Rmu_sc0005552.1_g000004

DNA polymerase processivity factor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005552.1
OG0000347
Physical Location & Seq
Forward (+)
19487 .. 21221
1735 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005552.1_g000004.1.cds

Sequence Viewer

Length: 1011 bp
atgagcgccgactcgtgggagacggcgccggcttcaccggaggacgaggtcatgtcggaggcggcggcggcggcagcggcagcggcggcgtcttcatcatcggaggaggttgtggaagacacagactctgatcagaccaccatcgcgtcgtcgtcgtcgtcctcggcggagaagaggcaaaatctctggttttatgcggagctgaaccaagtccgtcttctccagagggccttgagacccctgtttcagacagcctacaccgaccgagagtacccggacgacatgttcctcgccggacacatccgcgacgccggccacctcagcatatcgcgggacgggattcttctgatcagcacaacctctttcccgcctcatcttgacgcctatctccaactgcctctcgcaaacttctccgcctttcgctgccgcaaggagcgcgtgctggacctccacctccgcctcttggagaaccgaatcaacagtaccatcgacgattatgaagacgatgatggcttttctgtatgcttctccggagcgaagccgaactacaacgccctgctctattctctgagggacagggatgctgttgccgtgcacagctctgagatggcgctcatttcctcatatcggggttctttggggggattggattggtcagattacagttatatagtgagcattgagatgccggcccagatttttaggcaacttatcaattctctgagcttttatgggtttgaagttcatgccgatgtgacagcgactcgaattatgttccgtgtagtcaataaagtggtttttctggaggaaggggctgagagataccggattctgcgtgagaggggtcaatatccatttttgttggaattcggtctccatcataagagtgcattcctgaatgcggcgagtttatcagacagagttaggctgcaccagcttttggatttacgcactgtgttggaggtacctgttaatggactcggtagcatcatgttttgttctaggctttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03410 ko03420 ko03430 ko04110 ko04530 ko05161 ko05166 map03030 map03410 map03420 map03430 map04110 map04530 map05161 map05166
Pfam Domains
Protein Families
PCNA_C PCNA_N Vezatin

Protein Analysis

336

Amino Acids

37.69

Weight (kDa)

5.03

Isoelectric Point (pI)

44.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 964
AccB1I GGYRCC 2 cut(s) 25, 964
AccB7I CCANNNNNTGG 1 cut(s) 940
AccII CGCG 4 cut(s) 146, 306, 331, 438
AccIII TCCGGA 1 cut(s) 530
AcoI YGGCCR 1 cut(s) 313
AcsI RAATTY 1 cut(s) 866
AcyI GRCGYC 4 cut(s) 26, 89, 309, 381
AfaI GTAC 3 cut(s) 272, 484, 966
AfiI CCNNNNNNNGG 6 cut(s) 15, 463, 627, 901, 940, 974
AflIII ACRYGT 1 cut(s) 282
AgsI TTSAA 1 cut(s) 740
AjuI GAANNNNNNNTTGG 2 cut(s) 201, 233
AloI GAACNNNNNNTCC 2 cut(s) 269, 301
AluBI AGCT 4 cut(s) 202, 600, 726, 937
AluI AGCT 4 cut(s) 202, 600, 726, 937
Alw21I GWGCWC 1 cut(s) 597
Alw26I GTCTC 3 cut(s) 14, 229, 878
Alw44I GTGCAC 1 cut(s) 593
AlwNI CAGNNNCTG 1 cut(s) 128
Aor13HI TCCGGA 1 cut(s) 530
AoxI GGCC 3 cut(s) 228, 313, 690
ApaLI GTGCAC 1 cut(s) 593
ApeKI GCWGC 4 cut(s) 74, 80, 423, 928
ApoI RAATTY 1 cut(s) 866
Asp718I GGTACC 1 cut(s) 964
AspLEI GCGC 4 cut(s) 8, 28, 438, 613
AspS9I GGNCC 3 cut(s) 228, 445, 691
AsuC2I CCSGG 1 cut(s) 275
AsuHPI GGTGA 1 cut(s) 27
AvaII GGWCC 1 cut(s) 445
BaeGI GKGCMC 1 cut(s) 597
BanI GGYRCC 2 cut(s) 25, 964
BarI GAAGNNNNNNTAC 2 cut(s) 530, 562
BauI CACGAG 1 cut(s) 13
BbsI GAAGAC 4 cut(s) 84, 123, 209, 507
Bbv12I GWGCWC 1 cut(s) 597
BbvCI CCTCAGC 1 cut(s) 320
BbvI GCAGC 4 cut(s) 86, 92, 410, 915
BccI CCATC 5 cut(s) 149, 494, 503, 601, 885
BceAI ACGGC 2 cut(s) 39, 575
BclI TGATCA 2 cut(s) 130, 348
BcnI CCSGG 1 cut(s) 275
BcoDI GTCTC 3 cut(s) 14, 229, 878
BfaI CTAG 1 cut(s) 1002
BfoI RGCGCY 3 cut(s) 9, 29, 614
Bme1390I CCNGG 1 cut(s) 275
Bme18I GGWCC 1 cut(s) 445
BmgT120I GGNCC 3 cut(s) 228, 445, 691
BmiI GGNNCC 2 cut(s) 27, 966
BmrFI CCNGG 1 cut(s) 275
BmsI GCATC 3 cut(s) 571, 675, 996
BpiI GAAGAC 4 cut(s) 84, 123, 209, 507
BpmI CTGGAG 2 cut(s) 206, 824
Bpu10I CCTNAGC 1 cut(s) 320
BpuEI CTTGAG 1 cut(s) 253
BpuMI CCSGG 1 cut(s) 275
BsaHI GRCGYC 4 cut(s) 26, 89, 309, 381
BsaI GGTCTC 2 cut(s) 229, 878
BsaJI CCNNGG 1 cut(s) 162
BsaWI WCCGGW 3 cut(s) 37, 530, 825
Bsc4I CCNNNNNNNGG 6 cut(s) 15, 463, 627, 901, 940, 974
Bse118I RCCGGY 3 cut(s) 28, 311, 688
BseAI TCCGGA 1 cut(s) 530
BseDI CCNNGG 1 cut(s) 162
BseGI GGATG 2 cut(s) 300, 586
BseLI CCNNNNNNNGG 6 cut(s) 15, 463, 627, 901, 940, 974
BseMII CTCAG 5 cut(s) 334, 560, 594, 713, 807
BseRI GAGGAG 1 cut(s) 119
BseSI GKGCMC 1 cut(s) 597
BseXI GCAGC 4 cut(s) 86, 92, 410, 915
BsgI GTGCAG 1 cut(s) 914
Bsh1236I CGCG 4 cut(s) 146, 306, 331, 438
Bsh1285I CGRYCG 1 cut(s) 265
BshFI GGCC 3 cut(s) 230, 315, 692
BshNI GGYRCC 2 cut(s) 25, 964
BsiEI CGRYCG 1 cut(s) 265
BsiHKAI GWGCWC 1 cut(s) 597
BsiSI CCGG 8 cut(s) 29, 38, 275, 294, 312, 531, 689, 826
BslFI GGGAC 2 cut(s) 347, 587
BslI CCNNNNNNNGG 6 cut(s) 15, 463, 627, 901, 940, 974
BsmAI GTCTC 3 cut(s) 14, 229, 878
BsmBI CGTCTC 1 cut(s) 14
BsmFI GGGAC 2 cut(s) 347, 587
BsmI GAATGC 2 cut(s) 890, 904
BsnI GGCC 3 cut(s) 230, 315, 692
Bso31I GGTCTC 2 cut(s) 229, 878
Bsp1286I GDGCHC 1 cut(s) 597
Bsp13I TCCGGA 1 cut(s) 530
Bsp143I GATC 2 cut(s) 130, 348
BspANI GGCC 3 cut(s) 230, 315, 692
BspCNI CTCAG 5 cut(s) 333, 561, 595, 714, 808
BspEI TCCGGA 1 cut(s) 530
BspFNI CGCG 4 cut(s) 146, 306, 331, 438
BspLI GGNNCC 2 cut(s) 27, 966
BspT107I GGYRCC 2 cut(s) 25, 964
BspTNI GGTCTC 2 cut(s) 229, 878
BsrFI RCCGGY 3 cut(s) 28, 311, 688
BssAI RCCGGY 3 cut(s) 28, 311, 688
BssECI CCNNGG 1 cut(s) 162
BssMI GATC 2 cut(s) 130, 348
BssNI GRCGYC 4 cut(s) 26, 89, 309, 381
BssSI CACGAG 1 cut(s) 13
Bst2BI CACGAG 1 cut(s) 13
Bst4CI ACNGT 3 cut(s) 482, 665, 955
Bst6I CTCTTC 1 cut(s) 167
BstACI GRCGYC 4 cut(s) 26, 89, 309, 381
BstC8I GCNNGC 4 cut(s) 30, 313, 440, 690
BstDEI CTNAG 5 cut(s) 320, 569, 603, 722, 816
BstF5I GGATG 2 cut(s) 300, 586
BstFNI CGCG 4 cut(s) 146, 306, 331, 438
BstH2I RGCGCY 3 cut(s) 9, 29, 614
BstHHI GCGC 4 cut(s) 8, 28, 438, 613
BstKTI GATC 2 cut(s) 133, 351
BstMAI GTCTC 3 cut(s) 14, 229, 878
BstMBI GATC 2 cut(s) 130, 348
BstMCI CGRYCG 1 cut(s) 265
BstNSI RCATGY 1 cut(s) 286
BstSCI CCNGG 1 cut(s) 273
BstSLI GKGCMC 1 cut(s) 597
BstUI CGCG 4 cut(s) 146, 306, 331, 438
BstV1I GCAGC 4 cut(s) 86, 92, 410, 915
BstV2I GAAGAC 4 cut(s) 84, 123, 209, 507
BsuRI GGCC 3 cut(s) 230, 315, 692
BtgZI GCGATG 1 cut(s) 127
BtsCI GGATG 2 cut(s) 300, 586
BtsIMutI CAGTG 1 cut(s) 951
Cac8I GCNNGC 4 cut(s) 30, 313, 440, 690
CaiI CAGNNNCTG 1 cut(s) 128
CfoI GCGC 4 cut(s) 8, 28, 438, 613
Cfr10I RCCGGY 3 cut(s) 28, 311, 688
Cfr13I GGNCC 3 cut(s) 228, 445, 691
CseI GACGC 4 cut(s) 78, 135, 317, 389
Csp6I GTAC 3 cut(s) 271, 483, 965
CviAII CATG 4 cut(s) 52, 283, 746, 991
CviQI GTAC 3 cut(s) 271, 483, 965
DdeI CTNAG 5 cut(s) 320, 569, 603, 722, 816
DinI GGCGCC 1 cut(s) 27
DpnI GATC 2 cut(s) 132, 350
DpnII GATC 2 cut(s) 130, 348
EaeI YGGCCR 1 cut(s) 313
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
EciI GGCGGA 3 cut(s) 182, 403, 446
Eco31I GGTCTC 2 cut(s) 229, 878
Eco47I GGWCC 1 cut(s) 445
EcoO109I RGGNCCY 1 cut(s) 228
EcoRI GAATTC 1 cut(s) 866
EgeI GGCGCC 1 cut(s) 27
EheI GGCGCC 1 cut(s) 27
Esp3I CGTCTC 1 cut(s) 14
FaeI CATG 4 cut(s) 55, 286, 749, 994
FalI AAGNNNNNCTT 2 cut(s) 201, 233
FaqI GGGAC 2 cut(s) 347, 587
FatI CATG 4 cut(s) 51, 282, 745, 990
FauI CCCGC 2 cut(s) 324, 375
FbaI TGATCA 2 cut(s) 130, 348
FokI GGATG 2 cut(s) 287, 593
FspBI CTAG 1 cut(s) 1002
GlaI GCGC 4 cut(s) 7, 27, 437, 612
GsuI CTGGAG 2 cut(s) 206, 824
HaeII RGCGCY 3 cut(s) 9, 29, 614
HaeIII GGCC 3 cut(s) 230, 315, 692
HapII CCGG 8 cut(s) 29, 38, 275, 294, 312, 531, 689, 826
HgaI GACGC 4 cut(s) 78, 135, 317, 389
HhaI GCGC 4 cut(s) 8, 28, 438, 613
Hin1I GRCGYC 4 cut(s) 26, 89, 309, 381
Hin1II CATG 4 cut(s) 55, 286, 749, 994
Hin6I GCGC 4 cut(s) 6, 26, 436, 611
HinP1I GCGC 4 cut(s) 6, 26, 436, 611
HinfI GANTC 7 cut(s) 11, 125, 340, 474, 763, 829, 978
HpaII CCGG 8 cut(s) 29, 38, 275, 294, 312, 531, 689, 826
HphI GGTGA 1 cut(s) 27
Hpy166II GTNNAC 1 cut(s) 595
Hpy188III TCNNGA 5 cut(s) 223, 377, 531, 803, 895
Hpy8I GTNNAC 1 cut(s) 595
Hpy99I CGWCG 6 cut(s) 151, 154, 157, 160, 311, 494
HpyAV CCTTC 1 cut(s) 803
HpyCH4III ACNGT 3 cut(s) 482, 665, 955
HpyCH4V TGCA 3 cut(s) 595, 890, 931
HpyF3I CTNAG 5 cut(s) 320, 569, 603, 722, 816
Hsp92I GRCGYC 4 cut(s) 26, 89, 309, 381
Hsp92II CATG 4 cut(s) 55, 286, 749, 994
HspAI GCGC 4 cut(s) 6, 26, 436, 611
KasI GGCGCC 1 cut(s) 25
Kpn2I TCCGGA 1 cut(s) 530
KpnI GGTACC 1 cut(s) 968
KroI GCCGGC 3 cut(s) 28, 311, 688
KroNI GCCGGC 3 cut(s) 30, 313, 690
Ksp22I TGATCA 2 cut(s) 130, 348
Kzo9I GATC 2 cut(s) 130, 348
LmnI GCTCC 3 cut(s) 199, 433, 533
Lsp1109I GCAGC 4 cut(s) 86, 92, 410, 915
LweI GCATC 3 cut(s) 571, 675, 996
MaeI CTAG 1 cut(s) 1002
MaeIII GTNAC 1 cut(s) 754
MalI GATC 2 cut(s) 132, 350
MboI GATC 2 cut(s) 130, 348
MboII GAAGA 6 cut(s) 84, 128, 184, 209, 335, 512
MhlI GDGCHC 1 cut(s) 597
MluCI AATT 3 cut(s) 715, 768, 866
Mly113I GGCGCC 1 cut(s) 26
MlyI GAGTC 4 cut(s) 5, 119, 757, 972
MmeI TCCRAC 4 cut(s) 36, 415, 843, 939
MroI TCCGGA 1 cut(s) 530
MroNI GCCGGC 3 cut(s) 28, 311, 688
MseI TTAA 1 cut(s) 972
MslI CAYNNNNRTG 3 cut(s) 683, 750, 885
MspA1I CMGCKG 2 cut(s) 77, 83
MspI CCGG 8 cut(s) 29, 38, 275, 294, 312, 531, 689, 826
MspR9I CCNGG 1 cut(s) 275
Mva1269I GAATGC 2 cut(s) 890, 904
MvnI CGCG 4 cut(s) 146, 306, 331, 438
NaeI GCCGGC 3 cut(s) 30, 313, 690
NarI GGCGCC 1 cut(s) 26
NciI CCSGG 1 cut(s) 275
NdeII GATC 2 cut(s) 130, 348
NgoMIV GCCGGC 3 cut(s) 28, 311, 688
NlaIII CATG 4 cut(s) 55, 286, 749, 994
NlaIV GGNNCC 2 cut(s) 27, 966
NmeAIII GCCGAG 1 cut(s) 143
NmuCI GTSAC 1 cut(s) 754
NspI RCATGY 1 cut(s) 286
PciI ACATGT 1 cut(s) 282
PcsI WCGNNNNNNNCGW 1 cut(s) 155
PctI GAATGC 2 cut(s) 890, 904
PdiI GCCGGC 3 cut(s) 30, 313, 690
PfeI GAWTC 3 cut(s) 340, 474, 829
PflFI GACNNNGTC 1 cut(s) 47
PflMI CCANNNNNTGG 1 cut(s) 940
PleI GAGTC 4 cut(s) 5, 119, 757, 972
PluTI GGCGCC 1 cut(s) 29
PpsI GAGTC 4 cut(s) 5, 119, 757, 972
PscI ACATGT 1 cut(s) 282
PspN4I GGNNCC 2 cut(s) 27, 966
PspPI GGNCC 3 cut(s) 228, 445, 691
PstNI CAGNNNCTG 1 cut(s) 128
PsyI GACNNNGTC 1 cut(s) 47
RsaI GTAC 3 cut(s) 272, 484, 966
RsaNI GTAC 3 cut(s) 271, 483, 965
RseI CAYNNNNRTG 3 cut(s) 683, 750, 885
SaqAI TTAA 1 cut(s) 972
Sau3AI GATC 2 cut(s) 130, 348
Sau96I GGNCC 3 cut(s) 228, 445, 691
SchI GAGTC 4 cut(s) 5, 119, 757, 972
ScrFI CCNGG 1 cut(s) 275
SduI GDGCHC 1 cut(s) 597
SfaNI GCATC 3 cut(s) 571, 675, 996
SfoI GGCGCC 1 cut(s) 27
SinI GGWCC 1 cut(s) 445
SmiMI CAYNNNNRTG 3 cut(s) 683, 750, 885
SmlI CTYRAG 1 cut(s) 232
SmoI CTYRAG 1 cut(s) 232
Sse9I AATT 3 cut(s) 715, 768, 866
SspDI GGCGCC 1 cut(s) 25
SspMI CTAG 1 cut(s) 1002
StyD4I CCNGG 1 cut(s) 273
TaaI ACNGT 3 cut(s) 482, 665, 955
TaqI TCGA 2 cut(s) 489, 766
TaqII GACCGA 2 cut(s) 279, 860
TasI AATT 3 cut(s) 715, 768, 866
TauI GCSGC 9 cut(s) 65, 68, 71, 74, 80, 86, 89, 429, 905
TfiI GAWTC 3 cut(s) 340, 474, 829
Tru1I TTAA 1 cut(s) 972
Tru9I TTAA 1 cut(s) 972
TscAI CASTG 1 cut(s) 958
TseFI GTSAC 1 cut(s) 754
TseI GCWGC 4 cut(s) 74, 80, 423, 928
Tsp45I GTSAC 1 cut(s) 754
TspDTI ATGAA 3 cut(s) 84, 513, 734
TspGWI ACGGA 2 cut(s) 203, 767
TspRI CASTG 1 cut(s) 958
Tth111I GACNNNGTC 1 cut(s) 47
Van91I CCANNNNNTGG 1 cut(s) 940
VneI GTGCAC 1 cut(s) 593
VpaK11BI GGWCC 1 cut(s) 445
XapI RAATTY 1 cut(s) 866
XceI RCATGY 1 cut(s) 286
XspI CTAG 1 cut(s) 1002
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.