Prupe.2G163400_v2.0.a1

DNA polymerase processivity factor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000347
Physical Location & Seq
Reverse (-)
21362439 .. 21364802
2364 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G163400.1

Sequence Viewer

Length: 774 bp
ATGTTTGGACTGAGCATAGATCAAGGTGCTGTTCGTCTTCTAAGGAGGGCTGTGGCACCCTTCATTCAGATGCCTTGCTTCTATGGCAAAATGTACATCTCACCAGATGACCTCACATTTATAGCAGCCTCAACTCCCAACCCCACCGTCCATAACCCGAGCGTTGTCACAACCTTGCGTTTGCGGCCTTCCTTCTTCAGCAACTTCAACTGCGATGAAAGCCTCTGTCTTGTCGTCGACCTCAACCATTTGTACCACATTCTCTGTCTAGCCAGAGATGACGATTATCTTGGTATCTATGGTAATGGCACCCATGACCGGATTTCTATTGTGCTCCTCGGTGCCGCAACTCGGGATTTCCGTGATGCGGACATGGACGTGGTTTCAATTCACCATGGTCAGATGAATGTACCTCAGTTCCAATATGAATATCAAGTGATCGTTGGGATACCTTCGATGCTGTTTAGAACTTCTATCGTGGAACTGCATCAATTTGGGGTGACAGTTTTTGCAGAGGTGACAGATACTCAAGTTAAGTTCTCTGTCGGAAATGAGCAGGTTGTTTTCAGCAAAGAGCTGGAGCAATGTGTTATTGGGGGTGCCGTGAGCGAAGATCCTGTTTCCTTGGTGTTCAGTCTCTGGCACGTTCAGGCGATGGTGCATGCTTCAGCTGTGTCAGACAGGGTGTGGTTGCTCGGCCAGTCCAACGGTTTACATGTCATGCTGAACTGCCCTGTTGGTGAAAGCGGCAACCGCATGTTTTACTTTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03410 ko03420 ko03430 ko04110 ko04530 ko05161 ko05166 map03030 map03410 map03420 map03430 map04110 map04530 map05161 map05166
Pfam Domains
Protein Families
PCNA_C PCNA_N Vezatin

Protein Analysis

258

Amino Acids

28.63

Weight (kDa)

5.33

Isoelectric Point (pI)

30.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 547
AccB1I GGYRCC 4 cut(s) 55, 308, 341, 599
AccI GTMKAC 1 cut(s) 237
AciI CCGC 5 cut(s) 184, 345, 368, 747, 754
AclWI GGATC 1 cut(s) 608
AcoI YGGCCR 1 cut(s) 697
AcuI CTGAAG 2 cut(s) 181, 651
AfaI GTAC 3 cut(s) 95, 254, 411
AfiI CCNNNNNNNGG 3 cut(s) 318, 351, 367
AflIII ACRYGT 1 cut(s) 715
AgsI TTSAA 2 cut(s) 208, 387
AjiI CACGTC 1 cut(s) 379
AluBI AGCT 2 cut(s) 577, 671
AluI AGCT 2 cut(s) 577, 671
Alw21I GWGCWC 1 cut(s) 336
Alw26I GTCTC 1 cut(s) 641
AlwI GGATC 1 cut(s) 608
AlwNI CAGNNNCTG 1 cut(s) 639
Ama87I CYCGRG 2 cut(s) 157, 351
AoxI GGCC 2 cut(s) 185, 697
ApeKI GCWGC 1 cut(s) 125
AsuHPI GGTGA 5 cut(s) 93, 383, 511, 529, 752
AvaI CYCGRG 2 cut(s) 157, 351
BaeI ACNNNNGTAYC 2 cut(s) 516, 549
BanI GGYRCC 4 cut(s) 55, 308, 341, 599
BbsI GAAGAC 1 cut(s) 29
Bbv12I GWGCWC 1 cut(s) 336
BbvI GCAGC 1 cut(s) 137
BccI CCATC 1 cut(s) 649
BceAI ACGGC 1 cut(s) 587
BciVI GTATCC 1 cut(s) 441
BcoDI GTCTC 1 cut(s) 641
BfaI CTAG 1 cut(s) 269
BfuAI ACCTGC 1 cut(s) 547
BfuI GTATCC 1 cut(s) 441
BisI GCNGC 4 cut(s) 126, 185, 345, 748
BlsI GCNGC 4 cut(s) 127, 186, 346, 749
BmeT110I CYCGRG 2 cut(s) 157, 351
BmgBI CACGTC 1 cut(s) 379
BmiI GGNNCC 4 cut(s) 57, 310, 343, 601
BmsI GCATC 4 cut(s) 60, 355, 447, 496
BpiI GAAGAC 1 cut(s) 29
BpmI CTGGAG 1 cut(s) 599
BpuEI CTTGAG 1 cut(s) 513
BsaJI CCNNGG 3 cut(s) 337, 394, 624
BsaWI WCCGGW 1 cut(s) 318
Bsc4I CCNNNNNNNGG 3 cut(s) 318, 351, 367
Bse1I ACTGG 1 cut(s) 700
Bse3DI GCAATG 1 cut(s) 590
BseDI CCNNGG 3 cut(s) 337, 394, 624
BseLI CCNNNNNNNGG 3 cut(s) 318, 351, 367
BseMI GCAATG 1 cut(s) 590
BseMII CTCAG 1 cut(s) 428
BseNI ACTGG 1 cut(s) 700
BseRI GAGGAG 1 cut(s) 326
BseXI GCAGC 1 cut(s) 137
BshFI GGCC 2 cut(s) 187, 699
BshNI GGYRCC 4 cut(s) 55, 308, 341, 599
BsiHKAI GWGCWC 1 cut(s) 336
BsiHKCI CYCGRG 2 cut(s) 157, 351
BsiSI CCGG 1 cut(s) 319
BslI CCNNNNNNNGG 3 cut(s) 318, 351, 367
BsmAI GTCTC 1 cut(s) 641
BsnI GGCC 2 cut(s) 187, 699
BsoBI CYCGRG 2 cut(s) 157, 351
Bsp1286I GDGCHC 1 cut(s) 336
Bsp1407I TGTACA 1 cut(s) 93
Bsp143I GATC 3 cut(s) 19, 438, 613
Bsp19I CCATGG 1 cut(s) 394
BspACI CCGC 5 cut(s) 184, 345, 368, 747, 754
BspANI GGCC 2 cut(s) 187, 699
BspCNI CTCAG 1 cut(s) 427
BspLI GGNNCC 4 cut(s) 57, 310, 343, 601
BspMI ACCTGC 1 cut(s) 547
BspPI GGATC 1 cut(s) 608
BspT107I GGYRCC 4 cut(s) 55, 308, 341, 599
BsrDI GCAATG 1 cut(s) 590
BsrGI TGTACA 1 cut(s) 93
BsrI ACTGG 1 cut(s) 700
BssECI CCNNGG 3 cut(s) 337, 394, 624
BssMI GATC 3 cut(s) 19, 438, 613
BssT1I CCWWGG 2 cut(s) 394, 624
Bst4CI ACNGT 3 cut(s) 148, 505, 710
BstAUI TGTACA 1 cut(s) 93
BstC8I GCNNGC 1 cut(s) 663
BstDEI CTNAG 3 cut(s) 11, 41, 414
BstDSI CCRYGG 1 cut(s) 394
BstKTI GATC 3 cut(s) 22, 441, 616
BstMAI GTCTC 1 cut(s) 641
BstMBI GATC 3 cut(s) 19, 438, 613
BstMWI GCNNNNNNNGC 4 cut(s) 84, 184, 219, 753
BstNSI RCATGY 3 cut(s) 665, 719, 760
BstV1I GCAGC 1 cut(s) 137
BstV2I GAAGAC 1 cut(s) 29
BstX2I RGATCY 1 cut(s) 613
BstYI RGATCY 1 cut(s) 613
BsuI GTATCC 1 cut(s) 441
BsuRI GGCC 2 cut(s) 187, 699
BtgI CCRYGG 1 cut(s) 394
BtgZI GCGATG 2 cut(s) 228, 668
BtrI CACGTC 1 cut(s) 379
BveI ACCTGC 1 cut(s) 547
Cac8I GCNNGC 1 cut(s) 663
CaiI CAGNNNCTG 1 cut(s) 639
Csp6I GTAC 3 cut(s) 94, 253, 410
CviAII CATG 7 cut(s) 314, 373, 395, 662, 716, 721, 757
CviJI RGCY 9 cut(s) 50, 128, 187, 222, 272, 577, 671, 699, 771
CviKI_1 RGCY 9 cut(s) 50, 128, 187, 222, 272, 577, 671, 699, 771
CviQI GTAC 3 cut(s) 94, 253, 410
DdeI CTNAG 3 cut(s) 11, 41, 414
DpnI GATC 3 cut(s) 21, 440, 615
DpnII GATC 3 cut(s) 19, 438, 613
EaeI YGGCCR 1 cut(s) 697
Eco130I CCWWGG 2 cut(s) 394, 624
Eco57I CTGAAG 2 cut(s) 181, 651
Eco88I CYCGRG 2 cut(s) 157, 351
EcoT14I CCWWGG 2 cut(s) 394, 624
ErhI CCWWGG 2 cut(s) 394, 624
FaeI CATG 7 cut(s) 317, 376, 398, 665, 719, 724, 760
FatI CATG 7 cut(s) 313, 372, 394, 661, 715, 720, 756
FblI GTMKAC 1 cut(s) 237
Fnu4HI GCNGC 4 cut(s) 126, 185, 345, 748
Fsp4HI GCNGC 4 cut(s) 126, 185, 345, 748
FspBI CTAG 1 cut(s) 269
GluI GCNGC 4 cut(s) 126, 185, 345, 748
GsuI CTGGAG 1 cut(s) 599
HaeIII GGCC 2 cut(s) 187, 699
HapII CCGG 1 cut(s) 319
Hin1II CATG 7 cut(s) 317, 376, 398, 665, 719, 724, 760
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HpaII CCGG 1 cut(s) 319
HphI GGTGA 5 cut(s) 93, 383, 511, 529, 752
Hpy166II GTNNAC 2 cut(s) 238, 713
Hpy188I TCNGA 4 cut(s) 69, 402, 548, 679
Hpy188III TCNNGA 1 cut(s) 353
Hpy8I GTNNAC 2 cut(s) 238, 713
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 4 cut(s) 70, 198, 202, 462
HpyCH4III ACNGT 3 cut(s) 148, 505, 710
HpyCH4IV ACGT 2 cut(s) 378, 645
HpyCH4V TGCA 3 cut(s) 487, 512, 661
HpyF10VI GCNNNNNNNGC 4 cut(s) 84, 184, 219, 753
HpyF3I CTNAG 3 cut(s) 11, 41, 414
HpySE526I ACGT 2 cut(s) 378, 645
Hsp92II CATG 7 cut(s) 317, 376, 398, 665, 719, 724, 760
Kzo9I GATC 3 cut(s) 19, 438, 613
LmnI GCTCC 2 cut(s) 339, 580
Lsp1109I GCAGC 1 cut(s) 137
LweI GCATC 4 cut(s) 60, 355, 447, 496
MaeI CTAG 1 cut(s) 269
MaeII ACGT 2 cut(s) 378, 645
MaeIII GTNAC 3 cut(s) 166, 499, 517
MalI GATC 3 cut(s) 21, 440, 615
MboI GATC 3 cut(s) 19, 438, 613
MboII GAAGA 3 cut(s) 29, 187, 623
MflI RGATCY 1 cut(s) 613
MhlI GDGCHC 1 cut(s) 336
MluCI AATT 2 cut(s) 387, 491
MmeI TCCRAC 2 cut(s) 526, 729
MnlI CCTC 8 cut(s) 39, 122, 139, 233, 251, 347, 423, 508
MseI TTAA 1 cut(s) 534
MslI CAYNNNNRTG 2 cut(s) 68, 377
MspA1I CMGCKG 1 cut(s) 671
MspI CCGG 1 cut(s) 319
MwoI GCNNNNNNNGC 4 cut(s) 84, 184, 219, 753
NcoI CCATGG 1 cut(s) 394
NdeII GATC 3 cut(s) 19, 438, 613
NlaIII CATG 7 cut(s) 317, 376, 398, 665, 719, 724, 760
NlaIV GGNNCC 4 cut(s) 57, 310, 343, 601
NmeAIII GCCGAG 1 cut(s) 675
NmuCI GTSAC 3 cut(s) 166, 499, 517
NspI RCATGY 3 cut(s) 665, 719, 760
PaeI GCATGC 1 cut(s) 665
PciI ACATGT 1 cut(s) 715
PcsI WCGNNNNNNNCGW 1 cut(s) 358
PkrI GCNGC 4 cut(s) 127, 186, 346, 749
PscI ACATGT 1 cut(s) 715
PspN4I GGNNCC 4 cut(s) 57, 310, 343, 601
PstNI CAGNNNCTG 1 cut(s) 639
PsuI RGATCY 1 cut(s) 613
PvuII CAGCTG 1 cut(s) 671
RsaI GTAC 3 cut(s) 95, 254, 411
RsaNI GTAC 3 cut(s) 94, 253, 410
RseI CAYNNNNRTG 2 cut(s) 68, 377
SalI GTCGAC 1 cut(s) 236
SaqAI TTAA 1 cut(s) 534
SatI GCNGC 4 cut(s) 126, 185, 345, 748
Sau3AI GATC 3 cut(s) 19, 438, 613
SduI GDGCHC 1 cut(s) 336
SfaNI GCATC 4 cut(s) 60, 355, 447, 496
SmiMI CAYNNNNRTG 2 cut(s) 68, 377
SmlI CTYRAG 1 cut(s) 528
SmoI CTYRAG 1 cut(s) 528
SphI GCATGC 1 cut(s) 665
Sse9I AATT 2 cut(s) 387, 491
SsiI CCGC 5 cut(s) 184, 345, 368, 747, 754
SspMI CTAG 1 cut(s) 269
StyI CCWWGG 2 cut(s) 394, 624
TaaI ACNGT 3 cut(s) 148, 505, 710
TaiI ACGT 2 cut(s) 381, 648
TaqI TCGA 2 cut(s) 237, 455
TasI AATT 2 cut(s) 387, 491
TatI WGTACW 1 cut(s) 93
TauI GCSGC 3 cut(s) 187, 347, 750
Tru1I TTAA 1 cut(s) 534
Tru9I TTAA 1 cut(s) 534
TseFI GTSAC 3 cut(s) 166, 499, 517
TseI GCWGC 1 cut(s) 125
Tsp45I GTSAC 3 cut(s) 166, 499, 517
TspDTI ATGAA 4 cut(s) 52, 231, 419, 441
TspGWI ACGGA 1 cut(s) 350
XceI RCATGY 3 cut(s) 665, 719, 760
XmiI GTMKAC 1 cut(s) 237
XspI CTAG 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.