Rh1CG233200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000347
Physical Location & Seq
Reverse (-)
49023375 .. 49023823
449 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG233200.1

Sequence Viewer

Length: 258 bp
ATGCCGCGGTGGTTTGAGCTCAACCTTGATCGCCGCAAAGCGATTTCGCTAAAGGAGGCCGTCGAAGCCATGGCTCAAGTAGCCTTAACCGACATAGAGCTCGTCAGCAGTCCCCAAAAGACCGACCTCTGCGTCACTCCGGAGATCGTTGCACTGCTTCGAGTGCTCCGAAAGCCGGAATCTGCAGTTCAATATGGAAATCTTCCACCGCCAATTGTAGCTGAACAATCGATCCTGATGAACCGGGTGATCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.56

Weight (kDa)

6.21

Isoelectric Point (pI)

63.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 131
AccII CGCG 1 cut(s) 7
AccIII TCCGGA 1 cut(s) 139
AciI CCGC 4 cut(s) 5, 7, 34, 209
AclWI GGATC 1 cut(s) 226
AfiI CCNNNNNNNGG 1 cut(s) 175
AgsI TTSAA 1 cut(s) 191
AloI GAACNNNNNNTCC 2 cut(s) 216, 248
AluBI AGCT 3 cut(s) 19, 100, 221
AluI AGCT 3 cut(s) 19, 100, 221
Alw21I GWGCWC 3 cut(s) 21, 102, 168
AlwI GGATC 1 cut(s) 226
Aor13HI TCCGGA 1 cut(s) 139
AoxI GGCC 1 cut(s) 57
AsuC2I CCSGG 1 cut(s) 245
BanII GRGCYC 2 cut(s) 21, 102
Bbv12I GWGCWC 3 cut(s) 21, 102, 168
BceAI ACGGC 1 cut(s) 44
BclI TGATCA 1 cut(s) 249
BcnI CCSGG 1 cut(s) 245
BfmI CTRYAG 1 cut(s) 183
BisI GCNGC 2 cut(s) 5, 34
BlsI GCNGC 2 cut(s) 6, 35
Bme1390I CCNGG 1 cut(s) 245
BmrFI CCNGG 1 cut(s) 245
BpuEI CTTGAG 1 cut(s) 60
BpuMI CCSGG 1 cut(s) 245
Bsa29I ATCGAT 1 cut(s) 230
BsaJI CCNNGG 2 cut(s) 5, 69
BsaWI WCCGGW 1 cut(s) 139
Bsc4I CCNNNNNNNGG 1 cut(s) 175
BseAI TCCGGA 1 cut(s) 139
BseCI ATCGAT 1 cut(s) 230
BseDI CCNNGG 2 cut(s) 5, 69
BseLI CCNNNNNNNGG 1 cut(s) 175
Bsh1236I CGCG 1 cut(s) 7
BshFI GGCC 1 cut(s) 59
BshVI ATCGAT 1 cut(s) 230
BsiHKAI GWGCWC 3 cut(s) 21, 102, 168
BsiSI CCGG 3 cut(s) 140, 176, 244
BslFI GGGAC 1 cut(s) 96
BslI CCNNNNNNNGG 1 cut(s) 175
BsmFI GGGAC 1 cut(s) 96
BsnI GGCC 1 cut(s) 59
Bsp1286I GDGCHC 3 cut(s) 21, 102, 168
Bsp13I TCCGGA 1 cut(s) 139
Bsp143I GATC 4 cut(s) 28, 144, 231, 249
Bsp19I CCATGG 1 cut(s) 69
BspACI CCGC 4 cut(s) 5, 7, 34, 209
BspANI GGCC 1 cut(s) 59
BspDI ATCGAT 1 cut(s) 230
BspEI TCCGGA 1 cut(s) 139
BspFNI CGCG 1 cut(s) 7
BspMAI CTGCAG 1 cut(s) 187
BspPI GGATC 1 cut(s) 226
BssECI CCNNGG 2 cut(s) 5, 69
BssMI GATC 4 cut(s) 28, 144, 231, 249
BssT1I CCWWGG 1 cut(s) 69
BstDSI CCRYGG 2 cut(s) 5, 69
BstFNI CGCG 1 cut(s) 7
BstKTI GATC 4 cut(s) 31, 147, 234, 252
BstMBI GATC 4 cut(s) 28, 144, 231, 249
BstMWI GCNNNNNNNGC 4 cut(s) 65, 80, 163, 172
BstSCI CCNGG 1 cut(s) 243
BstSFI CTRYAG 1 cut(s) 183
BstUI CGCG 1 cut(s) 7
Bsu15I ATCGAT 1 cut(s) 230
BsuRI GGCC 1 cut(s) 59
BsuTUI ATCGAT 1 cut(s) 230
BtgI CCRYGG 2 cut(s) 5, 69
BtsI GCAGTG 1 cut(s) 152
BtsIMutI CAGTG 1 cut(s) 152
Cfr42I CCGCGG 1 cut(s) 8
ClaI ATCGAT 1 cut(s) 230
CseI GACGC 1 cut(s) 121
CviAII CATG 2 cut(s) 70, 253
CviJI RGCY 8 cut(s) 19, 59, 68, 74, 83, 100, 175, 221
CviKI_1 RGCY 8 cut(s) 19, 59, 68, 74, 83, 100, 175, 221
DpnI GATC 4 cut(s) 30, 146, 233, 251
DpnII GATC 4 cut(s) 28, 144, 231, 249
DrdI GACNNNNNNGTC 1 cut(s) 131
DseDI GACNNNNNNGTC 1 cut(s) 131
Ecl136II GAGCTC 2 cut(s) 19, 100
Eco130I CCWWGG 1 cut(s) 69
Eco24I GRGCYC 2 cut(s) 21, 102
Eco53kI GAGCTC 2 cut(s) 19, 100
EcoICRI GAGCTC 2 cut(s) 19, 100
EcoT14I CCWWGG 1 cut(s) 69
EcoT38I GRGCYC 2 cut(s) 21, 102
ErhI CCWWGG 1 cut(s) 69
FaeI CATG 2 cut(s) 73, 256
FaiI YATR 4 cut(s) 71, 95, 195, 254
FaqI GGGAC 1 cut(s) 96
FatI CATG 2 cut(s) 69, 252
FbaI TGATCA 1 cut(s) 249
Fnu4HI GCNGC 2 cut(s) 5, 34
FriOI GRGCYC 2 cut(s) 21, 102
Fsp4HI GCNGC 2 cut(s) 5, 34
GluI GCNGC 2 cut(s) 5, 34
HaeIII GGCC 1 cut(s) 59
HapII CCGG 3 cut(s) 140, 176, 244
HgaI GACGC 1 cut(s) 121
Hin1II CATG 2 cut(s) 73, 256
HinfI GANTC 1 cut(s) 179
HpaII CCGG 3 cut(s) 140, 176, 244
Hpy188I TCNGA 1 cut(s) 170
Hpy188III TCNNGA 2 cut(s) 140, 235
Hpy99I CGWCG 1 cut(s) 65
HpyCH4V TGCA 2 cut(s) 152, 185
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 80, 163, 172
Hsp92II CATG 2 cut(s) 73, 256
Kpn2I TCCGGA 1 cut(s) 139
Ksp22I TGATCA 1 cut(s) 249
KspI CCGCGG 1 cut(s) 8
Kzo9I GATC 4 cut(s) 28, 144, 231, 249
LmnI GCTCC 1 cut(s) 171
LpnPI CCDG 3 cut(s) 153, 189, 248
MaeIII GTNAC 1 cut(s) 133
MalI GATC 4 cut(s) 30, 146, 233, 251
MboI GATC 4 cut(s) 28, 144, 231, 249
MboII GAAGA 1 cut(s) 194
MfeI CAATTG 1 cut(s) 213
MhlI GDGCHC 3 cut(s) 21, 102, 168
MluCI AATT 1 cut(s) 213
MnlI CCTC 2 cut(s) 49, 137
MroI TCCGGA 1 cut(s) 139
MseI TTAA 1 cut(s) 86
MspA1I CMGCKG 1 cut(s) 7
MspI CCGG 3 cut(s) 140, 176, 244
MspR9I CCNGG 1 cut(s) 245
MunI CAATTG 1 cut(s) 213
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 4 cut(s) 65, 80, 163, 172
NciI CCSGG 1 cut(s) 245
NcoI CCATGG 1 cut(s) 69
NdeII GATC 4 cut(s) 28, 144, 231, 249
NlaIII CATG 2 cut(s) 73, 256
NmuCI GTSAC 1 cut(s) 133
PcsI WCGNNNNNNNCGW 1 cut(s) 166
PfeI GAWTC 1 cut(s) 179
PkrI GCNGC 2 cut(s) 6, 35
Psp124BI GAGCTC 2 cut(s) 21, 102
PstI CTGCAG 1 cut(s) 187
SacI GAGCTC 2 cut(s) 21, 102
SacII CCGCGG 1 cut(s) 8
SaqAI TTAA 1 cut(s) 86
SatI GCNGC 2 cut(s) 5, 34
Sau3AI GATC 4 cut(s) 28, 144, 231, 249
ScrFI CCNGG 1 cut(s) 245
SduI GDGCHC 3 cut(s) 21, 102, 168
SetI ASST 5 cut(s) 21, 27, 102, 129, 223
SfcI CTRYAG 1 cut(s) 183
Sfr303I CCGCGG 1 cut(s) 8
SgeI CNNG 9 cut(s) 18, 38, 82, 89, 113, 152, 173, 188, 247
SgrBI CCGCGG 1 cut(s) 8
SmlI CTYRAG 1 cut(s) 75
SmoI CTYRAG 1 cut(s) 75
Sse9I AATT 1 cut(s) 213
SsiI CCGC 4 cut(s) 5, 7, 34, 209
SstI GAGCTC 2 cut(s) 21, 102
StyD4I CCNGG 1 cut(s) 243
StyI CCWWGG 1 cut(s) 69
TaqI TCGA 3 cut(s) 63, 160, 230
TaqII GACCGA 1 cut(s) 137
TasI AATT 1 cut(s) 213
TauI GCSGC 2 cut(s) 7, 36
TfiI GAWTC 1 cut(s) 179
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TscAI CASTG 1 cut(s) 159
TseFI GTSAC 1 cut(s) 133
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 1 cut(s) 254
TspRI CASTG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.