hpy8I GTNNAC 1 cut(s) 232
Hpy99I CGWCG 2 cut(s) 149, 155
HpyAV CCTTC 5 cut(s) 73, 82, 175, 196, 473
HpyCH4III ACNGT 6 cut(s) 145, 155, 215, 379, 436, 592
HpyCH4IV ACGT 1 cut(s) 586
HpyCH4V TGCA 3 cut(s) 232, 247, 527
HpyF10VI GCNNNNNNNGC 5 cut(s) 84, 87, 93, 102, 182
HpyF3I CTNAG 1 cut(s) 56
HpySE526I ACGT 1 cut(s) 586
Hsp92II CATG 2 cut(s) 32, 371
KspI CCGCGG 1 cut(s) 88
Kzo9I GATC 1 cut(s) 109
LmnI GCTCC 4 cut(s) 127, 343, 376, 516
LpnPI CCDG 8 cut(s) 264, 291, 332, 339, 353, 569, 618, 641
Lsp1109I GCAGC 6 cut(s) 65, 68, 180, 259, 406, 633
LweI GCATC 2 cut(s) 234, 633
MaeII ACGT 1 cut(s) 586
MaeIII GTNAC 2 cut(s) 458, 559
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 2 cut(s) 91, 458
MhlI GDGCHC 4 cut(s) 17, 234, 348, 365
MluCI AATT 2 cut(s) 355, 465
MlyI GAGTC 1 cut(s) 609
MnlI CCTC 9 cut(s) 27, 28, 36, 116, 118, 128, 211, 442, 604
MroXI GAANNNNTTC 1 cut(s) 185
MseI TTAA 1 cut(s) 567
MspA1I CMGCKG 3 cut(s) 78, 87, 267
MspI CCGG 4 cut(s) 326, 340, 556, 605
MspR9I CCNGG 3 cut(s) 279, 341, 557
MvaI CCWGG 1 cut(s) 279
MvnI CGCG 2 cut(s) 87, 96
MwoI GCNNNNNNNGC 5 cut(s) 84, 87, 93, 102, 182
NciI CCSGG 2 cut(s) 341, 557
NdeII GATC 1 cut(s) 109
NlaIII CATG 2 cut(s) 32, 371
NmeAIII GCCGAG 1 cut(s) 597
NspI RCATGY 1 cut(s) 371
PaeI GCATGC 1 cut(s) 371
PceI AGGCCT 2 cut(s) 38, 185
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PdmI GAANNNNTTC 1 cut(s) 185
PfeI GAWTC 2 cut(s) 322, 581
PfoI TCCNGGA 1 cut(s) 339
PinAI ACCGGT 1 cut(s) 604
PkrI GCNGC 9 cut(s) 7, 80, 83, 86, 89, 195, 249, 421, 623
PleI GAGTC 1 cut(s) 609
PpsI GAGTC 1 cut(s) 609
Ppu21I YACGTR 1 cut(s) 587
Psp124BI GAGCTC 1 cut(s) 348
Psp6I CCWGG 1 cut(s) 277
PspGI CCWGG 1 cut(s) 277
PstNI CAGNNNCTG 1 cut(s) 81
PvuII CAGCTG 1 cut(s) 78
RsaI GTAC 1 cut(s) 589
RsaNI GTAC 1 cut(s) 588
SacI GAGCTC 1 cut(s) 348
SacII CCGCGG 1 cut(s) 88
SaqAI TTAA 1 cut(s) 567
SatI GCNGC 9 cut(s) 6, 79, 82, 85, 88, 194, 248, 420, 622
Sau3AI GATC 1 cut(s) 109
SchI GAGTC 1 cut(s) 609
ScrFI CCNGG 3 cut(s) 279, 341, 557
SduI GDGCHC 4 cut(s) 17, 234, 348, 365
SfaNI GCATC 2 cut(s) 234, 633
SfcI CTRYAG 2 cut(s) 199, 375
Sfr303I CCGCGG 1 cut(s) 88
SgrBI CCGCGG 1 cut(s) 88
SphI GCATGC 1 cut(s) 371
Sse9I AATT 2 cut(s) 355, 465
SseBI AGGCCT 2 cut(s) 38, 185
SsiI CCGC 9 cut(s) 5, 23, 85, 87, 103, 115, 176, 267, 641
SstI GAGCTC 1 cut(s) 348
StuI AGGCCT 2 cut(s) 38, 185
StyD4I CCNGG 3 cut(s) 277, 339, 555
TaaI ACNGT 6 cut(s) 145, 155, 215, 379, 436, 592
TaiI ACGT 1 cut(s) 589
TaqI TCGA 4 cut(s) 11, 45, 108, 189
TasI AATT 2 cut(s) 355, 465
TauI GCSGC 3 cut(s) 8, 87, 90
TfiI GAWTC 2 cut(s) 322, 581
Tru1I TTAA 1 cut(s) 567
Tru9I TTAA 1 cut(s) 567
TscAI CASTG 1 cut(s) 220
TseI GCWGC 6 cut(s) 78, 81, 193, 247, 419, 621
TspRI CASTG 1 cut(s) 220
VneI GTGCAC 1 cut(s) 230
XagI CCTNNNNNAGG 1 cut(s) 122
XceI RCATGY 1 cut(s) 371
XcmI CCANNNNNNNNNTGG 1 cut(s) 285
XmnI GAANNNNTTC 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.